1 | /** |
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2 | * Scattering model for a cylinder |
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3 | * @author: Mathieu Doucet / UTK |
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4 | */ |
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5 | |
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6 | #include "cylinder.h" |
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7 | #include <math.h> |
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8 | #include "libCylinder.h" |
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9 | #include <stdio.h> |
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10 | #include <stdlib.h> |
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11 | |
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12 | |
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13 | /** |
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14 | * Function to evaluate 1D scattering function |
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15 | * @param pars: parameters of the cylinder |
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16 | * @param q: q-value |
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17 | * @return: function value |
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18 | */ |
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19 | double cylinder_analytical_1D(CylinderParameters *pars, double q) { |
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20 | double dp[6]; |
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21 | |
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22 | // Fill paramater array |
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23 | dp[0] = pars->scale; |
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24 | dp[1] = pars->radius; |
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25 | dp[2] = pars->length; |
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26 | dp[3] = pars->sldCyl; |
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27 | dp[4] = pars->sldSolv; |
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28 | dp[5] = pars->background; |
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29 | |
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30 | // Call library function to evaluate model |
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31 | return CylinderForm(dp, q); |
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32 | } |
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33 | |
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34 | /** |
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35 | * Function to evaluate 2D scattering function |
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36 | * @param pars: parameters of the cylinder |
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37 | * @param q: q-value |
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38 | * @return: function value |
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39 | */ |
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40 | double cylinder_analytical_2DXY(CylinderParameters *pars, double qx, double qy) { |
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41 | double q; |
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42 | q = sqrt(qx*qx+qy*qy); |
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43 | return cylinder_analytical_2D_scaled(pars, q, qx/q, qy/q); |
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44 | } |
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45 | |
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46 | |
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47 | /** |
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48 | * Function to evaluate 2D scattering function |
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49 | * @param pars: parameters of the cylinder |
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50 | * @param q: q-value |
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51 | * @param phi: angle phi |
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52 | * @return: function value |
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53 | */ |
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54 | double cylinder_analytical_2D(CylinderParameters *pars, double q, double phi) { |
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55 | return cylinder_analytical_2D_scaled(pars, q, cos(phi), sin(phi)); |
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56 | } |
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57 | |
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58 | /** |
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59 | * Function to evaluate 2D scattering function |
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60 | * @param pars: parameters of the cylinder |
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61 | * @param q: q-value |
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62 | * @param q_x: q_x / q |
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63 | * @param q_y: q_y / q |
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64 | * @return: function value |
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65 | */ |
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66 | double cylinder_analytical_2D_scaled(CylinderParameters *pars, double q, double q_x, double q_y) { |
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67 | double cyl_x, cyl_y, cyl_z; |
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68 | double q_z; |
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69 | double alpha, vol, cos_val; |
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70 | double answer; |
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71 | |
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72 | // Cylinder orientation |
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73 | cyl_x = sin(pars->cyl_theta) * cos(pars->cyl_phi); |
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74 | cyl_y = sin(pars->cyl_theta) * sin(pars->cyl_phi); |
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75 | cyl_z = cos(pars->cyl_theta); |
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76 | |
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77 | // q vector |
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78 | q_z = 0; |
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79 | |
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80 | // Compute the angle btw vector q and the |
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81 | // axis of the cylinder |
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82 | cos_val = cyl_x*q_x + cyl_y*q_y + cyl_z*q_z; |
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83 | |
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84 | // The following test should always pass |
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85 | if (fabs(cos_val)>1.0) { |
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86 | printf("cyl_ana_2D: Unexpected error: cos(alpha)>1\n"); |
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87 | return 0; |
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88 | } |
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89 | |
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90 | // Note: cos(alpha) = 0 and 1 will get an |
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91 | // undefined value from CylKernel |
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92 | alpha = acos( cos_val ); |
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93 | |
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94 | // Call the IGOR library function to get the kernel |
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95 | answer = CylKernel(q, pars->radius, pars->length/2.0, alpha) / sin(alpha); |
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96 | |
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97 | // Multiply by contrast^2 |
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98 | answer *= (pars->sldCyl - pars->sldSolv)*(pars->sldCyl - pars->sldSolv); |
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99 | |
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100 | //normalize by cylinder volume |
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101 | //NOTE that for this (Fournet) definition of the integral, one must MULTIPLY by Vcyl |
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102 | vol = acos(-1.0) * pars->radius * pars->radius * pars->length; |
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103 | answer *= vol; |
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104 | |
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105 | //convert to [cm-1] |
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106 | answer *= 1.0e8; |
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107 | |
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108 | //Scale |
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109 | answer *= pars->scale; |
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110 | |
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111 | // add in the background |
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112 | answer += pars->background; |
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113 | |
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114 | return answer; |
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115 | } |
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116 | |
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