[8a48713] | 1 | #!/usr/bin/env python |
---|
| 2 | |
---|
[79ac6f8] | 3 | ############################################################################## |
---|
| 4 | # This software was developed by the University of Tennessee as part of the |
---|
| 5 | # Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
---|
| 6 | # project funded by the US National Science Foundation. |
---|
| 7 | # |
---|
| 8 | # If you use DANSE applications to do scientific research that leads to |
---|
| 9 | # publication, we ask that you acknowledge the use of the software with the |
---|
| 10 | # following sentence: |
---|
| 11 | # |
---|
| 12 | # "This work benefited from DANSE software developed under NSF award DMR-0520547." |
---|
| 13 | # |
---|
| 14 | # copyright 2008, University of Tennessee |
---|
| 15 | ############################################################################## |
---|
[8a48713] | 16 | |
---|
| 17 | |
---|
[79ac6f8] | 18 | """ |
---|
| 19 | Provide functionality for a C extension model |
---|
[8a48713] | 20 | |
---|
[79ac6f8] | 21 | :WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
---|
| 22 | DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\parallelepiped.h |
---|
| 23 | AND RE-RUN THE GENERATOR SCRIPT |
---|
[8a48713] | 24 | |
---|
| 25 | """ |
---|
| 26 | |
---|
| 27 | from sans.models.BaseComponent import BaseComponent |
---|
| 28 | from sans_extension.c_models import CParallelepipedModel |
---|
| 29 | import copy |
---|
| 30 | |
---|
| 31 | class ParallelepipedModel(CParallelepipedModel, BaseComponent): |
---|
[79ac6f8] | 32 | """ |
---|
| 33 | Class that evaluates a ParallelepipedModel model. |
---|
| 34 | This file was auto-generated from ..\c_extensions\parallelepiped.h. |
---|
| 35 | Refer to that file and the structure it contains |
---|
| 36 | for details of the model. |
---|
| 37 | List of default parameters: |
---|
[8a48713] | 38 | scale = 1.0 |
---|
[2cb89e7] | 39 | short_a = 35.0 [A] |
---|
[8e36cdd] | 40 | short_b = 75.0 [A] |
---|
| 41 | long_c = 400.0 [A] |
---|
[f10063e] | 42 | sldPipe = 6.3e-006 [1/A^(2)] |
---|
| 43 | sldSolv = 1e-006 [1/A^(2)] |
---|
[8a48713] | 44 | background = 0.0 [1/cm] |
---|
[975ec8e] | 45 | parallel_theta = 0.0 [rad] |
---|
| 46 | parallel_phi = 0.0 [rad] |
---|
| 47 | parallel_psi = 0.0 [rad] |
---|
[8a48713] | 48 | |
---|
| 49 | """ |
---|
| 50 | |
---|
| 51 | def __init__(self): |
---|
| 52 | """ Initialization """ |
---|
| 53 | |
---|
| 54 | # Initialize BaseComponent first, then sphere |
---|
| 55 | BaseComponent.__init__(self) |
---|
| 56 | CParallelepipedModel.__init__(self) |
---|
| 57 | |
---|
| 58 | ## Name of the model |
---|
| 59 | self.name = "ParallelepipedModel" |
---|
| 60 | ## Model description |
---|
[2cb89e7] | 61 | self.description =""" Form factor for a rectangular solid with uniform scattering length density. |
---|
[8a48713] | 62 | |
---|
| 63 | scale:Scale factor |
---|
[8e36cdd] | 64 | short_a: length of short edge [A] |
---|
| 65 | short_b: length of another short edge [A] |
---|
| 66 | long_c: length of long edge of the parallelepiped [A] |
---|
[f10063e] | 67 | sldPipe: Pipe_sld |
---|
| 68 | sldSolv: solvent_sld |
---|
[8a48713] | 69 | background:Incoherent Background [1/cm]""" |
---|
| 70 | |
---|
[fe9c19b4] | 71 | ## Parameter details [units, min, max] |
---|
[8a48713] | 72 | self.details = {} |
---|
| 73 | self.details['scale'] = ['', None, None] |
---|
[2cb89e7] | 74 | self.details['short_a'] = ['[A]', None, None] |
---|
[8e36cdd] | 75 | self.details['short_b'] = ['[A]', None, None] |
---|
| 76 | self.details['long_c'] = ['[A]', None, None] |
---|
[f10063e] | 77 | self.details['sldPipe'] = ['[1/A^(2)]', None, None] |
---|
| 78 | self.details['sldSolv'] = ['[1/A^(2)]', None, None] |
---|
[8a48713] | 79 | self.details['background'] = ['[1/cm]', None, None] |
