[eba9885] | 1 | #!/usr/bin/env python |
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| 2 | |
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[79ac6f8] | 3 | ############################################################################## |
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| 4 | # This software was developed by the University of Tennessee as part of the |
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| 5 | # Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
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| 6 | # project funded by the US National Science Foundation. |
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| 7 | # |
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| 8 | # If you use DANSE applications to do scientific research that leads to |
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| 9 | # publication, we ask that you acknowledge the use of the software with the |
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| 10 | # following sentence: |
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| 11 | # |
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| 12 | # "This work benefited from DANSE software developed under NSF award DMR-0520547." |
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| 13 | # |
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| 14 | # copyright 2008, University of Tennessee |
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| 15 | ############################################################################## |
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[eba9885] | 16 | |
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| 17 | |
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[79ac6f8] | 18 | """ |
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| 19 | Provide functionality for a C extension model |
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[eba9885] | 20 | |
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[79ac6f8] | 21 | :WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
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[b1c3295] | 22 | DO NOT MODIFY THIS FILE, MODIFY ../c_extensions/schulz.h |
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[79ac6f8] | 23 | AND RE-RUN THE GENERATOR SCRIPT |
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[eba9885] | 24 | |
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| 25 | """ |
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| 26 | |
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| 27 | from sans.models.BaseComponent import BaseComponent |
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[92df66f8] | 28 | from sans.models.sans_extension.c_models import CSchulz |
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[eba9885] | 29 | import copy |
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[96656e3] | 30 | |
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| 31 | def create_Schulz(): |
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| 32 | obj = Schulz() |
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| 33 | #CSchulz.__init__(obj) is called by Schulz constructor |
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| 34 | return obj |
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| 35 | |
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[eba9885] | 36 | class Schulz(CSchulz, BaseComponent): |
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[79ac6f8] | 37 | """ |
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| 38 | Class that evaluates a Schulz model. |
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[b1c3295] | 39 | This file was auto-generated from ../c_extensions/schulz.h. |
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[79ac6f8] | 40 | Refer to that file and the structure it contains |
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| 41 | for details of the model. |
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[b1c3295] | 42 | List of default parameters: |
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| 43 | scale = 1.0 |
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| 44 | sigma = 1.0 |
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| 45 | center = 0.0 |
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[eba9885] | 46 | |
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| 47 | """ |
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| 48 | |
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| 49 | def __init__(self): |
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| 50 | """ Initialization """ |
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| 51 | |
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| 52 | # Initialize BaseComponent first, then sphere |
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| 53 | BaseComponent.__init__(self) |
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[96656e3] | 54 | #apply(CSchulz.__init__, (self,)) |
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[eba9885] | 55 | CSchulz.__init__(self) |
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| 56 | |
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| 57 | ## Name of the model |
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| 58 | self.name = "Schulz" |
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| 59 | ## Model description |
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[b1c3295] | 60 | self.description =""" f(x)=scale * math.pow(z+1, z+1)*math.pow((R), z)* |
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| 61 | math.exp(-R*(z+1))/(center*gamma(z+1) |
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[eba9885] | 62 | z= math.pow[(1/(sigma/center),2]-1""" |
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| 63 | |
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[b1c3295] | 64 | ## Parameter details [units, min, max] |
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| 65 | self.details = {} |
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| 66 | self.details['scale'] = ['', None, None] |
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| 67 | self.details['sigma'] = ['', None, None] |
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| 68 | self.details['center'] = ['', None, None] |
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[eba9885] | 69 | |
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[fe9c19b4] | 70 | ## fittable parameters |
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[eba9885] | 71 | self.fixed=[] |
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| 72 | |
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[35aface] | 73 | ## non-fittable parameters |
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[96656e3] | 74 | self.non_fittable = [] |
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[35aface] | 75 | |
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[eba9885] | 76 | ## parameters with orientation |
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[96656e3] | 77 | self.orientation_params = [] |
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[c7a7e1b] | 78 | |
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| 79 | def __setstate__(self, state): |
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| 80 | """ |
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| 81 | restore the state of a model from pickle |
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| 82 | """ |
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| 83 | self.__dict__, self.params, self.dispersion = state |
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| 84 | |
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[96656e3] | 85 | def __reduce_ex__(self, proto): |
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[79ac6f8] | 86 | """ |
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[96656e3] | 87 | Overwrite the __reduce_ex__ of PyTypeObject *type call in the init of |
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| 88 | c model. |
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[79ac6f8] | 89 | """ |
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[c7a7e1b] | 90 | state = (self.__dict__, self.params, self.dispersion) |
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| 91 | return (create_Schulz,tuple(), state, None, None) |
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[fe9c19b4] | 92 | |
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[96656e3] | 93 | def clone(self): |
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| 94 | """ Return a identical copy of self """ |
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| 95 | return self._clone(Schulz()) |
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[fe9c19b4] | 96 | |
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[eba9885] | 97 | |
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[79ac6f8] | 98 | def run(self, x=0.0): |
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| 99 | """ |
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| 100 | Evaluate the model |
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| 101 | |
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| 102 | :param x: input q, or [q,phi] |
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| 103 | |
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| 104 | :return: scattering function P(q) |
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| 105 | |
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[eba9885] | 106 | """ |
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| 107 | |
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| 108 | return CSchulz.run(self, x) |
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| 109 | |
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[79ac6f8] | 110 | def runXY(self, x=0.0): |
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| 111 | """ |
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| 112 | Evaluate the model in cartesian coordinates |
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| 113 | |
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| 114 | :param x: input q, or [qx, qy] |
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| 115 | |
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| 116 | :return: scattering function P(q) |
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| 117 | |
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[eba9885] | 118 | """ |
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| 119 | |
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| 120 | return CSchulz.runXY(self, x) |
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| 121 | |
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[79ac6f8] | 122 | def evalDistribution(self, x=[]): |
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| 123 | """ |
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| 124 | Evaluate the model in cartesian coordinates |
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| 125 | |
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| 126 | :param x: input q[], or [qx[], qy[]] |
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| 127 | |
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| 128 | :return: scattering function P(q[]) |
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| 129 | |
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[eba9885] | 130 | """ |
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[f9a1279] | 131 | return CSchulz.evalDistribution(self, x) |
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[eba9885] | 132 | |
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[5eb9154] | 133 | def calculate_ER(self): |
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[79ac6f8] | 134 | """ |
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| 135 | Calculate the effective radius for P(q)*S(q) |
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| 136 | |
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| 137 | :return: the value of the effective radius |
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| 138 | |
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[5eb9154] | 139 | """ |
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| 140 | return CSchulz.calculate_ER(self) |
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| 141 | |
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[eba9885] | 142 | def set_dispersion(self, parameter, dispersion): |
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| 143 | """ |
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[79ac6f8] | 144 | Set the dispersion object for a model parameter |
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| 145 | |
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| 146 | :param parameter: name of the parameter [string] |
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| 147 | :param dispersion: dispersion object of type DispersionModel |
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| 148 | |
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[eba9885] | 149 | """ |
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| 150 | return CSchulz.set_dispersion(self, parameter, dispersion.cdisp) |
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| 151 | |
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| 152 | |
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[b1c3295] | 153 | # End of file |
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