source: sasview/sansmodels/src/sans/models/SphereModel.py @ 20f00bed

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Last change on this file since 20f00bed was 35aface, checked in by Jae Cho <jhjcho@…>, 14 years ago

addede new models and attr. non_fittable

  • Property mode set to 100644
File size: 4.9 KB
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[ae3ce4e]1#!/usr/bin/env python
[95986b5]2
[79ac6f8]3##############################################################################
4#       This software was developed by the University of Tennessee as part of the
5#       Distributed Data Analysis of Neutron Scattering Experiments (DANSE)
6#       project funded by the US National Science Foundation.
7#
8#       If you use DANSE applications to do scientific research that leads to
9#       publication, we ask that you acknowledge the use of the software with the
10#       following sentence:
11#
12#       "This work benefited from DANSE software developed under NSF award DMR-0520547."
13#
14#       copyright 2008, University of Tennessee
15##############################################################################
[95986b5]16
17
[79ac6f8]18"""
19Provide functionality for a C extension model
[ae3ce4e]20
[79ac6f8]21:WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY
22         DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\sphere.h
23         AND RE-RUN THE GENERATOR SCRIPT
[ae3ce4e]24
25"""
26
27from sans.models.BaseComponent import BaseComponent
28from sans_extension.c_models import CSphereModel
29import copy   
30   
31class SphereModel(CSphereModel, BaseComponent):
[79ac6f8]32    """
33    Class that evaluates a SphereModel model.
34    This file was auto-generated from ..\c_extensions\sphere.h.
35    Refer to that file and the structure it contains
36    for details of the model.
37    List of default parameters:
[7dde98e]38         scale           = 1.0
[1ed3834]39         radius          = 60.0 [A]
[f10063e]40         sldSph          = 2e-006 [1/A^(2)]
41         sldSolv         = 1e-006 [1/A^(2)]
[0824909]42         background      = 0.0 [1/cm]
[ae3ce4e]43
44    """
45       
46    def __init__(self):
47        """ Initialization """
48       
49        # Initialize BaseComponent first, then sphere
50        BaseComponent.__init__(self)
51        CSphereModel.__init__(self)
52       
53        ## Name of the model
54        self.name = "SphereModel"
[836fe6e]55        ## Model description
[f10063e]56        self.description ="""P(q)=(scale/V)*[3V(sldSph-sldSolv)*(sin(qR)-qRcos(qR))
[1ed3834]57                /(qR)^3]^(2)+bkg
58               
59                bkg:background, R: radius of sphere
[9316609]60                V:The volume of the scatter
[f10063e]61                sldSph: the SLD of the sphere
62                sldSolv: the SLD of the solvent
[1ed3834]63                """
[836fe6e]64       
[fe9c19b4]65        ## Parameter details [units, min, max]
[ae3ce4e]66        self.details = {}
67        self.details['scale'] = ['', None, None]
[1ed3834]68        self.details['radius'] = ['[A]', None, None]
[f10063e]69        self.details['sldSph'] = ['[1/A^(2)]', None, None]
70        self.details['sldSolv'] = ['[1/A^(2)]', None, None]
[0824909]71        self.details['background'] = ['[1/cm]', None, None]
[7dde98e]72
[fe9c19b4]73        ## fittable parameters
[836fe6e]74        self.fixed=['radius.width']
[25a608f5]75       
[35aface]76        ## non-fittable parameters
77        self.non_fittable=[]
78       
[25a608f5]79        ## parameters with orientation
80        self.orientation_params =[]
[ae3ce4e]81   
82    def clone(self):
83        """ Return a identical copy of self """
[95986b5]84        return self._clone(SphereModel())   
[fe9c19b4]85       
86    def __getstate__(self):
[79ac6f8]87        """
88        return object state for pickling and copying
89        """
[fe9c19b4]90        model_state = {'params': self.params, 'dispersion': self.dispersion, 'log': self.log}
91       
92        return self.__dict__, model_state
93       
94    def __setstate__(self, state):
[79ac6f8]95        """
96        create object from pickled state
97       
98        :param state: the state of the current model
99       
100        """
[fe9c19b4]101       
102        self.__dict__, model_state = state
103        self.params = model_state['params']
104        self.dispersion = model_state['dispersion']
105        self.log = model_state['log']
106       
[ae3ce4e]107   
[79ac6f8]108    def run(self, x=0.0):
109        """
110        Evaluate the model
111       
112        :param x: input q, or [q,phi]
113       
114        :return: scattering function P(q)
115       
[ae3ce4e]116        """
117       
118        return CSphereModel.run(self, x)
119   
[79ac6f8]120    def runXY(self, x=0.0):
121        """
122        Evaluate the model in cartesian coordinates
123       
124        :param x: input q, or [qx, qy]
125       
126        :return: scattering function P(q)
127       
[ae3ce4e]128        """
129       
130        return CSphereModel.runXY(self, x)
[95986b5]131       
[79ac6f8]132    def evalDistribution(self, x=[]):
133        """
134        Evaluate the model in cartesian coordinates
135       
136        :param x: input q[], or [qx[], qy[]]
137       
138        :return: scattering function P(q[])
139       
[9bd69098]140        """
[f9a1279]141        return CSphereModel.evalDistribution(self, x)
[9bd69098]142       
[5eb9154]143    def calculate_ER(self):
[79ac6f8]144        """
145        Calculate the effective radius for P(q)*S(q)
146       
147        :return: the value of the effective radius
148       
[5eb9154]149        """       
150        return CSphereModel.calculate_ER(self)
151       
[95986b5]152    def set_dispersion(self, parameter, dispersion):
153        """
[79ac6f8]154        Set the dispersion object for a model parameter
155       
156        :param parameter: name of the parameter [string]
157        :param dispersion: dispersion object of type DispersionModel
158       
[95986b5]159        """
160        return CSphereModel.set_dispersion(self, parameter, dispersion.cdisp)
161       
[ae3ce4e]162   
163# End of file
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