[34c3020] | 1 | #!/usr/bin/env python |
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| 2 | |
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[79ac6f8] | 3 | ############################################################################## |
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| 4 | # This software was developed by the University of Tennessee as part of the |
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| 5 | # Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
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| 6 | # project funded by the US National Science Foundation. |
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| 7 | # |
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| 8 | # If you use DANSE applications to do scientific research that leads to |
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| 9 | # publication, we ask that you acknowledge the use of the software with the |
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| 10 | # following sentence: |
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| 11 | # |
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| 12 | # "This work benefited from DANSE software developed under NSF award DMR-0520547." |
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| 13 | # |
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| 14 | # copyright 2008, University of Tennessee |
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| 15 | ############################################################################## |
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[34c3020] | 16 | |
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| 17 | |
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[79ac6f8] | 18 | """ |
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| 19 | Provide functionality for a C extension model |
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[34c3020] | 20 | |
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[79ac6f8] | 21 | :WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
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[b1c3295] | 22 | DO NOT MODIFY THIS FILE, MODIFY ../c_extensions/lamellarFF_HG.h |
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[79ac6f8] | 23 | AND RE-RUN THE GENERATOR SCRIPT |
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[34c3020] | 24 | |
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| 25 | """ |
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| 26 | |
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| 27 | from sans.models.BaseComponent import BaseComponent |
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[92df66f8] | 28 | from sans.models.sans_extension.c_models import CLamellarFFHGModel |
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[34c3020] | 29 | import copy |
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[96656e3] | 30 | |
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| 31 | def create_LamellarFFHGModel(): |
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| 32 | obj = LamellarFFHGModel() |
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| 33 | #CLamellarFFHGModel.__init__(obj) is called by LamellarFFHGModel constructor |
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| 34 | return obj |
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| 35 | |
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[34c3020] | 36 | class LamellarFFHGModel(CLamellarFFHGModel, BaseComponent): |
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[79ac6f8] | 37 | """ |
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| 38 | Class that evaluates a LamellarFFHGModel model. |
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[b1c3295] | 39 | This file was auto-generated from ../c_extensions/lamellarFF_HG.h. |
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[79ac6f8] | 40 | Refer to that file and the structure it contains |
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| 41 | for details of the model. |
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[b1c3295] | 42 | List of default parameters: |
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| 43 | scale = 1.0 |
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| 44 | t_length = 15.0 [A] |
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| 45 | h_thickness = 10.0 [A] |
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| 46 | sld_tail = 4e-07 [1/A^(2)] |
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| 47 | sld_head = 3e-06 [1/A^(2)] |
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| 48 | sld_solvent = 6e-06 [1/A^(2)] |
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| 49 | background = 0.0 [1/cm] |
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[34c3020] | 50 | |
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| 51 | """ |
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| 52 | |
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| 53 | def __init__(self): |
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| 54 | """ Initialization """ |
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| 55 | |
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| 56 | # Initialize BaseComponent first, then sphere |
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| 57 | BaseComponent.__init__(self) |
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[96656e3] | 58 | #apply(CLamellarFFHGModel.__init__, (self,)) |
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[34c3020] | 59 | CLamellarFFHGModel.__init__(self) |
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| 60 | |
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| 61 | ## Name of the model |
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| 62 | self.name = "LamellarFFHGModel" |
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| 63 | ## Model description |
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[b1c3295] | 64 | self.description =""" Parameters: t_length = tail length, h_thickness = head thickness, |
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| 65 | scale = Scale factor, |
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| 66 | background = incoherent Background |
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| 67 | sld_tail = tail scattering length density , |
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| 68 | sld_solvent = solvent scattering length density. |
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| 69 | NOTE: The total bilayer thickness |
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| 70 | = 2(h_thickness+ t_length). |
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[b4679de] | 71 | """ |
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[34c3020] | 72 | |
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[b1c3295] | 73 | ## Parameter details [units, min, max] |
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| 74 | self.details = {} |
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| 75 | self.details['scale'] = ['', None, None] |
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| 76 | self.details['t_length'] = ['[A]', None, None] |
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| 77 | self.details['h_thickness'] = ['[A]', None, None] |
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| 78 | self.details['sld_tail'] = ['[1/A^(2)]', None, None] |
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| 79 | self.details['sld_head'] = ['[1/A^(2)]', None, None] |
