1 | /** |
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2 | * Scattering model for a parallelepiped |
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3 | * TODO: Add 2D analysis |
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4 | */ |
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5 | |
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6 | #include "parallelepiped.h" |
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7 | #include <math.h> |
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8 | #include "libCylinder.h" |
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9 | #include <stdio.h> |
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10 | #include <stdlib.h> |
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11 | |
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12 | |
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13 | /** |
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14 | * Function to evaluate 1D scattering function |
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15 | * @param pars: parameters of the parallelepiped |
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16 | * @param q: q-value |
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17 | * @return: function value |
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18 | */ |
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19 | double parallelepiped_analytical_1D(ParallelepipedParameters *pars, double q) { |
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20 | double dp[7]; |
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21 | |
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22 | // Fill paramater array |
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23 | dp[0] = pars->scale; |
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24 | dp[1] = pars->short_a; |
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25 | dp[2] = pars->short_b; |
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26 | dp[3] = pars->long_c; |
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27 | dp[4] = pars->sldPipe; |
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28 | dp[5] = pars->sldSolv; |
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29 | dp[6] = pars->background; |
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30 | |
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31 | // Call library function to evaluate model |
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32 | return Parallelepiped(dp, q); |
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33 | } |
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34 | |
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35 | |
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36 | double pkernel(double a, double b,double c, double ala, double alb, double alc){ |
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37 | // mu passed in is really mu*sqrt(1-sig^2) |
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38 | double argA,argB,argC,tmp1,tmp2,tmp3; //local variables |
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39 | |
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40 | //handle arg=0 separately, as sin(t)/t -> 1 as t->0 |
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41 | argA = a*ala/2.0; |
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42 | argB = b*alb/2.0; |
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43 | argC = c*alc/2.0; |
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44 | if(argA==0.0) { |
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45 | tmp1 = 1.0; |
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46 | } else { |
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47 | tmp1 = sin(argA)*sin(argA)/argA/argA; |
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48 | } |
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49 | if (argB==0.0) { |
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50 | tmp2 = 1.0; |
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51 | } else { |
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52 | tmp2 = sin(argB)*sin(argB)/argB/argB; |
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53 | } |
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54 | |
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55 | if (argC==0.0) { |
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56 | tmp3 = 1.0; |
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57 | } else { |
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58 | tmp3 = sin(argC)*sin(argC)/argC/argC; |
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59 | } |
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60 | |
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61 | return (tmp1*tmp2*tmp3); |
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62 | |
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63 | }//Function pkernel() |
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64 | |
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65 | |
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66 | |
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67 | |
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68 | /** |
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69 | * Function to evaluate 2D scattering function |
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70 | * @param pars: parameters of the parallelepiped |
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71 | * @param q: q-value |
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72 | * @return: function value |
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73 | */ |
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74 | double parallelepiped_analytical_2DXY(ParallelepipedParameters *pars, double qx, double qy) { |
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75 | double q; |
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76 | q = sqrt(qx*qx+qy*qy); |
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77 | return parallelepiped_analytical_2D_scaled(pars, q, qx/q, qy/q); |
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78 | } |
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79 | |
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80 | |
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81 | /** |
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82 | * Function to evaluate 2D scattering function |
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83 | * @param pars: parameters of the Parallelepiped |
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84 | * @param q: q-value |
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85 | * @param phi: angle phi |
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86 | * @return: function value |
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87 | */ |
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88 | double parallelepiped_analytical_2D(ParallelepipedParameters *pars, double q, double phi) { |
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89 | return parallelepiped_analytical_2D_scaled(pars, q, cos(phi), sin(phi)); |
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90 | } |
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91 | |
