source: sasview/sansmodels/src/sans/models/StackedDisksModel.py @ c451be9

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Last change on this file since c451be9 was c451be9, checked in by Jae Cho <jhjcho@…>, 15 years ago

corrections on the definition of polydispersity as suggested by steve K: should be normalized by average volume

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File size: 5.5 KB
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1#!/usr/bin/env python
2"""
3        This software was developed by the University of Tennessee as part of the
4        Distributed Data Analysis of Neutron Scattering Experiments (DANSE)
5        project funded by the US National Science Foundation.
6
7        If you use DANSE applications to do scientific research that leads to
8        publication, we ask that you acknowledge the use of the software with the
9        following sentence:
10
11        "This work benefited from DANSE software developed under NSF award DMR-0520547."
12
13        copyright 2008, University of Tennessee
14"""
15
16""" Provide functionality for a C extension model
17
18        WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY
19                 DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\stacked_disks.h
20                 AND RE-RUN THE GENERATOR SCRIPT
21
22"""
23
24from sans.models.BaseComponent import BaseComponent
25from sans_extension.c_models import CStackedDisksModel
26import copy   
27   
28class StackedDisksModel(CStackedDisksModel, BaseComponent):
29    """ Class that evaluates a StackedDisksModel model.
30        This file was auto-generated from ..\c_extensions\stacked_disks.h.
31        Refer to that file and the structure it contains
32        for details of the model.
33        List of default parameters:
34         scale           = 0.01
35         radius          = 3000.0 [A]
36         core_thick      = 10.0 [A]
37         layer_thick     = 15.0 [A]
38         core_sld        = 4e-006 [1/A^(2)]
39         layer_sld       = -4e-007 [1/A^(2)]
40         solvent_sld     = 5e-006 [1/A^(2)]
41         n_stacking      = 1.0
42         sigma_d         = 0.0
43         background      = 0.001 [1/cm]
44         axis_theta      = 0.0 [rad]
45         axis_phi        = 0.0 [rad]
46
47    """
48       
49    def __init__(self):
50        """ Initialization """
51       
52        # Initialize BaseComponent first, then sphere
53        BaseComponent.__init__(self)
54        CStackedDisksModel.__init__(self)
55       
56        ## Name of the model
57        self.name = "StackedDisksModel"
58        ## Model description
59        self.description =""" One layer of disk consists of a core, a top layer, and a bottom layer.
60                radius =  the radius of the disk
61                core_thick = thickness of the core
62                layer_thick = thickness of a layer
63                core_sld = the SLD of the core
64                layer_sld = the SLD of the layers
65                n_stacking = the number of the disks
66                sigma_d =  Gaussian STD of d-spacing
67                solvent_sld = the SLD of the solvent"""
68       
69        ## Parameter details [units, min, max]
70        self.details = {}
71        self.details['scale'] = ['', None, None]
72        self.details['radius'] = ['[A]', None, None]
73        self.details['core_thick'] = ['[A]', None, None]
74        self.details['layer_thick'] = ['[A]', None, None]
75        self.details['core_sld'] = ['[1/A^(2)]', None, None]
76        self.details['layer_sld'] = ['[1/A^(2)]', None, None]
77        self.details['solvent_sld'] = ['[1/A^(2)]', None, None]
78        self.details['n_stacking'] = ['', None, None]
79        self.details['sigma_d'] = ['', None, None]
80        self.details['background'] = ['[1/cm]', None, None]
81        self.details['axis_theta'] = ['[rad]', None, None]
82        self.details['axis_phi'] = ['[rad]', None, None]
83
84        ## fittable parameters
85        self.fixed=['core_thick.width', 'layer_thick.width', 'radius.width', 'axis_theta.width', 'axis_phi.width']
86       
87        ## parameters with orientation
88        self.orientation_params =['axis_phi', 'axis_theta', 'axis_phi.width', 'axis_theta.width']
89   
90    def clone(self):
91        """ Return a identical copy of self """
92        return self._clone(StackedDisksModel())   
93       
94    def __getstate__(self):
95        """ return object state for pickling and copying """
96        model_state = {'params': self.params, 'dispersion': self.dispersion, 'log': self.log}
97       
98        return self.__dict__, model_state
99       
100    def __setstate__(self, state):
101        """ create object from pickled state """
102       
103        self.__dict__, model_state = state
104        self.params = model_state['params']
105        self.dispersion = model_state['dispersion']
106        self.log = model_state['log']
107       
108   
109    def run(self, x = 0.0):
110        """ Evaluate the model
111            @param x: input q, or [q,phi]
112            @return: scattering function P(q)
113        """
114       
115        return CStackedDisksModel.run(self, x)
116   
117    def runXY(self, x = 0.0):
118        """ Evaluate the model in cartesian coordinates
119            @param x: input q, or [qx, qy]
120            @return: scattering function P(q)
121        """
122       
123        return CStackedDisksModel.runXY(self, x)
124       
125    def evalDistribition(self, x = []):
126        """ Evaluate the model in cartesian coordinates
127            @param x: input q[], or [qx[], qy[]]
128            @return: scattering function P(q[])
129        """
130        return CStackedDisksModel.evalDistribition(self, x)
131       
132    def calculate_ER(self):
133        """ Calculate the effective radius for P(q)*S(q)
134            @return: the value of the effective radius
135        """       
136        return CStackedDisksModel.calculate_ER(self)
137       
138    def set_dispersion(self, parameter, dispersion):
139        """
140            Set the dispersion object for a model parameter
141            @param parameter: name of the parameter [string]
142            @dispersion: dispersion object of type DispersionModel
143        """
144        return CStackedDisksModel.set_dispersion(self, parameter, dispersion.cdisp)
145       
146   
147# End of file
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