source: sasview/sansmodels/src/sans/models/c_extensions/refl_adv.c @ d760c0a

// The original code, of which work was not DANSE funded,
// was provided by J. Cho.
/**
 * NR model Parratt method
 */
#include <math.h>
#include "refl_adv.h"
#include "libmultifunc/librefl.h"
#include <stdio.h>
#include <stdlib.h>

#define lamda 4.62


double re_adv_kernel(double dp[], double q) {
        int n = dp[0];
        int i,j;
        double nsl;

        double scale = dp[1];
        double thick_inter_sub = dp[2];
        double sld_sub = dp[4];
        double sld_super = dp[5];
        double background = dp[6];
        double npts = dp[69]; //number of sub_layers in each interface

        double total_thick=0.0;

  int n_s;
  double sld_i,sldim_i,dz,phi,R,ko2;
  double pi;

  int* fun_type;
  double* sld;
  double* sld_im;
  double* thick_inter;
  double* thick;
  double* fun_coef;
  complex  phi1,alpha,alpha2,kn,fnm,fnp,rn,Xn,nn,nn2,an,nnp1,one,two,n_sub,n_sup,knp1,Xnp1;

  fun_type = (int*)malloc((n+2)*sizeof(int));
  sld = (double*)malloc((n+2)*sizeof(double));
  sld_im = (double*)malloc((n+2)*sizeof(double));
  thick_inter = (double*)malloc((n+2)*sizeof(double));
  thick = (double*)malloc((n+2)*sizeof(double));
  fun_coef = (double*)malloc((n+2)*sizeof(double));

  fun_type[0] = dp[3];
        fun_coef[0] = fabs(dp[70]);
        for (i =1; i<=n; i++){
                sld[i] = dp[i+6];
                thick_inter[i]= dp[i+16];
                thick[i] = dp[i+26];
                fun_type[i] = dp[i+36];
                sld_im[i] = dp[i+46];
                fun_coef[i] = fabs(dp[i+56]);
                //printf("type_func2 =%g\n",fun_coef[i]);

                total_thick += thick[i] + thick_inter[i];
        }
        sld[0] = sld_sub;
        sld[n+1] = sld_super;
        sld_im[0] = fabs(dp[1+66]);
        sld_im[n+1] = fabs(dp[2+66]);
        thick[0] = total_thick/5.0;
        thick[n+1] = total_thick/5.0;
        thick_inter[0] = thick_inter_sub;
        thick_inter[n+1] = 0.0;
        fun_coef[n+1] = 0.0;

        nsl=npts;//21.0; //nsl = Num_sub_layer:  MUST ODD number in double //no other number works now

        pi = 4.0*atan(1.0);
    one = cassign(1.0,0.0);
        Xn = cassign(0.0,0.0);
        two = cassign(0.0,-2.0);

        //Checking if floor is available.
        //no imaginary sld inputs in this function yet
    n_sub=cassign(1.0-sld_sub*pow(lamda,2.0)/(2.0*pi),pow(lamda,2.0)/(2.0*pi)*sld_im[0]);
    n_sup=cassign(1.0-sld_super*pow(lamda,2.0)/(2.0*pi),pow(lamda,2.0)/(2.0*pi)*sld_im[n+1]);
    ko2 = pow(2.0*pi/lamda,2.0);

    phi = asin(lamda*q/(4.0*pi));
    phi1 = cdiv(rcmult(phi,one),n_sup);
    alpha = cmult(n_sup,ccos(phi1));
        alpha2 = cmult(alpha,alpha);

    nnp1=n_sub;
    knp1=csqrt(rcmult(ko2,csub(cmult(nnp1,nnp1),alpha2)));  //nnp1*ko*sin(phinp1)
    Xnp1=cassign(0.0,0.0);
    dz = 0.0;
    // iteration for # of layers +sub from the top
    for (i=1;i<=n+1; i++){
        //if (fun_coef[i]==0.0)
        //      // this condition protects an error in numerical multiplication
        //      fun_coef[i] = 1e-14;
                //iteration for 9 sub-layers
                for (j=0;j<2;j++){
                        for (n_s=0;n_s<nsl; n_s++){
                                // for flat layer
                                if (j==1){
                                        if (i==n+1)
                                                break;
                                        dz = thick[i];
                                        sld_i = sld[i];
                                        sldim_i = sld_im[i];
                                }
                                // for interface
                                else{
                                        dz = thick_inter[i-1]/nsl;
                                        if (sld[i-1] == sld[i]){
                                                sld_i = sld[i];
                                        }
                                        else{
                                                sld_i = intersldfunc(fun_type[i-1],nsl, n_s+0.5, fun_coef[i-1], sld[i-1], sld[i]);
                                        }
                                        if (sld_im[i-1] == sld_im[i]){
                                                sldim_i = sld_im[i];
                                        }
                                        else{
                                                sldim_i = intersldfunc(fun_type[i-1],nsl, n_s+0.5, fun_coef[i-1], sld_im[i-1], sld_im[i]);
                                        }
                                }
                                nn = cassign(1.0-sld_i*pow(lamda,2.0)/(2.0*pi),pow(lamda,2.0)/(2.0*pi)*sldim_i);
                                nn2=cmult(nn,nn);

