[9ce41c6] | 1 | #!/usr/bin/env python |
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| 2 | """ |
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| 3 | This software was developed by the University of Tennessee as part of the |
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| 4 | Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
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| 5 | project funded by the US National Science Foundation. |
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| 6 | |
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| 7 | If you use DANSE applications to do scientific research that leads to |
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| 8 | publication, we ask that you acknowledge the use of the software with the |
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| 9 | following sentence: |
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| 10 | |
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| 11 | "This work benefited from DANSE software developed under NSF award DMR-0520547." |
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| 12 | |
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| 13 | copyright 2008, University of Tennessee |
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| 14 | """ |
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| 15 | |
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| 16 | """ Provide functionality for a C extension model |
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| 17 | |
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| 18 | WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
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| 19 | DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\oblate.h |
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| 20 | AND RE-RUN THE GENERATOR SCRIPT |
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| 21 | |
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| 22 | """ |
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| 23 | |
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| 24 | from sans.models.BaseComponent import BaseComponent |
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| 25 | from sans_extension.c_models import COblateModel |
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| 26 | import copy |
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| 27 | |
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| 28 | class OblateModel(COblateModel, BaseComponent): |
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| 29 | """ Class that evaluates a OblateModel model. |
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| 30 | This file was auto-generated from ..\c_extensions\oblate.h. |
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| 31 | Refer to that file and the structure it contains |
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| 32 | for details of the model. |
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| 33 | List of default parameters: |
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| 34 | scale = 1.0 |
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| 35 | major_core = 200.0 [A] |
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| 36 | minor_core = 20.0 [A] |
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| 37 | major_shell = 250.0 [A] |
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| 38 | minor_shell = 30.0 [A] |
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| 39 | contrast = 1e-006 [1/A²] |
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| 40 | sld_solvent = 6.3e-006 [1/A²] |
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| 41 | background = 0.001 [1/cm] |
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| 42 | axis_theta = 1.0 [rad] |
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| 43 | axis_phi = 1.0 [rad] |
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| 44 | |
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| 45 | """ |
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| 46 | |
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| 47 | def __init__(self): |
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| 48 | """ Initialization """ |
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| 49 | |
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| 50 | # Initialize BaseComponent first, then sphere |
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| 51 | BaseComponent.__init__(self) |
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| 52 | COblateModel.__init__(self) |
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| 53 | |
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| 54 | ## Name of the model |
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| 55 | self.name = "OblateModel" |
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| 56 | ## Model description |
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| 57 | self.description ="""[OblateCoreShellModel] Calculates the form factor for an oblate |
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| 58 | ellipsoid particle with a core_shell structure. |
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| 59 | The form factor is averaged over all possible |
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| 60 | orientations of the ellipsoid such that P(q) |
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| 61 | = scale*<f^2>/Vol + bkg, where f is the |
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| 62 | single particle scattering amplitude. |
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| 63 | [Parameters]: |
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| 64 | major_core = radius of major_core, |
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| 65 | minor_core = radius of minor_core, |
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| 66 | major_shell = radius of major_shell, |
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| 67 | minor_shell = radius of minor_shell, |
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| 68 | contrast = SLD_core - SLD_shell |
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| 69 | sld_solvent = SLD_solvent |
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| 70 | background = Incoherent bkg |
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| 71 | scale =scale |
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| 72 | Note:It is the users' responsibility to ensure |
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| 73 | that shell radii are larger than core radii.""" |
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| 74 | |
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| 75 | ## Parameter details [units, min, max] |
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| 76 | self.details = {} |
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| 77 | self.details['scale'] = ['', None, None] |
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| 78 | self.details['major_core'] = ['[A]', None, None] |
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| 79 | self.details['minor_core'] = ['[A]', None, None] |
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| 80 | self.details['major_shell'] = ['[A]', None, None] |
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| 81 | self.details['minor_shell'] = ['[A]', None, None] |
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| 82 | self.details['contrast'] = ['[1/A²]', None, None] |
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| 83 | self.details['sld_solvent'] = ['[1/A²]', None, None] |
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| 84 | self.details['background'] = ['[1/cm]', None, None] |
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| 85 | self.details['axis_theta'] = ['[rad]', None, None] |
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| 86 | self.details['axis_phi'] = ['[rad]', None, None] |
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| 87 | |
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| 88 | ## fittable parameters |
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| 89 | self.fixed=['major_core.width', 'minor_core.width', 'major_shell.width', 'minor_shell.width'] |
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| 90 | |
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| 91 | ## parameters with orientation |
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| 92 | self.orientation_params =['axis_phi', 'axis_theta', 'axis_phi.width', 'axis_theta.width'] |
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| 93 | |
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| 94 | def clone(self): |
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| 95 | """ Return a identical copy of self """ |
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| 96 | return self._clone(OblateModel()) |
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| 97 | |
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| 98 | def run(self, x = 0.0): |
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| 99 | """ Evaluate the model |
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| 100 | @param x: input q, or [q,phi] |
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| 101 | @return: scattering function P(q) |
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| 102 | """ |
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| 103 | |
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| 104 | return COblateModel.run(self, x) |
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| 105 | |
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| 106 | def runXY(self, x = 0.0): |
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| 107 | """ Evaluate the model in cartesian coordinates |
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| 108 | @param x: input q, or [qx, qy] |
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| 109 | @return: scattering function P(q) |
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| 110 | """ |
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| 111 | |
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| 112 | return COblateModel.runXY(self, x) |
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| 113 | |
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| 114 | def evalDistribition(self, x = []): |
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| 115 | """ Evaluate the model in cartesian coordinates |
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| 116 | @param x: input q[], or [qx[], qy[]] |
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| 117 | @return: scattering function P(q[]) |
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| 118 | """ |
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| 119 | return COblateModel.evalDistribition(self, x) |
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| 120 | |
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| 121 | def calculate_ER(self): |
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| 122 | """ Calculate the effective radius for P(q)*S(q) |
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| 123 | @return: the value of the effective radius |
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| 124 | """ |
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| 125 | return COblateModel.calculate_ER(self) |
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| 126 | |
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| 127 | def set_dispersion(self, parameter, dispersion): |
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| 128 | """ |
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| 129 | Set the dispersion object for a model parameter |
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| 130 | @param parameter: name of the parameter [string] |
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| 131 | @dispersion: dispersion object of type DispersionModel |
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| 132 | """ |
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| 133 | return COblateModel.set_dispersion(self, parameter, dispersion.cdisp) |
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| 134 | |
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| 135 | |
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| 136 | # End of file |
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