[8a48713] | 1 | #!/usr/bin/env python |
---|
| 2 | |
---|
[79ac6f8] | 3 | ############################################################################## |
---|
| 4 | # This software was developed by the University of Tennessee as part of the |
---|
| 5 | # Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
---|
| 6 | # project funded by the US National Science Foundation. |
---|
| 7 | # |
---|
| 8 | # If you use DANSE applications to do scientific research that leads to |
---|
| 9 | # publication, we ask that you acknowledge the use of the software with the |
---|
| 10 | # following sentence: |
---|
| 11 | # |
---|
| 12 | # "This work benefited from DANSE software developed under NSF award DMR-0520547." |
---|
| 13 | # |
---|
| 14 | # copyright 2008, University of Tennessee |
---|
| 15 | ############################################################################## |
---|
[8a48713] | 16 | |
---|
| 17 | |
---|
[79ac6f8] | 18 | """ |
---|
| 19 | Provide functionality for a C extension model |
---|
[8a48713] | 20 | |
---|
[79ac6f8] | 21 | :WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
---|
| 22 | DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\parallelepiped.h |
---|
| 23 | AND RE-RUN THE GENERATOR SCRIPT |
---|
[8a48713] | 24 | |
---|
| 25 | """ |
---|
| 26 | |
---|
| 27 | from sans.models.BaseComponent import BaseComponent |
---|
| 28 | from sans_extension.c_models import CParallelepipedModel |
---|
| 29 | import copy |
---|
[96656e3] | 30 | |
---|
| 31 | def create_ParallelepipedModel(): |
---|
| 32 | obj = ParallelepipedModel() |
---|
| 33 | #CParallelepipedModel.__init__(obj) is called by ParallelepipedModel constructor |
---|
| 34 | return obj |
---|
| 35 | |
---|
[8a48713] | 36 | class ParallelepipedModel(CParallelepipedModel, BaseComponent): |
---|
[79ac6f8] | 37 | """ |
---|
| 38 | Class that evaluates a ParallelepipedModel model. |
---|
| 39 | This file was auto-generated from ..\c_extensions\parallelepiped.h. |
---|
| 40 | Refer to that file and the structure it contains |
---|
| 41 | for details of the model. |
---|
| 42 | List of default parameters: |
---|
[8a48713] | 43 | scale = 1.0 |
---|
[2cb89e7] | 44 | short_a = 35.0 [A] |
---|
[8e36cdd] | 45 | short_b = 75.0 [A] |
---|
| 46 | long_c = 400.0 [A] |
---|
[f10063e] | 47 | sldPipe = 6.3e-006 [1/A^(2)] |
---|
| 48 | sldSolv = 1e-006 [1/A^(2)] |
---|
[8a48713] | 49 | background = 0.0 [1/cm] |
---|
[4628e31] | 50 | parallel_theta = 0.0 [deg] |
---|
| 51 | parallel_phi = 0.0 [deg] |
---|
| 52 | parallel_psi = 0.0 [deg] |
---|
[8a48713] | 53 | |
---|
| 54 | """ |
---|
| 55 | |
---|
| 56 | def __init__(self): |
---|
| 57 | """ Initialization """ |
---|
| 58 | |
---|
| 59 | # Initialize BaseComponent first, then sphere |
---|
| 60 | BaseComponent.__init__(self) |
---|
[96656e3] | 61 | #apply(CParallelepipedModel.__init__, (self,)) |
---|
[8a48713] | 62 | CParallelepipedModel.__init__(self) |
---|
| 63 | |
---|
| 64 | ## Name of the model |
---|
| 65 | self.name = "ParallelepipedModel" |
---|
| 66 | ## Model description |
---|
[2cb89e7] | 67 | self.description =""" Form factor for a rectangular solid with uniform scattering length density. |
---|
[8a48713] | 68 | |
---|
| 69 | scale:Scale factor |
---|
[8e36cdd] | 70 | short_a: length of short edge [A] |
---|
| 71 | short_b: length of another short edge [A] |
---|
| 72 | long_c: length of long edge of the parallelepiped [A] |
---|
[f10063e] | 73 | sldPipe: Pipe_sld |
---|
| 74 | sldSolv: solvent_sld |
---|
[8a48713] | 75 | background:Incoherent Background [1/cm]""" |
---|
| 76 | |
---|
[fe9c19b4] | 77 | ## Parameter details [units, min, max] |
---|
[8a48713] | 78 | self.details = {} |
---|
| 79 | self.details['scale'] = ['', None, None] |
---|
[2cb89e7] | 80 | self.details['short_a'] = ['[A]', None, None] |
---|
[8e36cdd] | 81 | self.details['short_b'] = ['[A]', None, None] |
---|
| 82 | self.details['long_c'] = ['[A]', None, None] |