---|
| 80 | self.details['parallel_theta'] = ['[rad]', None, None] |
---|
| 81 | self.details['parallel_phi'] = ['[rad]', None, None] |
---|
[975ec8e] | 82 | self.details['parallel_psi'] = ['[rad]', None, None] |
---|
[8a48713] | 83 | |
---|
[fe9c19b4] | 84 | ## fittable parameters |
---|
[8e36cdd] | 85 | self.fixed=['short_a.width', 'short_b.width', 'long_c.width', 'parallel_phi.width', 'parallel_psi.width', 'parallel_theta.width'] |
---|
[8a48713] | 86 | |
---|
[35aface] | 87 | ## non-fittable parameters |
---|
| 88 | self.non_fittable=[] |
---|
| 89 | |
---|
[8a48713] | 90 | ## parameters with orientation |
---|
[975ec8e] | 91 | self.orientation_params =['parallel_phi', 'parallel_psi', 'parallel_theta', 'parallel_phi.width', 'parallel_psi.width', 'parallel_theta.width'] |
---|
[8a48713] | 92 | |
---|
| 93 | def clone(self): |
---|
| 94 | """ Return a identical copy of self """ |
---|
| 95 | return self._clone(ParallelepipedModel()) |
---|
[fe9c19b4] | 96 | |
---|
| 97 | def __getstate__(self): |
---|
[79ac6f8] | 98 | """ |
---|
| 99 | return object state for pickling and copying |
---|
| 100 | """ |
---|
[fe9c19b4] | 101 | model_state = {'params': self.params, 'dispersion': self.dispersion, 'log': self.log} |
---|
| 102 | |
---|
| 103 | return self.__dict__, model_state |
---|
| 104 | |
---|
| 105 | def __setstate__(self, state): |
---|
[79ac6f8] | 106 | """ |
---|
| 107 | create object from pickled state |
---|
| 108 | |
---|
| 109 | :param state: the state of the current model |
---|
| 110 | |
---|
| 111 | """ |
---|
[fe9c19b4] | 112 | |
---|
| 113 | self.__dict__, model_state = state |
---|
| 114 | self.params = model_state['params'] |
---|
| 115 | self.dispersion = model_state['dispersion'] |
---|
| 116 | self.log = model_state['log'] |
---|
| 117 | |
---|
[8a48713] | 118 | |
---|
[79ac6f8] | 119 | def run(self, x=0.0): |
---|
| 120 | """ |
---|
| 121 | Evaluate the model |
---|
| 122 | |
---|
| 123 | :param x: input q, or [q,phi] |
---|
| 124 | |
---|
| 125 | :return: scattering function P(q) |
---|
| 126 | |
---|
[8a48713] | 127 | """ |
---|
| 128 | |
---|
| 129 | return CParallelepipedModel.run(self, x) |
---|
| 130 | |
---|
[79ac6f8] | 131 | def runXY(self, x=0.0): |
---|
| 132 | """ |
---|
| 133 | Evaluate the model in cartesian coordinates |
---|
| 134 | |
---|
| 135 | :param x: input q, or [qx, qy] |
---|
| 136 | |
---|
| 137 | :return: scattering function P(q) |
---|
| 138 | |
---|
[8a48713] | 139 | """ |
---|
| 140 | |
---|
| 141 | return CParallelepipedModel.runXY(self, x) |
---|
| 142 | |
---|
[79ac6f8] | 143 | def evalDistribution(self, x=[]): |
---|
| 144 | """ |
---|
| 145 | Evaluate the model in cartesian coordinates |
---|
| 146 | |
---|
| 147 | :param x: input q[], or [qx[], qy[]] |
---|
| 148 | |
---|
| 149 | :return: scattering function P(q[]) |
---|
| 150 | |
---|
[9bd69098] | 151 | """ |
---|
[f9a1279] | 152 | return CParallelepipedModel.evalDistribution(self, x) |
---|
[9bd69098] | 153 | |
---|
[5eb9154] | 154 | def calculate_ER(self): |
---|
[79ac6f8] | 155 | """ |
---|
| 156 | Calculate the effective radius for P(q)*S(q) |
---|
| 157 | |
---|
| 158 | :return: the value of the effective radius |
---|
| 159 | |
---|
[5eb9154] | 160 | """ |
---|
| 161 | return CParallelepipedModel.calculate_ER(self) |
---|
| 162 | |
---|
[8a48713] | 163 | def set_dispersion(self, parameter, dispersion): |
---|
| 164 | """ |
---|
[79ac6f8] | 165 | Set the dispersion object for a model parameter |
---|
| 166 | |
---|
| 167 | :param parameter: name of the parameter [string] |
---|
| 168 | :param dispersion: dispersion object of type DispersionModel |
---|
| 169 | |
---|
[8a48713] | 170 | """ |
---|
| 171 | return CParallelepipedModel.set_dispersion(self, parameter, dispersion.cdisp) |
---|
| 172 | |
---|
| 173 | |
---|
| 174 | # End of file |
---|