                                kn=csqrt(rcmult(ko2,csub(nn2,alpha2)));        //nn*ko*sin(phin)
                                an=cexp(rcmult(dz,cmult(two,kn)));

                                fnm=csub(kn,knp1);
                                fnp=cadd(kn,knp1);
                                rn=cdiv(fnm,fnp);
                                Xn=cmult(an,cdiv(cadd(rn,Xnp1),cadd(one,cmult(rn,Xnp1))));    //Xn=an*((rn+Xnp1*anp1)/(1+rn*Xnp1*anp1))

                                Xnp1=Xn;
                                knp1=kn;
                                // no for-loop for flat layer
                                if (j==1)
                                        break;
                        }
                }
    }
    R=pow(Xn.re,2.0)+pow(Xn.im,2.0);
    // This temperarily fixes the total reflection for Rfunction and linear.
    // ToDo: Show why it happens that Xn.re=0 and Xn.im >1!
    if (Xn.im == 0.0 || R > 1){
        R=1.0;
    }
    R *= scale;
    R += background;

    free(fun_type);
    free(sld);
    free(sld_im);
    free(thick_inter);
    free(thick);
    free(fun_coef);

    return R;

}

/**
 * Function to evaluate NR function
 * @param pars: parameters of refl
 * @param q: q-value
 * @return: function value
 */

double refl_adv_analytical_1D(ReflAdvParameters *pars, double q) {
        double dp[71];

        dp[0] = pars->n_layers;
        dp[1] = pars->scale;
        dp[2] = pars->thick_inter0;
        dp[3] = pars->func_inter0;
        dp[4] = pars->sld_bottom0;
        dp[5] = pars->sld_medium;
        dp[6] = pars->background;

        dp[7] = pars->sld_flat1;
        dp[8] = pars->sld_flat2;
        dp[9] = pars->sld_flat3;
        dp[10] = pars->sld_flat4;
        dp[11] = pars->sld_flat5;
        dp[12] = pars->sld_flat6;
        dp[13] = pars->sld_flat7;
        dp[14] = pars->sld_flat8;
        dp[15] = pars->sld_flat9;
        dp[16] = pars->sld_flat10;

        dp[17] = pars->thick_inter1;
        dp[18] = pars->thick_inter2;
        dp[19] = pars->thick_inter3;
        dp[20] = pars->thick_inter4;
        dp[21] = pars->thick_inter5;
        dp[22] = pars->thick_inter6;
        dp[23] = pars->thick_inter7;
        dp[24] = pars->thick_inter8;
        dp[25] = pars->thick_inter9;
        dp[26] = pars->thick_inter10;

        dp[27] = pars->thick_flat1;
        dp[28] = pars->thick_flat2;
        dp[29] = pars->thick_flat3;
        dp[30] = pars->thick_flat4;
        dp[31] = pars->thick_flat5;
        dp[32] = pars->thick_flat6;
        dp[33] = pars->thick_flat7;
        dp[34] = pars->thick_flat8;
        dp[35] = pars->thick_flat9;
        dp[36] = pars->thick_flat10;

        dp[37] = pars->func_inter1;
        dp[38] = pars->func_inter2;
        dp[39] = pars->func_inter3;
        dp[40] = pars->func_inter4;
        dp[41] = pars->func_inter5;
        dp[42] = pars->func_inter6;
        dp[43] = pars->func_inter7;
        dp[44] = pars->func_inter8;
        dp[45] = pars->func_inter9;
        dp[46] = pars->func_inter10;

        dp[47] = pars->sldIM_flat1;
        dp[48] = pars->sldIM_flat2;
        dp[49] = pars->sldIM_flat3;
        dp[50] = pars->sldIM_flat4;
        dp[51] = pars->sldIM_flat5;
        dp[52] = pars->sldIM_flat6;
        dp[53] = pars->sldIM_flat7;
        dp[54] = pars->sldIM_flat8;
        dp[55] = pars->sldIM_flat9;
        dp[56] = pars->sldIM_flat10;

        dp[57] = pars->nu_inter1;
        dp[58] = pars->nu_inter2;
        dp[59] = pars->nu_inter3;
        dp[60] = pars->nu_inter4;
        dp[61] = pars->nu_inter5;
        dp[62] = pars->nu_inter6;
        dp[63] = pars->nu_inter7;
        dp[64] = pars->nu_inter8;
        dp[65] = pars->nu_inter9;
        dp[66] = pars->nu_inter10;

        dp[67] = pars->sldIM_sub0;
        dp[68] = pars->sldIM_medium;
        dp[69] = pars->npts_inter;
        dp[70] = pars->nu_inter0;

        return re_adv_kernel(dp, q);
}

/**
 * Function to evaluate NR function
 * @param pars: parameters of NR
 * @param q: q-value
 * @return: function value
 */
double refl_adv_analytical_2D(ReflAdvParameters *pars, double q, double phi) {
        return refl_adv_analytical_1D(pars,q);
}

double refl_adv_analytical_2DXY(ReflAdvParameters *pars, double qx, double qy){
        return refl_adv_analytical_1D(pars,sqrt(qx*qx+qy*qy));
}