1 | #!/usr/bin/env python |
---|
2 | |
---|
3 | ############################################################################## |
---|
4 | # This software was developed by the University of Tennessee as part of the |
---|
5 | # Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
---|
6 | # project funded by the US National Science Foundation. |
---|
7 | # |
---|
8 | # If you use DANSE applications to do scientific research that leads to |
---|
9 | # publication, we ask that you acknowledge the use of the software with the |
---|
10 | # following sentence: |
---|
11 | # |
---|
12 | # "This work benefited from DANSE software developed under NSF award DMR-0520547." |
---|
13 | # |
---|
14 | # copyright 2008, University of Tennessee |
---|
15 | ############################################################################## |
---|
16 | |
---|
17 | |
---|
18 | """ |
---|
19 | Provide functionality for a C extension model |
---|
20 | |
---|
21 | :WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
---|
22 | DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\lamellarFF_HG.h |
---|
23 | AND RE-RUN THE GENERATOR SCRIPT |
---|
24 | |
---|
25 | """ |
---|
26 | |
---|
27 | from sans.models.BaseComponent import BaseComponent |
---|
28 | from sans_extension.c_models import CLamellarFFHGModel |
---|
29 | import copy |
---|
30 | |
---|
31 | class LamellarFFHGModel(CLamellarFFHGModel, BaseComponent): |
---|
32 | """ |
---|
33 | Class that evaluates a LamellarFFHGModel model. |
---|
34 | This file was auto-generated from ..\c_extensions\lamellarFF_HG.h. |
---|
35 | Refer to that file and the structure it contains |
---|
36 | for details of the model. |
---|
37 | List of default parameters: |
---|
38 | scale = 1.0 |
---|
39 | t_length = 15.0 [A] |
---|
40 | h_thickness = 10.0 [A] |
---|
41 | sld_tail = 4e-007 [1/A^(2)] |
---|
42 | sld_head = 3e-006 [1/A^(2)] |
---|
43 | sld_solvent = 6e-006 [1/A^(2)] |
---|
44 | background = 0.0 [1/cm] |
---|
45 | |
---|
46 | """ |
---|
47 | |
---|
48 | def __init__(self): |
---|
49 | """ Initialization """ |
---|
50 | |
---|
51 | # Initialize BaseComponent first, then sphere |
---|
52 | BaseComponent.__init__(self) |
---|
53 | CLamellarFFHGModel.__init__(self) |
---|
54 | |
---|
55 | ## Name of the model |
---|
56 | self.name = "LamellarFFHGModel" |
---|
57 | ## Model description |
---|
58 | self.description =""" Parameters: t_length = tail length, h_thickness = head thickness, |
---|
59 | scale = Scale factor, |
---|
60 | background = incoherent Background |
---|
61 | sld_tail = tail scattering length density , |
---|
62 | sld_solvent = solvent scattering length density. |
---|
63 | NOTE: The total bilayer thickness |
---|
64 | = 2(h_thickness+ t_length). |
---|
65 | """ |
---|
66 | |
---|
67 | ## Parameter details [units, min, max] |
---|
68 | self.details = {} |
---|
69 | self.details['scale'] = ['', None, None] |
---|
70 | self.details['t_length'] = ['[A]', None, None] |
---|
71 | self.details['h_thickness'] = ['[A]', None, None] |
---|
72 | self.details['sld_tail'] = ['[1/A^(2)]', None, None] |
---|
73 | self.details['sld_head'] = ['[1/A^(2)]', None, None] |
---|
74 | self.details['sld_solvent'] = ['[1/A^(2)]', None, None] |
---|
75 | self.details['background'] = ['[1/cm]', None, None] |
---|
76 | |
---|
77 | ## fittable parameters |
---|
78 | self.fixed=['t_length.width', 'h_thickness.width'] |
---|
79 | |
---|
80 | ## parameters with orientation |
---|
81 | self.orientation_params =[] |
---|
82 | |
---|
83 | def clone(self): |
---|
84 | """ Return a identical copy of self """ |
---|
85 | return self._clone(LamellarFFHGModel()) |
---|
86 | |
---|
87 | def __getstate__(self): |
---|
88 | """ |
---|
89 | return object state for pickling and copying |
---|
90 | """ |
---|
91 | model_state = {'params': self.params, 'dispersion': self.dispersion, 'log': self.log} |
---|
92 | |
---|
93 | return self.__dict__, model_state |
---|
94 | |
---|
95 | def __setstate__(self, state): |
---|
96 | """ |
---|
97 | create object from pickled state |
---|
98 | |
---|
99 | :param state: the state of the current model |
---|
100 | |
---|
101 | """ |
---|
102 | |
---|
103 | self.__dict__, model_state = state |
---|
104 | self.params = model_state['params'] |
---|
105 | self.dispersion = model_state['dispersion'] |
---|
106 | self.log = model_state['log'] |
---|
107 | |
---|
108 | |
---|
109 | def run(self, x=0.0): |
---|
110 | """ |
---|
111 | Evaluate the model |
---|
112 | |
---|
113 | :param x: input q, or [q,phi] |
---|
114 | |
---|
115 | :return: scattering function P(q) |
---|
116 | |
---|
117 | """ |
---|
118 | |
---|
119 | return CLamellarFFHGModel.run(self, x) |
---|
120 | |
---|
121 | def runXY(self, x=0.0): |
---|
122 | """ |
---|
123 | Evaluate the model in cartesian coordinates |
---|
124 | |
---|
125 | :param x: input q, or [qx, qy] |
---|
126 | |
---|
127 | :return: scattering function P(q) |
---|
128 | |
---|
129 | """ |
---|
130 | |
---|
131 | return CLamellarFFHGModel.runXY(self, x) |
---|
132 | |
---|
133 | def evalDistribution(self, x=[]): |
---|
134 | """ |
---|
135 | Evaluate the model in cartesian coordinates |
---|
136 | |
---|
137 | :param x: input q[], or [qx[], qy[]] |
---|
138 | |
---|
139 | :return: scattering function P(q[]) |
---|
140 | |
---|
141 | """ |
---|
142 | return CLamellarFFHGModel.evalDistribution(self, x) |
---|
143 | |
---|
144 | def calculate_ER(self): |
---|
145 | """ |
---|
146 | Calculate the effective radius for P(q)*S(q) |
---|
147 | |
---|
148 | :return: the value of the effective radius |
---|
149 | |
---|
150 | """ |
---|
151 | return CLamellarFFHGModel.calculate_ER(self) |
---|
152 | |
---|
153 | def set_dispersion(self, parameter, dispersion): |
---|
154 | """ |
---|
155 | Set the dispersion object for a model parameter |
---|
156 | |
---|
157 | :param parameter: name of the parameter [string] |
---|
158 | :param dispersion: dispersion object of type DispersionModel |
---|
159 | |
---|
160 | """ |
---|
161 | return CLamellarFFHGModel.set_dispersion(self, parameter, dispersion.cdisp) |
---|
162 | |
---|
163 | |
---|
164 | # End of file |
---|