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92 | /** |
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93 | * Function to evaluate 2D scattering function |
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94 | * @param pars: parameters of the parallelepiped |
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95 | * @param q: q-value |
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96 | * @param q_x: q_x / q |
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97 | * @param q_y: q_y / q |
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98 | * @return: function value |
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99 | */ |
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100 | double parallelepiped_analytical_2D_scaled(ParallelepipedParameters *pars, double q, double q_x, double q_y) { |
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101 | double cparallel_x, cparallel_y, cparallel_z, bparallel_x, bparallel_y, parallel_x, parallel_y, parallel_z; |
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102 | double q_z; |
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103 | double alpha, vol, cos_val_c, cos_val_b, cos_val_a, edgeA, edgeB, edgeC; |
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104 | |
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105 | double answer; |
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106 | double pi = 4.0*atan(1.0); |
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107 | |
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108 | edgeA = pars->short_a; |
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109 | edgeB = pars->short_b; |
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110 | edgeC = pars->long_c; |
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111 | |
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112 | |
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113 | // parallelepiped c axis orientation |
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114 | cparallel_x = sin(pars->parallel_theta) * cos(pars->parallel_phi); |
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115 | cparallel_y = sin(pars->parallel_theta) * sin(pars->parallel_phi); |
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116 | cparallel_z = cos(pars->parallel_theta); |
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117 | |
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118 | // q vector |
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119 | q_z = 0.0; |
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120 | |
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121 | // Compute the angle btw vector q and the |
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122 | // axis of the parallelepiped |
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123 | cos_val_c = cparallel_x*q_x + cparallel_y*q_y + cparallel_z*q_z; |
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124 | alpha = acos(cos_val_c); |
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125 | |
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126 | // parallelepiped a axis orientation |
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127 | parallel_x = sin(pars->parallel_psi);//cos(pars->parallel_theta) * sin(pars->parallel_phi)*sin(pars->parallel_psi); |
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128 | parallel_y = cos(pars->parallel_psi);//cos(pars->parallel_theta) * cos(pars->parallel_phi)*cos(pars->parallel_psi); |
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129 | |
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130 | cos_val_a = parallel_x*q_x + parallel_y*q_y; |
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131 | |
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132 | |
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133 | |
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134 | // parallelepiped b axis orientation |
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135 | bparallel_x = sqrt(1.0-sin(pars->parallel_theta)*cos(pars->parallel_phi))*cos(pars->parallel_psi);//cos(pars->parallel_theta) * cos(pars->parallel_phi)* cos(pars->parallel_psi); |
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136 | bparallel_y = sqrt(1.0-sin(pars->parallel_theta)*cos(pars->parallel_phi))*sin(pars->parallel_psi);//cos(pars->parallel_theta) * sin(pars->parallel_phi)* sin(pars->parallel_psi); |
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137 | // axis of the parallelepiped |
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138 | cos_val_b = sin(acos(cos_val_a)) ; |
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139 | |
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140 | |
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141 | |
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142 | // The following test should always pass |
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143 | if (fabs(cos_val_c)>1.0) { |
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144 | printf("parallel_ana_2D: Unexpected error: cos(alpha)>1\n"); |
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145 | return 0; |
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146 | } |
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147 | |
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148 | // Call the IGOR library function to get the kernel |
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149 | answer = pkernel( q*edgeA, q*edgeB, q*edgeC, sin(alpha)*cos_val_a,sin(alpha)*cos_val_b,cos_val_c); |
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150 | |
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151 | // Multiply by contrast^2 |
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152 | answer *= (pars->sldPipe - pars->sldSolv) * (pars->sldPipe - pars->sldSolv); |
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153 | |
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154 | //normalize by cylinder volume |
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155 | //NOTE that for this (Fournet) definition of the integral, one must MULTIPLY by Vparallel |
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156 | vol = edgeA* edgeB * edgeC; |
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157 | answer *= vol; |
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158 | |
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159 | //convert to [cm-1] |
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160 | answer *= 1.0e8; |
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161 | |
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162 | //Scale |
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163 | answer *= pars->scale; |
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164 | |
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165 | // add in the background |
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166 | answer += pars->background; |
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167 | |
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168 | return answer; |
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169 | } |
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170 | |
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