[ae3ce4e] | 1 | #!/usr/bin/env python |
---|
[95986b5] | 2 | |
---|
[79ac6f8] | 3 | ############################################################################## |
---|
| 4 | # This software was developed by the University of Tennessee as part of the |
---|
| 5 | # Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
---|
| 6 | # project funded by the US National Science Foundation. |
---|
| 7 | # |
---|
| 8 | # If you use DANSE applications to do scientific research that leads to |
---|
| 9 | # publication, we ask that you acknowledge the use of the software with the |
---|
| 10 | # following sentence: |
---|
| 11 | # |
---|
| 12 | # "This work benefited from DANSE software developed under NSF award DMR-0520547." |
---|
| 13 | # |
---|
| 14 | # copyright 2008, University of Tennessee |
---|
| 15 | ############################################################################## |
---|
[95986b5] | 16 | |
---|
| 17 | |
---|
[79ac6f8] | 18 | """ |
---|
| 19 | Provide functionality for a C extension model |
---|
[ae3ce4e] | 20 | |
---|
[79ac6f8] | 21 | :WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
---|
| 22 | DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\sphere.h |
---|
| 23 | AND RE-RUN THE GENERATOR SCRIPT |
---|
[ae3ce4e] | 24 | |
---|
| 25 | """ |
---|
| 26 | |
---|
| 27 | from sans.models.BaseComponent import BaseComponent |
---|
| 28 | from sans_extension.c_models import CSphereModel |
---|
| 29 | import copy |
---|
[96656e3] | 30 | |
---|
| 31 | def create_SphereModel(): |
---|
| 32 | obj = SphereModel() |
---|
| 33 | #CSphereModel.__init__(obj) is called by SphereModel constructor |
---|
| 34 | return obj |
---|
| 35 | |
---|
[ae3ce4e] | 36 | class SphereModel(CSphereModel, BaseComponent): |
---|
[79ac6f8] | 37 | """ |
---|
| 38 | Class that evaluates a SphereModel model. |
---|
| 39 | This file was auto-generated from ..\c_extensions\sphere.h. |
---|
| 40 | Refer to that file and the structure it contains |
---|
| 41 | for details of the model. |
---|
| 42 | List of default parameters: |
---|
[7dde98e] | 43 | scale = 1.0 |
---|
[1ed3834] | 44 | radius = 60.0 [A] |
---|
[f10063e] | 45 | sldSph = 2e-006 [1/A^(2)] |
---|
| 46 | sldSolv = 1e-006 [1/A^(2)] |
---|
[0824909] | 47 | background = 0.0 [1/cm] |
---|
[ae3ce4e] | 48 | |
---|
| 49 | """ |
---|
| 50 | |
---|
| 51 | def __init__(self): |
---|
| 52 | """ Initialization """ |
---|
| 53 | |
---|
| 54 | # Initialize BaseComponent first, then sphere |
---|
| 55 | BaseComponent.__init__(self) |
---|
[96656e3] | 56 | #apply(CSphereModel.__init__, (self,)) |
---|
[ae3ce4e] | 57 | CSphereModel.__init__(self) |
---|
| 58 | |
---|
| 59 | ## Name of the model |
---|
| 60 | self.name = "SphereModel" |
---|
[836fe6e] | 61 | ## Model description |
---|
[f10063e] | 62 | self.description ="""P(q)=(scale/V)*[3V(sldSph-sldSolv)*(sin(qR)-qRcos(qR)) |
---|
[1ed3834] | 63 | /(qR)^3]^(2)+bkg |
---|
| 64 | |
---|
| 65 | bkg:background, R: radius of sphere |
---|
[9316609] | 66 | V:The volume of the scatter |
---|
[f10063e] | 67 | sldSph: the SLD of the sphere |
---|
| 68 | sldSolv: the SLD of the solvent |
---|
[1ed3834] | 69 | """ |
---|
[836fe6e] | 70 | |
---|
[fe9c19b4] | 71 | ## Parameter details [units, min, max] |
---|
[ae3ce4e] | 72 | self.details = {} |
---|
| 73 | self.details['scale'] = ['', None, None] |
---|
[1ed3834] | 74 | self.details['radius'] = ['[A]', None, None] |
---|
