source: sasview/sansmodels/src/sans/models/HollowCylinderModel.py @ 339ce67

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Last change on this file since 339ce67 was 35aface, checked in by Jae Cho <jhjcho@…>, 14 years ago

addede new models and attr. non_fittable

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File size: 5.6 KB
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[793c988]1#!/usr/bin/env python
2
[79ac6f8]3##############################################################################
4#       This software was developed by the University of Tennessee as part of the
5#       Distributed Data Analysis of Neutron Scattering Experiments (DANSE)
6#       project funded by the US National Science Foundation.
7#
8#       If you use DANSE applications to do scientific research that leads to
9#       publication, we ask that you acknowledge the use of the software with the
10#       following sentence:
11#
12#       "This work benefited from DANSE software developed under NSF award DMR-0520547."
13#
14#       copyright 2008, University of Tennessee
15##############################################################################
[793c988]16
17
[79ac6f8]18"""
19Provide functionality for a C extension model
[793c988]20
[79ac6f8]21:WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY
22         DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\hollow_cylinder.h
23         AND RE-RUN THE GENERATOR SCRIPT
[793c988]24
25"""
26
27from sans.models.BaseComponent import BaseComponent
28from sans_extension.c_models import CHollowCylinderModel
29import copy   
30   
31class HollowCylinderModel(CHollowCylinderModel, BaseComponent):
[79ac6f8]32    """
33    Class that evaluates a HollowCylinderModel model.
34    This file was auto-generated from ..\c_extensions\hollow_cylinder.h.
35    Refer to that file and the structure it contains
36    for details of the model.
37    List of default parameters:
[793c988]38         scale           = 1.0
39         core_radius     = 20.0 [A]
[e2afadf]40         radius          = 30.0 [A]
[793c988]41         length          = 400.0 [A]
[f10063e]42         sldCyl          = 6.3e-006 [1/A^(2)]
43         sldSolv         = 1e-006 [1/A^(2)]
[793c988]44         background      = 0.01 [1/cm]
45         axis_theta      = 1.57 [rad]
46         axis_phi        = 0.0 [rad]
47
48    """
49       
50    def __init__(self):
51        """ Initialization """
52       
53        # Initialize BaseComponent first, then sphere
54        BaseComponent.__init__(self)
55        CHollowCylinderModel.__init__(self)
56       
57        ## Name of the model
58        self.name = "HollowCylinderModel"
59        ## Model description
[7ad9887]60        self.description =""" P(q) = scale*<f*f>/Vol + bkg, where f is the scattering amplitude.
61                core_radius = the radius of core
62                radius = the radius of shell
63                length = the total length of the cylinder
[f10063e]64                sldCyl = SLD of the shell
65                sldSolv = SLD of the solvent
[7ad9887]66                background = incoherent background"""
[793c988]67       
[fe9c19b4]68        ## Parameter details [units, min, max]
[793c988]69        self.details = {}
70        self.details['scale'] = ['', None, None]
71        self.details['core_radius'] = ['[A]', None, None]
[e2afadf]72        self.details['radius'] = ['[A]', None, None]
[793c988]73        self.details['length'] = ['[A]', None, None]
[f10063e]74        self.details['sldCyl'] = ['[1/A^(2)]', None, None]
75        self.details['sldSolv'] = ['[1/A^(2)]', None, None]
[793c988]76        self.details['background'] = ['[1/cm]', None, None]
77        self.details['axis_theta'] = ['[rad]', None, None]
78        self.details['axis_phi'] = ['[rad]', None, None]
79
[fe9c19b4]80        ## fittable parameters
[e2afadf]81        self.fixed=['axis_phi.width', 'axis_theta.width', 'length.width', 'core_radius.width', 'radius']
[793c988]82       
[35aface]83        ## non-fittable parameters
84        self.non_fittable=[]
85       
[793c988]86        ## parameters with orientation
87        self.orientation_params =['axis_phi', 'axis_theta', 'axis_phi.width', 'axis_theta.width']
88   
89    def clone(self):
90        """ Return a identical copy of self """
91        return self._clone(HollowCylinderModel())   
[fe9c19b4]92       
93    def __getstate__(self):
[79ac6f8]94        """
95        return object state for pickling and copying
96        """
[fe9c19b4]97        model_state = {'params': self.params, 'dispersion': self.dispersion, 'log': self.log}
98       
99        return self.__dict__, model_state
100       
101    def __setstate__(self, state):
[79ac6f8]102        """
103        create object from pickled state
104       
105        :param state: the state of the current model
106       
107        """
[fe9c19b4]108       
109        self.__dict__, model_state = state
110        self.params = model_state['params']
111        self.dispersion = model_state['dispersion']
112        self.log = model_state['log']
113       
[793c988]114   
[79ac6f8]115    def run(self, x=0.0):
116        """
117        Evaluate the model
118       
119        :param x: input q, or [q,phi]
120       
121        :return: scattering function P(q)
122       
[793c988]123        """
124       
125        return CHollowCylinderModel.run(self, x)
126   
[79ac6f8]127    def runXY(self, x=0.0):
128        """
129        Evaluate the model in cartesian coordinates
130       
131        :param x: input q, or [qx, qy]
132       
133        :return: scattering function P(q)
134       
[793c988]135        """
136       
137        return CHollowCylinderModel.runXY(self, x)
138       
[79ac6f8]139    def evalDistribution(self, x=[]):
140        """
141        Evaluate the model in cartesian coordinates
142       
143        :param x: input q[], or [qx[], qy[]]
144       
145        :return: scattering function P(q[])
146       
[9bd69098]147        """
[f9a1279]148        return CHollowCylinderModel.evalDistribution(self, x)
[9bd69098]149       
[5eb9154]150    def calculate_ER(self):
[79ac6f8]151        """
152        Calculate the effective radius for P(q)*S(q)
153       
154        :return: the value of the effective radius
155       
[5eb9154]156        """       
157        return CHollowCylinderModel.calculate_ER(self)
158       
[793c988]159    def set_dispersion(self, parameter, dispersion):
160        """
[79ac6f8]161        Set the dispersion object for a model parameter
162       
163        :param parameter: name of the parameter [string]
164        :param dispersion: dispersion object of type DispersionModel
165       
[793c988]166        """
167        return CHollowCylinderModel.set_dispersion(self, parameter, dispersion.cdisp)
168       
169   
170# End of file
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