[793c988] | 1 | #!/usr/bin/env python |
---|
| 2 | |
---|
[79ac6f8] | 3 | ############################################################################## |
---|
| 4 | # This software was developed by the University of Tennessee as part of the |
---|
| 5 | # Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
---|
| 6 | # project funded by the US National Science Foundation. |
---|
| 7 | # |
---|
| 8 | # If you use DANSE applications to do scientific research that leads to |
---|
| 9 | # publication, we ask that you acknowledge the use of the software with the |
---|
| 10 | # following sentence: |
---|
| 11 | # |
---|
| 12 | # "This work benefited from DANSE software developed under NSF award DMR-0520547." |
---|
| 13 | # |
---|
| 14 | # copyright 2008, University of Tennessee |
---|
| 15 | ############################################################################## |
---|
[793c988] | 16 | |
---|
| 17 | |
---|
[79ac6f8] | 18 | """ |
---|
| 19 | Provide functionality for a C extension model |
---|
[793c988] | 20 | |
---|
[79ac6f8] | 21 | :WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
---|
| 22 | DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\hollow_cylinder.h |
---|
| 23 | AND RE-RUN THE GENERATOR SCRIPT |
---|
[793c988] | 24 | |
---|
| 25 | """ |
---|
| 26 | |
---|
| 27 | from sans.models.BaseComponent import BaseComponent |
---|
| 28 | from sans_extension.c_models import CHollowCylinderModel |
---|
| 29 | import copy |
---|
[96656e3] | 30 | |
---|
| 31 | def create_HollowCylinderModel(): |
---|
| 32 | obj = HollowCylinderModel() |
---|
| 33 | #CHollowCylinderModel.__init__(obj) is called by HollowCylinderModel constructor |
---|
| 34 | return obj |
---|
| 35 | |
---|
[793c988] | 36 | class HollowCylinderModel(CHollowCylinderModel, BaseComponent): |
---|
[79ac6f8] | 37 | """ |
---|
| 38 | Class that evaluates a HollowCylinderModel model. |
---|
| 39 | This file was auto-generated from ..\c_extensions\hollow_cylinder.h. |
---|
| 40 | Refer to that file and the structure it contains |
---|
| 41 | for details of the model. |
---|
| 42 | List of default parameters: |
---|
[793c988] | 43 | scale = 1.0 |
---|
| 44 | core_radius = 20.0 [A] |
---|
[e2afadf] | 45 | radius = 30.0 [A] |
---|
[793c988] | 46 | length = 400.0 [A] |
---|
[f10063e] | 47 | sldCyl = 6.3e-006 [1/A^(2)] |
---|
| 48 | sldSolv = 1e-006 [1/A^(2)] |
---|
[793c988] | 49 | background = 0.01 [1/cm] |
---|
[4628e31] | 50 | axis_theta = 90.0 [deg] |
---|
| 51 | axis_phi = 0.0 [deg] |
---|
[793c988] | 52 | |
---|
| 53 | """ |
---|
| 54 | |
---|
| 55 | def __init__(self): |
---|
| 56 | """ Initialization """ |
---|
| 57 | |
---|
| 58 | # Initialize BaseComponent first, then sphere |
---|
| 59 | BaseComponent.__init__(self) |
---|
[96656e3] | 60 | #apply(CHollowCylinderModel.__init__, (self,)) |
---|
[793c988] | 61 | CHollowCylinderModel.__init__(self) |
---|
| 62 | |
---|
| 63 | ## Name of the model |
---|
| 64 | self.name = "HollowCylinderModel" |
---|
| 65 | ## Model description |
---|
[7ad9887] | 66 | self.description =""" P(q) = scale*<f*f>/Vol + bkg, where f is the scattering amplitude. |
---|
| 67 | core_radius = the radius of core |
---|
| 68 | radius = the radius of shell |
---|
| 69 | length = the total length of the cylinder |
---|
[f10063e] | 70 | sldCyl = SLD of the shell |
---|
| 71 | sldSolv = SLD of the solvent |
---|
[7ad9887] | 72 | background = incoherent background""" |
---|
[793c988] | 73 | |
---|
[fe9c19b4] | 74 | ## Parameter details [units, min, max] |
---|
[793c988] | 75 | self.details = {} |
---|
| 76 | self.details['scale'] = ['', None, None] |
---|
| 77 | self.details['core_radius'] = ['[A]', None, None] |
---|
[e2afadf] | 78 | self.details['radius'] = ['[A]', None, None] |
---|