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| 80 | self.details['sld_solvent'] = ['[1/A^(2)]', None, None] |
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| 81 | self.details['background'] = ['[1/cm]', None, None] |
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[34c3020] | 82 | |
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[fe9c19b4] | 83 | ## fittable parameters |
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[34c3020] | 84 | self.fixed=['t_length.width', 'h_thickness.width'] |
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| 85 | |
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[35aface] | 86 | ## non-fittable parameters |
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[96656e3] | 87 | self.non_fittable = [] |
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[35aface] | 88 | |
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[34c3020] | 89 | ## parameters with orientation |
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[96656e3] | 90 | self.orientation_params = [] |
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[c7a7e1b] | 91 | |
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| 92 | def __setstate__(self, state): |
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| 93 | """ |
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| 94 | restore the state of a model from pickle |
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| 95 | """ |
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| 96 | self.__dict__, self.params, self.dispersion = state |
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| 97 | |
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[96656e3] | 98 | def __reduce_ex__(self, proto): |
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[79ac6f8] | 99 | """ |
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[96656e3] | 100 | Overwrite the __reduce_ex__ of PyTypeObject *type call in the init of |
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| 101 | c model. |
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[79ac6f8] | 102 | """ |
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[c7a7e1b] | 103 | state = (self.__dict__, self.params, self.dispersion) |
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| 104 | return (create_LamellarFFHGModel,tuple(), state, None, None) |
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[fe9c19b4] | 105 | |
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[96656e3] | 106 | def clone(self): |
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| 107 | """ Return a identical copy of self """ |
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| 108 | return self._clone(LamellarFFHGModel()) |
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[fe9c19b4] | 109 | |
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[34c3020] | 110 | |
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[79ac6f8] | 111 | def run(self, x=0.0): |
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| 112 | """ |
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| 113 | Evaluate the model |
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| 114 | |
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| 115 | :param x: input q, or [q,phi] |
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| 116 | |
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| 117 | :return: scattering function P(q) |
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| 118 | |
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[34c3020] | 119 | """ |
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| 120 | |
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| 121 | return CLamellarFFHGModel.run(self, x) |
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| 122 | |
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[79ac6f8] | 123 | def runXY(self, x=0.0): |
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| 124 | """ |
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| 125 | Evaluate the model in cartesian coordinates |
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| 126 | |
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| 127 | :param x: input q, or [qx, qy] |
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| 128 | |
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| 129 | :return: scattering function P(q) |
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| 130 | |
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[34c3020] | 131 | """ |
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| 132 | |
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| 133 | return CLamellarFFHGModel.runXY(self, x) |
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| 134 | |
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[79ac6f8] | 135 | def evalDistribution(self, x=[]): |
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| 136 | """ |
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| 137 | Evaluate the model in cartesian coordinates |
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| 138 | |
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| 139 | :param x: input q[], or [qx[], qy[]] |
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| 140 | |
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| 141 | :return: scattering function P(q[]) |
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| 142 | |
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[9bd69098] | 143 | """ |
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[f9a1279] | 144 | return CLamellarFFHGModel.evalDistribution(self, x) |
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[9bd69098] | 145 | |
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[5eb9154] | 146 | def calculate_ER(self): |
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[79ac6f8] | 147 | """ |
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| 148 | Calculate the effective radius for P(q)*S(q) |
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| 149 | |
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| 150 | :return: the value of the effective radius |
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| 151 | |
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[5eb9154] | 152 | """ |
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| 153 | return CLamellarFFHGModel.calculate_ER(self) |
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| 154 | |
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[34c3020] | 155 | def set_dispersion(self, parameter, dispersion): |
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| 156 | """ |
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[79ac6f8] | 157 | Set the dispersion object for a model parameter |
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| 158 | |
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| 159 | :param parameter: name of the parameter [string] |
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| 160 | :param dispersion: dispersion object of type DispersionModel |
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| 161 | |
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[34c3020] | 162 | """ |
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| 163 | return CLamellarFFHGModel.set_dispersion(self, parameter, dispersion.cdisp) |
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| 164 | |
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| 165 | |
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[b1c3295] | 166 | # End of file |
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