[f10063e] | 75 | self.details['sldSph'] = ['[1/A^(2)]', None, None] |
---|
| 76 | self.details['sldSolv'] = ['[1/A^(2)]', None, None] |
---|
[0824909] | 77 | self.details['background'] = ['[1/cm]', None, None] |
---|
[7dde98e] | 78 | |
---|
[fe9c19b4] | 79 | ## fittable parameters |
---|
[836fe6e] | 80 | self.fixed=['radius.width'] |
---|
[25a608f5] | 81 | |
---|
[35aface] | 82 | ## non-fittable parameters |
---|
[96656e3] | 83 | self.non_fittable = [] |
---|
[35aface] | 84 | |
---|
[25a608f5] | 85 | ## parameters with orientation |
---|
[96656e3] | 86 | self.orientation_params = [] |
---|
[c7a7e1b] | 87 | |
---|
| 88 | def __setstate__(self, state): |
---|
| 89 | """ |
---|
| 90 | restore the state of a model from pickle |
---|
| 91 | """ |
---|
| 92 | self.__dict__, self.params, self.dispersion = state |
---|
| 93 | |
---|
[96656e3] | 94 | def __reduce_ex__(self, proto): |
---|
[79ac6f8] | 95 | """ |
---|
[96656e3] | 96 | Overwrite the __reduce_ex__ of PyTypeObject *type call in the init of |
---|
| 97 | c model. |
---|
[79ac6f8] | 98 | """ |
---|
[c7a7e1b] | 99 | state = (self.__dict__, self.params, self.dispersion) |
---|
| 100 | return (create_SphereModel,tuple(), state, None, None) |
---|
[fe9c19b4] | 101 | |
---|
[96656e3] | 102 | def clone(self): |
---|
| 103 | """ Return a identical copy of self """ |
---|
| 104 | return self._clone(SphereModel()) |
---|
[fe9c19b4] | 105 | |
---|
[ae3ce4e] | 106 | |
---|
[79ac6f8] | 107 | def run(self, x=0.0): |
---|
| 108 | """ |
---|
| 109 | Evaluate the model |
---|
| 110 | |
---|
| 111 | :param x: input q, or [q,phi] |
---|
| 112 | |
---|
| 113 | :return: scattering function P(q) |
---|
| 114 | |
---|
[ae3ce4e] | 115 | """ |
---|
| 116 | |
---|
| 117 | return CSphereModel.run(self, x) |
---|
| 118 | |
---|
[79ac6f8] | 119 | def runXY(self, x=0.0): |
---|
| 120 | """ |
---|
| 121 | Evaluate the model in cartesian coordinates |
---|
| 122 | |
---|
| 123 | :param x: input q, or [qx, qy] |
---|
| 124 | |
---|
| 125 | :return: scattering function P(q) |
---|
| 126 | |
---|
[ae3ce4e] | 127 | """ |
---|
| 128 | |
---|
| 129 | return CSphereModel.runXY(self, x) |
---|
[95986b5] | 130 | |
---|
[79ac6f8] | 131 | def evalDistribution(self, x=[]): |
---|
| 132 | """ |
---|
| 133 | Evaluate the model in cartesian coordinates |
---|
| 134 | |
---|
| 135 | :param x: input q[], or [qx[], qy[]] |
---|
| 136 | |
---|
| 137 | :return: scattering function P(q[]) |
---|
| 138 | |
---|
[9bd69098] | 139 | """ |
---|
[f9a1279] | 140 | return CSphereModel.evalDistribution(self, x) |
---|
[9bd69098] | 141 | |
---|
[5eb9154] | 142 | def calculate_ER(self): |
---|
[79ac6f8] | 143 | """ |
---|
| 144 | Calculate the effective radius for P(q)*S(q) |
---|
| 145 | |
---|
| 146 | :return: the value of the effective radius |
---|
| 147 | |
---|
[5eb9154] | 148 | """ |
---|
| 149 | return CSphereModel.calculate_ER(self) |
---|
| 150 | |
---|
[95986b5] | 151 | def set_dispersion(self, parameter, dispersion): |
---|
| 152 | """ |
---|
[79ac6f8] | 153 | Set the dispersion object for a model parameter |
---|
| 154 | |
---|
| 155 | :param parameter: name of the parameter [string] |
---|
| 156 | :param dispersion: dispersion object of type DispersionModel |
---|
| 157 | |
---|
[95986b5] | 158 | """ |
---|
| 159 | return CSphereModel.set_dispersion(self, parameter, dispersion.cdisp) |
---|
| 160 | |
---|
[ae3ce4e] | 161 | |
---|
| 162 | # End of file |
---|