source: sasview/sansmodels/src/sans/models/MultiShellModel.py @ 8622241

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Last change on this file since 8622241 was 35aface, checked in by Jae Cho <jhjcho@…>, 14 years ago

addede new models and attr. non_fittable

  • Property mode set to 100644
File size: 5.4 KB
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1#!/usr/bin/env python
2
3##############################################################################
4#       This software was developed by the University of Tennessee as part of the
5#       Distributed Data Analysis of Neutron Scattering Experiments (DANSE)
6#       project funded by the US National Science Foundation.
7#
8#       If you use DANSE applications to do scientific research that leads to
9#       publication, we ask that you acknowledge the use of the software with the
10#       following sentence:
11#
12#       "This work benefited from DANSE software developed under NSF award DMR-0520547."
13#
14#       copyright 2008, University of Tennessee
15##############################################################################
16
17
18"""
19Provide functionality for a C extension model
20
21:WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY
22         DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\multishell.h
23         AND RE-RUN THE GENERATOR SCRIPT
24
25"""
26
27from sans.models.BaseComponent import BaseComponent
28from sans_extension.c_models import CMultiShellModel
29import copy   
30   
31class MultiShellModel(CMultiShellModel, BaseComponent):
32    """
33    Class that evaluates a MultiShellModel model.
34    This file was auto-generated from ..\c_extensions\multishell.h.
35    Refer to that file and the structure it contains
36    for details of the model.
37    List of default parameters:
38         scale           = 1.0
39         core_radius     = 60.0 [A]
40         s_thickness     = 10.0 [A]
41         w_thickness     = 10.0 [A]
42         core_sld        = 6.4e-006 [1/A^(2)]
43         shell_sld       = 4e-007 [1/A^(2)]
44         n_pairs         = 2.0
45         background      = 0.0 [1/cm]
46
47    """
48       
49    def __init__(self):
50        """ Initialization """
51       
52        # Initialize BaseComponent first, then sphere
53        BaseComponent.__init__(self)
54        CMultiShellModel.__init__(self)
55       
56        ## Name of the model
57        self.name = "MultiShellModel"
58        ## Model description
59        self.description =""" MultiShell (Sphere) Model (or Multilamellar Vesicles): Model parameters;
60                scale : scale factor
61                core_radius : Core radius of the multishell
62                s_thickness: shell thickness
63                w_thickness: water thickness
64                core_sld: core scattering length density
65                shell_sld: shell scattering length density
66                n_pairs:number of pairs of water/shell
67                background: incoherent background"""
68       
69        ## Parameter details [units, min, max]
70        self.details = {}
71        self.details['scale'] = ['', None, None]
72        self.details['core_radius'] = ['[A]', None, None]
73        self.details['s_thickness'] = ['[A]', None, None]
74        self.details['w_thickness'] = ['[A]', None, None]
75        self.details['core_sld'] = ['[1/A^(2)]', None, None]
76        self.details['shell_sld'] = ['[1/A^(2)]', None, None]
77        self.details['n_pairs'] = ['', None, None]
78        self.details['background'] = ['[1/cm]', None, None]
79
80        ## fittable parameters
81        self.fixed=['core_radius.width', 's_thickness.width', 'w_thickness.width']
82       
83        ## non-fittable parameters
84        self.non_fittable=[]
85       
86        ## parameters with orientation
87        self.orientation_params =[]
88   
89    def clone(self):
90        """ Return a identical copy of self """
91        return self._clone(MultiShellModel())   
92       
93    def __getstate__(self):
94        """
95        return object state for pickling and copying
96        """
97        model_state = {'params': self.params, 'dispersion': self.dispersion, 'log': self.log}
98       
99        return self.__dict__, model_state
100       
101    def __setstate__(self, state):
102        """
103        create object from pickled state
104       
105        :param state: the state of the current model
106       
107        """
108       
109        self.__dict__, model_state = state
110        self.params = model_state['params']
111        self.dispersion = model_state['dispersion']
112        self.log = model_state['log']
113       
114   
115    def run(self, x=0.0):
116        """
117        Evaluate the model
118       
119        :param x: input q, or [q,phi]
120       
121        :return: scattering function P(q)
122       
123        """
124       
125        return CMultiShellModel.run(self, x)
126   
127    def runXY(self, x=0.0):
128        """
129        Evaluate the model in cartesian coordinates
130       
131        :param x: input q, or [qx, qy]
132       
133        :return: scattering function P(q)
134       
135        """
136       
137        return CMultiShellModel.runXY(self, x)
138       
139    def evalDistribution(self, x=[]):
140        """
141        Evaluate the model in cartesian coordinates
142       
143        :param x: input q[], or [qx[], qy[]]
144       
145        :return: scattering function P(q[])
146       
147        """
148        return CMultiShellModel.evalDistribution(self, x)
149       
150    def calculate_ER(self):
151        """
152        Calculate the effective radius for P(q)*S(q)
153       
154        :return: the value of the effective radius
155       
156        """       
157        return CMultiShellModel.calculate_ER(self)
158       
159    def set_dispersion(self, parameter, dispersion):
160        """
161        Set the dispersion object for a model parameter
162       
163        :param parameter: name of the parameter [string]
164        :param dispersion: dispersion object of type DispersionModel
165       
166        """
167        return CMultiShellModel.set_dispersion(self, parameter, dispersion.cdisp)
168       
169   
170# End of file
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