[27a0771] | 1 | #!/usr/bin/env python |
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| 2 | """ |
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| 3 | This software was developed by the University of Tennessee as part of the |
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| 4 | Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
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| 5 | project funded by the US National Science Foundation. |
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| 6 | |
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| 7 | If you use DANSE applications to do scientific research that leads to |
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| 8 | publication, we ask that you acknowledge the use of the software with the |
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| 9 | following sentence: |
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| 10 | |
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| 11 | "This work benefited from DANSE software developed under NSF award DMR-0520547." |
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| 12 | |
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| 13 | copyright 2008, University of Tennessee |
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| 14 | """ |
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| 15 | |
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| 16 | """ Provide functionality for a C extension model |
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| 17 | |
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| 18 | WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
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| 19 | DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\lamellarPS.h |
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| 20 | AND RE-RUN THE GENERATOR SCRIPT |
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| 21 | |
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| 22 | """ |
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| 23 | |
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| 24 | from sans.models.BaseComponent import BaseComponent |
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| 25 | from sans_extension.c_models import CLamellarPSModel |
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| 26 | import copy |
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| 27 | |
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| 28 | class LamellarPSModel(CLamellarPSModel, BaseComponent): |
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| 29 | """ Class that evaluates a LamellarPSModel model. |
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| 30 | This file was auto-generated from ..\c_extensions\lamellarPS.h. |
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| 31 | Refer to that file and the structure it contains |
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| 32 | for details of the model. |
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| 33 | List of default parameters: |
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| 34 | scale = 1.0 |
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| 35 | spacing = 400.0 [A] |
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| 36 | delta = 30.0 [A] |
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| 37 | contrast = 5.3e-006 [1/A²] |
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| 38 | n_plates = 20.0 |
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| 39 | caille = 0.1 |
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| 40 | background = 0.0 [1/cm] |
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| 41 | |
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| 42 | """ |
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| 43 | |
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| 44 | def __init__(self): |
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| 45 | """ Initialization """ |
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| 46 | |
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| 47 | # Initialize BaseComponent first, then sphere |
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| 48 | BaseComponent.__init__(self) |
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| 49 | CLamellarPSModel.__init__(self) |
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| 50 | |
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| 51 | ## Name of the model |
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| 52 | self.name = "LamellarPSModel" |
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| 53 | ## Model description |
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[9188cc1] | 54 | self.description ="""[Concentrated Lamellar Form Factor] Calculates the scattered |
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| 55 | intensity from a lyotropic lamellar phase. |
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| 56 | The intensity (form factor and structure |
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| 57 | factor)calculated is for lamellae of |
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| 58 | uniform scattering length density that |
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| 59 | are randomly distributed in solution |
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| 60 | (a powder average). The lamellae thickness |
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| 61 | is polydisperse. The model can also |
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[fbe5d3e] | 62 | be applied to large, multi-lamellar vesicles. |
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| 63 | No resolution smeared version is included |
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| 64 | in the structure factor of this model. |
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| 65 | *Parameters: spacing = repeat spacing, |
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| 66 | delta = bilayer thickness, |
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| 67 | contrast = SLD_solvent - SLD_bilayer |
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| 68 | n_plate = # of Lamellar plates |
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| 69 | caille = Caille parameter (<0.8 or <1) |
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| 70 | background = incoherent bgd |
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| 71 | scale = scale factor""" |
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[27a0771] | 72 | |
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| 73 | ## Parameter details [units, min, max] |
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| 74 | self.details = {} |
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| 75 | self.details['scale'] = ['', None, None] |
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| 76 | self.details['spacing'] = ['[A]', None, None] |
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| 77 | self.details['delta'] = ['[A]', None, None] |
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| 78 | self.details['contrast'] = ['[1/A²]', None, None] |
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| 79 | self.details['n_plates'] = ['', None, None] |
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| 80 | self.details['caille'] = ['', None, None] |
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| 81 | self.details['background'] = ['[1/cm]', None, None] |
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| 82 | |
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| 83 | ## fittable parameters |
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[c1c29b6] | 84 | self.fixed=['delta.width', 'spacing.width'] |
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[27a0771] | 85 | |
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| 86 | ## parameters with orientation |
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| 87 | self.orientation_params =[] |
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| 88 | |
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| 89 | def clone(self): |
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| 90 | """ Return a identical copy of self """ |
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| 91 | return self._clone(LamellarPSModel()) |
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| 92 | |
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| 93 | def run(self, x = 0.0): |
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| 94 | """ Evaluate the model |
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| 95 | @param x: input q, or [q,phi] |
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| 96 | @return: scattering function P(q) |
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| 97 | """ |
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| 98 | |
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| 99 | return CLamellarPSModel.run(self, x) |
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| 100 | |
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| 101 | def runXY(self, x = 0.0): |
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| 102 | """ Evaluate the model in cartesian coordinates |
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| 103 | @param x: input q, or [qx, qy] |
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| 104 | @return: scattering function P(q) |
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| 105 | """ |
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| 106 | |
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| 107 | return CLamellarPSModel.runXY(self, x) |
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| 108 | |
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[9bd69098] | 109 | def evalDistribition(self, x = []): |
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| 110 | """ Evaluate the model in cartesian coordinates |
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| 111 | @param x: input q[], or [qx[], qy[]] |
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| 112 | @return: scattering function P(q[]) |
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| 113 | """ |
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| 114 | return CLamellarPSModel.evalDistribition(self, x) |
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| 115 | |
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[5eb9154] | 116 | def calculate_ER(self): |
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| 117 | """ Calculate the effective radius for P(q)*S(q) |
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| 118 | @return: the value of the effective radius |
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| 119 | """ |
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| 120 | return CLamellarPSModel.calculate_ER(self) |
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| 121 | |
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[27a0771] | 122 | def set_dispersion(self, parameter, dispersion): |
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| 123 | """ |
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| 124 | Set the dispersion object for a model parameter |
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| 125 | @param parameter: name of the parameter [string] |
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| 126 | @dispersion: dispersion object of type DispersionModel |
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| 127 | """ |
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| 128 | return CLamellarPSModel.set_dispersion(self, parameter, dispersion.cdisp) |
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| 129 | |
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| 130 | |
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| 131 | # End of file |
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