---|
[f10063e] | 83 | self.details['sldPipe'] = ['[1/A^(2)]', None, None] |
---|
| 84 | self.details['sldSolv'] = ['[1/A^(2)]', None, None] |
---|
[8a48713] | 85 | self.details['background'] = ['[1/cm]', None, None] |
---|
[4628e31] | 86 | self.details['parallel_theta'] = ['[deg]', None, None] |
---|
| 87 | self.details['parallel_phi'] = ['[deg]', None, None] |
---|
| 88 | self.details['parallel_psi'] = ['[deg]', None, None] |
---|
[8a48713] | 89 | |
---|
[fe9c19b4] | 90 | ## fittable parameters |
---|
[8e36cdd] | 91 | self.fixed=['short_a.width', 'short_b.width', 'long_c.width', 'parallel_phi.width', 'parallel_psi.width', 'parallel_theta.width'] |
---|
[8a48713] | 92 | |
---|
[35aface] | 93 | ## non-fittable parameters |
---|
[96656e3] | 94 | self.non_fittable = [] |
---|
[35aface] | 95 | |
---|
[8a48713] | 96 | ## parameters with orientation |
---|
[96656e3] | 97 | self.orientation_params = ['parallel_phi', 'parallel_psi', 'parallel_theta', 'parallel_phi.width', 'parallel_psi.width', 'parallel_theta.width'] |
---|
[c7a7e1b] | 98 | |
---|
| 99 | def __setstate__(self, state): |
---|
| 100 | """ |
---|
| 101 | restore the state of a model from pickle |
---|
| 102 | """ |
---|
| 103 | self.__dict__, self.params, self.dispersion = state |
---|
| 104 | |
---|
[96656e3] | 105 | def __reduce_ex__(self, proto): |
---|
[79ac6f8] | 106 | """ |
---|
[96656e3] | 107 | Overwrite the __reduce_ex__ of PyTypeObject *type call in the init of |
---|
| 108 | c model. |
---|
[79ac6f8] | 109 | """ |
---|
[c7a7e1b] | 110 | state = (self.__dict__, self.params, self.dispersion) |
---|
| 111 | return (create_ParallelepipedModel,tuple(), state, None, None) |
---|
[fe9c19b4] | 112 | |
---|
[96656e3] | 113 | def clone(self): |
---|
| 114 | """ Return a identical copy of self """ |
---|
| 115 | return self._clone(ParallelepipedModel()) |
---|
[fe9c19b4] | 116 | |
---|
[8a48713] | 117 | |
---|
[79ac6f8] | 118 | def run(self, x=0.0): |
---|
| 119 | """ |
---|
| 120 | Evaluate the model |
---|
| 121 | |
---|
| 122 | :param x: input q, or [q,phi] |
---|
| 123 | |
---|
| 124 | :return: scattering function P(q) |
---|
| 125 | |
---|
[8a48713] | 126 | """ |
---|
| 127 | |
---|
| 128 | return CParallelepipedModel.run(self, x) |
---|
| 129 | |
---|
[79ac6f8] | 130 | def runXY(self, x=0.0): |
---|
| 131 | """ |
---|
| 132 | Evaluate the model in cartesian coordinates |
---|
| 133 | |
---|
| 134 | :param x: input q, or [qx, qy] |
---|
| 135 | |
---|
| 136 | :return: scattering function P(q) |
---|
| 137 | |
---|
[8a48713] | 138 | """ |
---|
| 139 | |
---|
| 140 | return CParallelepipedModel.runXY(self, x) |
---|
| 141 | |
---|
[79ac6f8] | 142 | def evalDistribution(self, x=[]): |
---|
| 143 | """ |
---|
| 144 | Evaluate the model in cartesian coordinates |
---|
| 145 | |
---|
| 146 | :param x: input q[], or [qx[], qy[]] |
---|
| 147 | |
---|
| 148 | :return: scattering function P(q[]) |
---|
| 149 | |
---|
[9bd69098] | 150 | """ |
---|
[f9a1279] | 151 | return CParallelepipedModel.evalDistribution(self, x) |
---|
[9bd69098] | 152 | |
---|
[5eb9154] | 153 | def calculate_ER(self): |
---|
[79ac6f8] | 154 | """ |
---|
| 155 | Calculate the effective radius for P(q)*S(q) |
---|
| 156 | |
---|
| 157 | :return: the value of the effective radius |
---|
| 158 | |
---|
[5eb9154] | 159 | """ |
---|
| 160 | return CParallelepipedModel.calculate_ER(self) |
---|
| 161 | |
---|
[8a48713] | 162 | def set_dispersion(self, parameter, dispersion): |
---|
| 163 | """ |
---|
[79ac6f8] | 164 | Set the dispersion object for a model parameter |
---|
| 165 | |
---|
| 166 | :param parameter: name of the parameter [string] |
---|
| 167 | :param dispersion: dispersion object of type DispersionModel |
---|
| 168 | |
---|
[8a48713] | 169 | """ |
---|
| 170 | return CParallelepipedModel.set_dispersion(self, parameter, dispersion.cdisp) |
---|
| 171 | |
---|
| 172 | |
---|
| 173 | # End of file |
---|