[2c4b289] | 1 | #!/usr/bin/env python |
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| 2 | |
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[79ac6f8] | 3 | ############################################################################## |
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| 4 | # This software was developed by the University of Tennessee as part of the |
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| 5 | # Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
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| 6 | # project funded by the US National Science Foundation. |
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| 7 | # |
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| 8 | # If you use DANSE applications to do scientific research that leads to |
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| 9 | # publication, we ask that you acknowledge the use of the software with the |
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| 10 | # following sentence: |
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| 11 | # |
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| 12 | # "This work benefited from DANSE software developed under NSF award DMR-0520547." |
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| 13 | # |
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| 14 | # copyright 2008, University of Tennessee |
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| 15 | ############################################################################## |
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[2c4b289] | 16 | |
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| 17 | |
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[79ac6f8] | 18 | """ |
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| 19 | Provide functionality for a C extension model |
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[2c4b289] | 20 | |
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[79ac6f8] | 21 | :WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
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| 22 | DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\vesicle.h |
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| 23 | AND RE-RUN THE GENERATOR SCRIPT |
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[2c4b289] | 24 | |
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| 25 | """ |
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| 26 | |
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| 27 | from sans.models.BaseComponent import BaseComponent |
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| 28 | from sans_extension.c_models import CVesicleModel |
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| 29 | import copy |
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[96656e3] | 30 | |
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| 31 | def create_VesicleModel(): |
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| 32 | obj = VesicleModel() |
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| 33 | #CVesicleModel.__init__(obj) is called by VesicleModel constructor |
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| 34 | return obj |
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| 35 | |
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[2c4b289] | 36 | class VesicleModel(CVesicleModel, BaseComponent): |
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[79ac6f8] | 37 | """ |
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| 38 | Class that evaluates a VesicleModel model. |
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| 39 | This file was auto-generated from ..\c_extensions\vesicle.h. |
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| 40 | Refer to that file and the structure it contains |
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| 41 | for details of the model. |
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| 42 | List of default parameters: |
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[2c4b289] | 43 | scale = 1.0 |
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[e2afadf] | 44 | radius = 100.0 [A] |
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[2c4b289] | 45 | thickness = 30.0 [A] |
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[27972c1d] | 46 | core_sld = 6.36e-006 [1/A^(2)] |
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| 47 | shell_sld = 5e-007 [1/A^(2)] |
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[2c4b289] | 48 | background = 0.0 [1/cm] |
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| 49 | |
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| 50 | """ |
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| 51 | |
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| 52 | def __init__(self): |
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| 53 | """ Initialization """ |
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| 54 | |
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| 55 | # Initialize BaseComponent first, then sphere |
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| 56 | BaseComponent.__init__(self) |
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[96656e3] | 57 | #apply(CVesicleModel.__init__, (self,)) |
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[2c4b289] | 58 | CVesicleModel.__init__(self) |
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| 59 | |
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| 60 | ## Name of the model |
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| 61 | self.name = "VesicleModel" |
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| 62 | ## Model description |
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[7ad9887] | 63 | self.description ="""Model parameters: radius : the core radius of the vesicle |
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| 64 | thickness: the shell thickness |
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| 65 | core_sld: the core SLD |
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| 66 | shell_sld: the shell SLD |
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[b4679de] | 67 | background: incoherent background |
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| 68 | scale : scale factor""" |
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[2c4b289] | 69 | |
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[fe9c19b4] | 70 | ## Parameter details [units, min, max] |
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[2c4b289] | 71 | self.details = {} |
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| 72 | self.details['scale'] = ['', None, None] |
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[e2afadf] | 73 | self.details['radius'] = ['[A]', None, None] |
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[2c4b289] | 74 | self.details['thickness'] = ['[A]', None, None] |
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[27972c1d] | 75 | self.details['core_sld'] = ['[1/A^(2)]', None, None] |
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| 76 | self.details['shell_sld'] = ['[1/A^(2)]', None, None] |
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[2c4b289] | 77 | self.details['background'] = ['[1/cm]', None, None] |
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| 78 | |
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[fe9c19b4] | 79 | ## fittable parameters |
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[e2afadf] | 80 | self.fixed=['radius.width', 'thickness.width'] |
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[2c4b289] | 81 | |
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[35aface] | 82 | ## non-fittable parameters |
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[96656e3] | 83 | self.non_fittable = [] |
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[35aface] | 84 | |
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[2c4b289] | 85 | ## parameters with orientation |
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[96656e3] | 86 | self.orientation_params = [] |
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[2c4b289] | 87 | |
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[96656e3] | 88 | def __reduce_ex__(self, proto): |
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[79ac6f8] | 89 | """ |
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[96656e3] | 90 | Overwrite the __reduce_ex__ of PyTypeObject *type call in the init of |
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| 91 | c model. |
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[79ac6f8] | 92 | """ |
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[96656e3] | 93 | return (create_VesicleModel,tuple()) |
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[fe9c19b4] | 94 | |
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[96656e3] | 95 | def clone(self): |
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| 96 | """ Return a identical copy of self """ |
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| 97 | return self._clone(VesicleModel()) |
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[fe9c19b4] | 98 | |
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[2c4b289] | 99 | |
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[79ac6f8] | 100 | def run(self, x=0.0): |
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| 101 | """ |
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| 102 | Evaluate the model |
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| 103 | |
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| 104 | :param x: input q, or [q,phi] |
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| 105 | |
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| 106 | :return: scattering function P(q) |
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| 107 | |
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[2c4b289] | 108 | """ |
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| 109 | |
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| 110 | return CVesicleModel.run(self, x) |
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| 111 | |
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[79ac6f8] | 112 | def runXY(self, x=0.0): |
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| 113 | """ |
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| 114 | Evaluate the model in cartesian coordinates |
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| 115 | |
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| 116 | :param x: input q, or [qx, qy] |
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| 117 | |
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| 118 | :return: scattering function P(q) |
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| 119 | |
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[2c4b289] | 120 | """ |
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| 121 | |
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| 122 | return CVesicleModel.runXY(self, x) |
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| 123 | |
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[79ac6f8] | 124 | def evalDistribution(self, x=[]): |
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| 125 | """ |
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| 126 | Evaluate the model in cartesian coordinates |
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| 127 | |
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| 128 | :param x: input q[], or [qx[], qy[]] |
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| 129 | |
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| 130 | :return: scattering function P(q[]) |
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| 131 | |
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[870f131] | 132 | """ |
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[f9a1279] | 133 | return CVesicleModel.evalDistribution(self, x) |
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[870f131] | 134 | |
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[5eb9154] | 135 | def calculate_ER(self): |
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[79ac6f8] | 136 | """ |
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| 137 | Calculate the effective radius for P(q)*S(q) |
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| 138 | |
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| 139 | :return: the value of the effective radius |
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| 140 | |
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[5eb9154] | 141 | """ |
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| 142 | return CVesicleModel.calculate_ER(self) |
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| 143 | |
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[2c4b289] | 144 | def set_dispersion(self, parameter, dispersion): |
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| 145 | """ |
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[79ac6f8] | 146 | Set the dispersion object for a model parameter |
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| 147 | |
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| 148 | :param parameter: name of the parameter [string] |
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| 149 | :param dispersion: dispersion object of type DispersionModel |
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| 150 | |
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[2c4b289] | 151 | """ |
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| 152 | return CVesicleModel.set_dispersion(self, parameter, dispersion.cdisp) |
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| 153 | |
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| 154 | |
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| 155 | # End of file |
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