1 | #!/usr/bin/env python |
---|
2 | """ |
---|
3 | This software was developed by the University of Tennessee as part of the |
---|
4 | Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
---|
5 | project funded by the US National Science Foundation. |
---|
6 | |
---|
7 | If you use DANSE applications to do scientific research that leads to |
---|
8 | publication, we ask that you acknowledge the use of the software with the |
---|
9 | following sentence: |
---|
10 | |
---|
11 | "This work benefited from DANSE software developed under NSF award DMR-0520547." |
---|
12 | |
---|
13 | copyright 2008, University of Tennessee |
---|
14 | """ |
---|
15 | |
---|
16 | """ Provide functionality for a C extension model |
---|
17 | |
---|
18 | WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
---|
19 | DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\lamellarPS.h |
---|
20 | AND RE-RUN THE GENERATOR SCRIPT |
---|
21 | |
---|
22 | """ |
---|
23 | |
---|
24 | from sans.models.BaseComponent import BaseComponent |
---|
25 | from sans_extension.c_models import CLamellarPSModel |
---|
26 | import copy |
---|
27 | |
---|
28 | class LamellarPSModel(CLamellarPSModel, BaseComponent): |
---|
29 | """ Class that evaluates a LamellarPSModel model. |
---|
30 | This file was auto-generated from ..\c_extensions\lamellarPS.h. |
---|
31 | Refer to that file and the structure it contains |
---|
32 | for details of the model. |
---|
33 | List of default parameters: |
---|
34 | scale = 1.0 |
---|
35 | spacing = 400.0 [A] |
---|
36 | delta = 30.0 [A] |
---|
37 | sigma = 0.15 |
---|
38 | contrast = 5.3e-006 [1/A²] |
---|
39 | n_plates = 20.0 |
---|
40 | caille = 0.1 |
---|
41 | background = 0.0 [1/cm] |
---|
42 | |
---|
43 | """ |
---|
44 | |
---|
45 | def __init__(self): |
---|
46 | """ Initialization """ |
---|
47 | |
---|
48 | # Initialize BaseComponent first, then sphere |
---|
49 | BaseComponent.__init__(self) |
---|
50 | CLamellarPSModel.__init__(self) |
---|
51 | |
---|
52 | ## Name of the model |
---|
53 | self.name = "LamellarPSModel" |
---|
54 | ## Model description |
---|
55 | self.description ="""[Concentrated Lamellar Form Factor] Calculates the scattered |
---|
56 | intensity from a lyotropic lamellar phase. |
---|
57 | The intensity (form factor and structure |
---|
58 | factor)calculated is for lamellae of |
---|
59 | uniform scattering length density that |
---|
60 | are randomly distributed in solution |
---|
61 | (a powder average). The lamellae thickness |
---|
62 | is polydisperse. The model can also |
---|
63 | be applied to large, multi-lamellar vesicles. |
---|
64 | No resolution smeared version is included |
---|
65 | in the structure factor of this model. |
---|
66 | *Parameters: spacing = repeat spacing, |
---|
67 | delta = bilayer thickness, |
---|
68 | sigma = variation in bilayer thickness |
---|
69 | contrast = SLD_solvent - SLD_bilayer |
---|
70 | n_plate = # of Lamellar plates |
---|
71 | caille = Caille parameter (<0.8 or <1) |
---|
72 | background = incoherent bgd |
---|
73 | scale = scale factor""" |
---|
74 | |
---|
75 | ## Parameter details [units, min, max] |
---|
76 | self.details = {} |
---|
77 | self.details['scale'] = ['', None, None] |
---|
78 | self.details['spacing'] = ['[A]', None, None] |
---|
79 | self.details['delta'] = ['[A]', None, None] |
---|
80 | self.details['sigma'] = ['', None, None] |
---|
81 | self.details['contrast'] = ['[1/A²]', None, None] |
---|
82 | self.details['n_plates'] = ['', None, None] |
---|
83 | self.details['caille'] = ['', None, None] |
---|
84 | self.details['background'] = ['[1/cm]', None, None] |
---|
85 | |
---|
86 | ## fittable parameters |
---|
87 | self.fixed=['spacing.width'] |
---|
88 | |
---|
89 | ## parameters with orientation |
---|
90 | self.orientation_params =[] |
---|
91 | |
---|
92 | def clone(self): |
---|
93 | """ Return a identical copy of self """ |
---|
94 | return self._clone(LamellarPSModel()) |
---|
95 | |
---|
96 | def run(self, x = 0.0): |
---|
97 | """ Evaluate the model |
---|
98 | @param x: input q, or [q,phi] |
---|
99 | @return: scattering function P(q) |
---|
100 | """ |
---|
101 | |
---|
102 | return CLamellarPSModel.run(self, x) |
---|
103 | |
---|
104 | def runXY(self, x = 0.0): |
---|
105 | """ Evaluate the model in cartesian coordinates |
---|
106 | @param x: input q, or [qx, qy] |
---|
107 | @return: scattering function P(q) |
---|
108 | """ |
---|
109 | |
---|
110 | return CLamellarPSModel.runXY(self, x) |
---|
111 | |
---|
112 | def evalDistribition(self, x = []): |
---|
113 | """ Evaluate the model in cartesian coordinates |
---|
114 | @param x: input q[], or [qx[], qy[]] |
---|
115 | @return: scattering function P(q[]) |
---|
116 | """ |
---|
117 | return CLamellarPSModel.evalDistribition(self, x) |
---|
118 | |
---|
119 | def set_dispersion(self, parameter, dispersion): |
---|
120 | """ |
---|
121 | Set the dispersion object for a model parameter |
---|
122 | @param parameter: name of the parameter [string] |
---|
123 | @dispersion: dispersion object of type DispersionModel |
---|
124 | """ |
---|
125 | return CLamellarPSModel.set_dispersion(self, parameter, dispersion.cdisp) |
---|
126 | |
---|
127 | |
---|
128 | # End of file |
---|