[1bbf2ac] | 1 | #!/usr/bin/env python |
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| 2 | """ |
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| 3 | This software was developed by the University of Tennessee as part of the |
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| 4 | Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
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| 5 | project funded by the US National Science Foundation. |
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| 6 | |
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| 7 | If you use DANSE applications to do scientific research that leads to |
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| 8 | publication, we ask that you acknowledge the use of the software with the |
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| 9 | following sentence: |
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| 10 | |
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| 11 | "This work benefited from DANSE software developed under NSF award DMR-0520547." |
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| 12 | |
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| 13 | copyright 2008, University of Tennessee |
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| 14 | """ |
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| 15 | |
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| 16 | """ Provide functionality for a C extension model |
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| 17 | |
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| 18 | WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
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[42ae1d9] | 19 | DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\HayterMSA.h |
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[1bbf2ac] | 20 | AND RE-RUN THE GENERATOR SCRIPT |
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| 21 | |
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| 22 | """ |
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| 23 | |
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| 24 | from sans.models.BaseComponent import BaseComponent |
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| 25 | from sans_extension.c_models import CHayterMSAStructure |
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| 26 | import copy |
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| 27 | |
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| 28 | class HayterMSAStructure(CHayterMSAStructure, BaseComponent): |
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| 29 | """ Class that evaluates a HayterMSAStructure model. |
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[fe9c19b4] | 30 | This file was auto-generated from ..\c_extensions\HayterMSA.h. |
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| 31 | Refer to that file and the structure it contains |
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| 32 | for details of the model. |
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| 33 | List of default parameters: |
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[5eb9154] | 34 | effect_radius = 20.75 [A] |
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[1bbf2ac] | 35 | charge = 19.0 |
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| 36 | volfraction = 0.0192 |
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[0824909] | 37 | temperature = 318.16 [K] |
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| 38 | saltconc = 0.0 [M] |
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[1bbf2ac] | 39 | dielectconst = 71.08 |
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| 40 | |
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| 41 | """ |
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| 42 | |
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| 43 | def __init__(self): |
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| 44 | """ Initialization """ |
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| 45 | |
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| 46 | # Initialize BaseComponent first, then sphere |
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| 47 | BaseComponent.__init__(self) |
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| 48 | CHayterMSAStructure.__init__(self) |
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| 49 | |
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| 50 | ## Name of the model |
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| 51 | self.name = "HayterMSAStructure" |
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| 52 | ## Model description |
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[1ed3834] | 53 | self.description ="""To calculate the structure factor (the Fourier transform of the |
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| 54 | pair correlation function g(r)) for a system of |
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| 55 | charged, spheroidal objects in a dielectric |
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| 56 | medium. |
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| 57 | When combined with an appropriate form |
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| 58 | factor, this allows for inclusion of |
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| 59 | the interparticle interference effects |
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| 60 | due to screened coulomb repulsion between |
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| 61 | charged particles. |
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| 62 | (Note: charge > 0 required.) |
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[1bbf2ac] | 63 | |
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| 64 | Ref: JP Hansen and JB Hayter, Molecular |
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| 65 | Physics 46, 651-656 (1982). |
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| 66 | """ |
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| 67 | |
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[fe9c19b4] | 68 | ## Parameter details [units, min, max] |
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[1bbf2ac] | 69 | self.details = {} |
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[5eb9154] | 70 | self.details['effect_radius'] = ['[A]', None, None] |
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[1bbf2ac] | 71 | self.details['charge'] = ['', None, None] |
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| 72 | self.details['volfraction'] = ['', None, None] |
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[0824909] | 73 | self.details['temperature'] = ['[K]', None, None] |
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| 74 | self.details['saltconc'] = ['[M]', None, None] |
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[1bbf2ac] | 75 | self.details['dielectconst'] = ['', None, None] |
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| 76 | |
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[fe9c19b4] | 77 | ## fittable parameters |
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[5eb9154] | 78 | self.fixed=['effect_radius.width'] |
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[0824909] | 79 | |
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| 80 | ## parameters with orientation |
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| 81 | self.orientation_params =[] |
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[1bbf2ac] | 82 | |
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| 83 | def clone(self): |
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| 84 | """ Return a identical copy of self """ |
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| 85 | return self._clone(HayterMSAStructure()) |
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[fe9c19b4] | 86 | |
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| 87 | def __getstate__(self): |
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| 88 | """ return object state for pickling and copying """ |
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| 89 | model_state = {'params': self.params, 'dispersion': self.dispersion, 'log': self.log} |
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| 90 | |
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| 91 | return self.__dict__, model_state |
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| 92 | |
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| 93 | def __setstate__(self, state): |
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| 94 | """ create object from pickled state """ |
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| 95 | |
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| 96 | self.__dict__, model_state = state |
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| 97 | self.params = model_state['params'] |
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| 98 | self.dispersion = model_state['dispersion'] |
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| 99 | self.log = model_state['log'] |
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| 100 | |
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[1bbf2ac] | 101 | |
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| 102 | def run(self, x = 0.0): |
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| 103 | """ Evaluate the model |
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| 104 | @param x: input q, or [q,phi] |
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| 105 | @return: scattering function P(q) |
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| 106 | """ |
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| 107 | |
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| 108 | return CHayterMSAStructure.run(self, x) |
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| 109 | |
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| 110 | def runXY(self, x = 0.0): |
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| 111 | """ Evaluate the model in cartesian coordinates |
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| 112 | @param x: input q, or [qx, qy] |
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| 113 | @return: scattering function P(q) |
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| 114 | """ |
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| 115 | |
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| 116 | return CHayterMSAStructure.runXY(self, x) |
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| 117 | |
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[f9a1279] | 118 | def evalDistribution(self, x = []): |
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[9bd69098] | 119 | """ Evaluate the model in cartesian coordinates |
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| 120 | @param x: input q[], or [qx[], qy[]] |
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| 121 | @return: scattering function P(q[]) |
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| 122 | """ |
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[f9a1279] | 123 | return CHayterMSAStructure.evalDistribution(self, x) |
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[9bd69098] | 124 | |
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[5eb9154] | 125 | def calculate_ER(self): |
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| 126 | """ Calculate the effective radius for P(q)*S(q) |
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| 127 | @return: the value of the effective radius |
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| 128 | """ |
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| 129 | return CHayterMSAStructure.calculate_ER(self) |
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| 130 | |
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[1bbf2ac] | 131 | def set_dispersion(self, parameter, dispersion): |
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| 132 | """ |
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| 133 | Set the dispersion object for a model parameter |
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| 134 | @param parameter: name of the parameter [string] |
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| 135 | @dispersion: dispersion object of type DispersionModel |
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| 136 | """ |
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| 137 | return CHayterMSAStructure.set_dispersion(self, parameter, dispersion.cdisp) |
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| 138 | |
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| 139 | |
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| 140 | # End of file |
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