[793c988] | 79 | self.details['length'] = ['[A]', None, None] |
---|
[f10063e] | 80 | self.details['sldCyl'] = ['[1/A^(2)]', None, None] |
---|
| 81 | self.details['sldSolv'] = ['[1/A^(2)]', None, None] |
---|
[793c988] | 82 | self.details['background'] = ['[1/cm]', None, None] |
---|
[4628e31] | 83 | self.details['axis_theta'] = ['[deg]', None, None] |
---|
| 84 | self.details['axis_phi'] = ['[deg]', None, None] |
---|
[793c988] | 85 | |
---|
[fe9c19b4] | 86 | ## fittable parameters |
---|
[e2afadf] | 87 | self.fixed=['axis_phi.width', 'axis_theta.width', 'length.width', 'core_radius.width', 'radius'] |
---|
[793c988] | 88 | |
---|
[35aface] | 89 | ## non-fittable parameters |
---|
[96656e3] | 90 | self.non_fittable = [] |
---|
[35aface] | 91 | |
---|
[793c988] | 92 | ## parameters with orientation |
---|
[96656e3] | 93 | self.orientation_params = ['axis_phi', 'axis_theta', 'axis_phi.width', 'axis_theta.width'] |
---|
[c7a7e1b] | 94 | |
---|
| 95 | def __setstate__(self, state): |
---|
| 96 | """ |
---|
| 97 | restore the state of a model from pickle |
---|
| 98 | """ |
---|
| 99 | self.__dict__, self.params, self.dispersion = state |
---|
| 100 | |
---|
[96656e3] | 101 | def __reduce_ex__(self, proto): |
---|
[79ac6f8] | 102 | """ |
---|
[96656e3] | 103 | Overwrite the __reduce_ex__ of PyTypeObject *type call in the init of |
---|
| 104 | c model. |
---|
[79ac6f8] | 105 | """ |
---|
[c7a7e1b] | 106 | state = (self.__dict__, self.params, self.dispersion) |
---|
| 107 | return (create_HollowCylinderModel,tuple(), state, None, None) |
---|
[fe9c19b4] | 108 | |
---|
[96656e3] | 109 | def clone(self): |
---|
| 110 | """ Return a identical copy of self """ |
---|
| 111 | return self._clone(HollowCylinderModel()) |
---|
[fe9c19b4] | 112 | |
---|
[793c988] | 113 | |
---|
[79ac6f8] | 114 | def run(self, x=0.0): |
---|
| 115 | """ |
---|
| 116 | Evaluate the model |
---|
| 117 | |
---|
| 118 | :param x: input q, or [q,phi] |
---|
| 119 | |
---|
| 120 | :return: scattering function P(q) |
---|
| 121 | |
---|
[793c988] | 122 | """ |
---|
| 123 | |
---|
| 124 | return CHollowCylinderModel.run(self, x) |
---|
| 125 | |
---|
[79ac6f8] | 126 | def runXY(self, x=0.0): |
---|
| 127 | """ |
---|
| 128 | Evaluate the model in cartesian coordinates |
---|
| 129 | |
---|
| 130 | :param x: input q, or [qx, qy] |
---|
| 131 | |
---|
| 132 | :return: scattering function P(q) |
---|
| 133 | |
---|
[793c988] | 134 | """ |
---|
| 135 | |
---|
| 136 | return CHollowCylinderModel.runXY(self, x) |
---|
| 137 | |
---|
[79ac6f8] | 138 | def evalDistribution(self, x=[]): |
---|
| 139 | """ |
---|
| 140 | Evaluate the model in cartesian coordinates |
---|
| 141 | |
---|
| 142 | :param x: input q[], or [qx[], qy[]] |
---|
| 143 | |
---|
| 144 | :return: scattering function P(q[]) |
---|
| 145 | |
---|
[9bd69098] | 146 | """ |
---|
[f9a1279] | 147 | return CHollowCylinderModel.evalDistribution(self, x) |
---|
[9bd69098] | 148 | |
---|
[5eb9154] | 149 | def calculate_ER(self): |
---|
[79ac6f8] | 150 | """ |
---|
| 151 | Calculate the effective radius for P(q)*S(q) |
---|
| 152 | |
---|
| 153 | :return: the value of the effective radius |
---|
| 154 | |
---|
[5eb9154] | 155 | """ |
---|
| 156 | return CHollowCylinderModel.calculate_ER(self) |
---|
| 157 | |
---|
[793c988] | 158 | def set_dispersion(self, parameter, dispersion): |
---|
| 159 | """ |
---|
[79ac6f8] | 160 | Set the dispersion object for a model parameter |
---|
| 161 | |
---|
| 162 | :param parameter: name of the parameter [string] |
---|
| 163 | :param dispersion: dispersion object of type DispersionModel |
---|
| 164 | |
---|
[793c988] | 165 | """ |
---|
| 166 | return CHollowCylinderModel.set_dispersion(self, parameter, dispersion.cdisp) |
---|
| 167 | |
---|
| 168 | |
---|
| 169 | # End of file |
---|