1 | #!/usr/bin/env python |
---|
2 | |
---|
3 | ############################################################################## |
---|
4 | # This software was developed by the University of Tennessee as part of the |
---|
5 | # Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
---|
6 | # project funded by the US National Science Foundation. |
---|
7 | # |
---|
8 | # If you use DANSE applications to do scientific research that leads to |
---|
9 | # publication, we ask that you acknowledge the use of the software with the |
---|
10 | # following sentence: |
---|
11 | # |
---|
12 | # "This work benefited from DANSE software developed under NSF award DMR-0520547." |
---|
13 | # |
---|
14 | # copyright 2008, University of Tennessee |
---|
15 | ############################################################################## |
---|
16 | |
---|
17 | |
---|
18 | """ |
---|
19 | Provide functionality for a C extension model |
---|
20 | |
---|
21 | :WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
---|
22 | DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\SquareWell.h |
---|
23 | AND RE-RUN THE GENERATOR SCRIPT |
---|
24 | |
---|
25 | """ |
---|
26 | |
---|
27 | from sans.models.BaseComponent import BaseComponent |
---|
28 | from sans_extension.c_models import CSquareWellStructure |
---|
29 | import copy |
---|
30 | |
---|
31 | def create_SquareWellStructure(): |
---|
32 | obj = SquareWellStructure() |
---|
33 | #CSquareWellStructure.__init__(obj) is called by SquareWellStructure constructor |
---|
34 | return obj |
---|
35 | |
---|
36 | class SquareWellStructure(CSquareWellStructure, BaseComponent): |
---|
37 | """ |
---|
38 | Class that evaluates a SquareWellStructure model. |
---|
39 | This file was auto-generated from ..\c_extensions\SquareWell.h. |
---|
40 | Refer to that file and the structure it contains |
---|
41 | for details of the model. |
---|
42 | List of default parameters: |
---|
43 | effect_radius = 50.0 [A] |
---|
44 | volfraction = 0.04 |
---|
45 | welldepth = 1.5 [kT] |
---|
46 | wellwidth = 1.2 |
---|
47 | |
---|
48 | """ |
---|
49 | |
---|
50 | def __init__(self): |
---|
51 | """ Initialization """ |
---|
52 | |
---|
53 | # Initialize BaseComponent first, then sphere |
---|
54 | BaseComponent.__init__(self) |
---|
55 | #apply(CSquareWellStructure.__init__, (self,)) |
---|
56 | CSquareWellStructure.__init__(self) |
---|
57 | |
---|
58 | ## Name of the model |
---|
59 | self.name = "SquareWellStructure" |
---|
60 | ## Model description |
---|
61 | self.description =""" Structure Factor for interacting particles: . |
---|
62 | |
---|
63 | The interaction potential is |
---|
64 | |
---|
65 | U(r)= inf , r < 2R |
---|
66 | = -d , 2R <= r <=2Rw |
---|
67 | = 0 , r >= 2Rw |
---|
68 | |
---|
69 | R: effective radius (A)of the particle |
---|
70 | v: volume fraction |
---|
71 | d: well depth |
---|
72 | w: well width; multiples of the |
---|
73 | particle diameter |
---|
74 | |
---|
75 | Ref: Sharma, R. V.; Sharma, |
---|
76 | K. C., Physica, 1977, 89A, 213.""" |
---|
77 | |
---|
78 | ## Parameter details [units, min, max] |
---|
79 | self.details = {} |
---|
80 | self.details['effect_radius'] = ['[A]', None, None] |
---|
81 | self.details['volfraction'] = ['', None, None] |
---|
82 | self.details['welldepth'] = ['[kT]', None, None] |
---|
83 | self.details['wellwidth'] = ['', None, None] |
---|
84 | |
---|
85 | ## fittable parameters |
---|
86 | self.fixed=['effect_radius.width'] |
---|
87 | |
---|
88 | ## non-fittable parameters |
---|
89 | self.non_fittable = [] |
---|
90 | |
---|
91 | ## parameters with orientation |
---|
92 | self.orientation_params = [] |
---|
93 | |
---|
94 | def __reduce_ex__(self, proto): |
---|
95 | """ |
---|
96 | Overwrite the __reduce_ex__ of PyTypeObject *type call in the init of |
---|
97 | c model. |
---|
98 | """ |
---|
99 | return (create_SquareWellStructure,tuple()) |
---|
100 | |
---|
101 | def clone(self): |
---|
102 | """ Return a identical copy of self """ |
---|
103 | return self._clone(SquareWellStructure()) |
---|
104 | |
---|
105 | |
---|
106 | def run(self, x=0.0): |
---|
107 | """ |
---|
108 | Evaluate the model |
---|
109 | |
---|
110 | :param x: input q, or [q,phi] |
---|
111 | |
---|
112 | :return: scattering function P(q) |
---|
113 | |
---|
114 | """ |
---|
115 | |
---|
116 | return CSquareWellStructure.run(self, x) |
---|
117 | |
---|
118 | def runXY(self, x=0.0): |
---|
119 | """ |
---|
120 | Evaluate the model in cartesian coordinates |
---|
121 | |
---|
122 | :param x: input q, or [qx, qy] |
---|
123 | |
---|
124 | :return: scattering function P(q) |
---|
125 | |
---|
126 | """ |
---|
127 | |
---|
128 | return CSquareWellStructure.runXY(self, x) |
---|
129 | |
---|
130 | def evalDistribution(self, x=[]): |
---|
131 | """ |
---|
132 | Evaluate the model in cartesian coordinates |
---|
133 | |
---|
134 | :param x: input q[], or [qx[], qy[]] |
---|
135 | |
---|
136 | :return: scattering function P(q[]) |
---|
137 | |
---|
138 | """ |
---|
139 | return CSquareWellStructure.evalDistribution(self, x) |
---|
140 | |
---|
141 | def calculate_ER(self): |
---|
142 | """ |
---|
143 | Calculate the effective radius for P(q)*S(q) |
---|
144 | |
---|
145 | :return: the value of the effective radius |
---|
146 | |
---|
147 | """ |
---|
148 | return CSquareWellStructure.calculate_ER(self) |
---|
149 | |
---|
150 | def set_dispersion(self, parameter, dispersion): |
---|
151 | """ |
---|
152 | Set the dispersion object for a model parameter |
---|
153 | |
---|
154 | :param parameter: name of the parameter [string] |
---|
155 | :param dispersion: dispersion object of type DispersionModel |
---|
156 | |
---|
157 | """ |
---|
158 | return CSquareWellStructure.set_dispersion(self, parameter, dispersion.cdisp) |
---|
159 | |
---|
160 | |
---|
161 | # End of file |
---|