[1bbf2ac] | 1 | #!/usr/bin/env python |
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| 2 | |
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[79ac6f8] | 3 | ############################################################################## |
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| 4 | # This software was developed by the University of Tennessee as part of the |
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| 5 | # Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
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| 6 | # project funded by the US National Science Foundation. |
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| 7 | # |
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| 8 | # If you use DANSE applications to do scientific research that leads to |
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| 9 | # publication, we ask that you acknowledge the use of the software with the |
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| 10 | # following sentence: |
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| 11 | # |
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| 12 | # "This work benefited from DANSE software developed under NSF award DMR-0520547." |
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| 13 | # |
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| 14 | # copyright 2008, University of Tennessee |
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| 15 | ############################################################################## |
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[1bbf2ac] | 16 | |
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| 17 | |
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[79ac6f8] | 18 | """ |
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| 19 | Provide functionality for a C extension model |
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[1bbf2ac] | 20 | |
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[79ac6f8] | 21 | :WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
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| 22 | DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\Hardsphere.h |
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| 23 | AND RE-RUN THE GENERATOR SCRIPT |
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[1bbf2ac] | 24 | |
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| 25 | """ |
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| 26 | |
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| 27 | from sans.models.BaseComponent import BaseComponent |
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| 28 | from sans_extension.c_models import CHardsphereStructure |
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| 29 | import copy |
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[96656e3] | 30 | |
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| 31 | def create_HardsphereStructure(): |
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| 32 | obj = HardsphereStructure() |
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| 33 | #CHardsphereStructure.__init__(obj) is called by HardsphereStructure constructor |
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| 34 | return obj |
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| 35 | |
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[1bbf2ac] | 36 | class HardsphereStructure(CHardsphereStructure, BaseComponent): |
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[79ac6f8] | 37 | """ |
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| 38 | Class that evaluates a HardsphereStructure model. |
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| 39 | This file was auto-generated from ..\c_extensions\Hardsphere.h. |
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| 40 | Refer to that file and the structure it contains |
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| 41 | for details of the model. |
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| 42 | List of default parameters: |
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[5eb9154] | 43 | effect_radius = 50.0 [A] |
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[1bbf2ac] | 44 | volfraction = 0.2 |
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| 45 | |
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| 46 | """ |
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| 47 | |
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| 48 | def __init__(self): |
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| 49 | """ Initialization """ |
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| 50 | |
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| 51 | # Initialize BaseComponent first, then sphere |
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| 52 | BaseComponent.__init__(self) |
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[96656e3] | 53 | #apply(CHardsphereStructure.__init__, (self,)) |
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[1bbf2ac] | 54 | CHardsphereStructure.__init__(self) |
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| 55 | |
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| 56 | ## Name of the model |
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| 57 | self.name = "HardsphereStructure" |
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| 58 | ## Model description |
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[1ed3834] | 59 | self.description ="""Structure factor for interacting particles: . |
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[1bbf2ac] | 60 | |
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| 61 | The interparticle potential is |
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| 62 | |
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| 63 | U(r)= inf , r < 2R |
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| 64 | = 0 , r >= 2R |
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| 65 | |
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[5eb9154] | 66 | R: effective radius of the Hardsphere particle |
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[1bbf2ac] | 67 | V:The volume fraction |
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| 68 | |
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[1ed3834] | 69 | Ref: Percus., J. K.,etc., J. Phy. |
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| 70 | Rev. 1958, 110, 1.""" |
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[1bbf2ac] | 71 | |
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[fe9c19b4] | 72 | ## Parameter details [units, min, max] |
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[1bbf2ac] | 73 | self.details = {} |
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[5eb9154] | 74 | self.details['effect_radius'] = ['[A]', None, None] |
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[1bbf2ac] | 75 | self.details['volfraction'] = ['', None, None] |
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| 76 | |
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[fe9c19b4] | 77 | ## fittable parameters |
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[5eb9154] | 78 | self.fixed=['effect_radius.width'] |
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[0824909] | 79 | |
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[35aface] | 80 | ## non-fittable parameters |
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[96656e3] | 81 | self.non_fittable = [] |
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[35aface] | 82 | |
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[0824909] | 83 | ## parameters with orientation |
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[96656e3] | 84 | self.orientation_params = [] |
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[1bbf2ac] | 85 | |
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[96656e3] | 86 | def __reduce_ex__(self, proto): |
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[79ac6f8] | 87 | """ |
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[96656e3] | 88 | Overwrite the __reduce_ex__ of PyTypeObject *type call in the init of |
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| 89 | c model. |
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[79ac6f8] | 90 | """ |
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[96656e3] | 91 | return (create_HardsphereStructure,tuple()) |
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[fe9c19b4] | 92 | |
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[96656e3] | 93 | def clone(self): |
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| 94 | """ Return a identical copy of self """ |
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| 95 | return self._clone(HardsphereStructure()) |
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[fe9c19b4] | 96 | |
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[1bbf2ac] | 97 | |
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[79ac6f8] | 98 | def run(self, x=0.0): |
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| 99 | """ |
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| 100 | Evaluate the model |
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| 101 | |
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| 102 | :param x: input q, or [q,phi] |
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| 103 | |
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| 104 | :return: scattering function P(q) |
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| 105 | |
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[1bbf2ac] | 106 | """ |
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| 107 | |
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| 108 | return CHardsphereStructure.run(self, x) |
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| 109 | |
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[79ac6f8] | 110 | def runXY(self, x=0.0): |
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| 111 | """ |
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| 112 | Evaluate the model in cartesian coordinates |
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| 113 | |
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| 114 | :param x: input q, or [qx, qy] |
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| 115 | |
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| 116 | :return: scattering function P(q) |
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| 117 | |
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[1bbf2ac] | 118 | """ |
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| 119 | |
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| 120 | return CHardsphereStructure.runXY(self, x) |
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| 121 | |
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[79ac6f8] | 122 | def evalDistribution(self, x=[]): |
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| 123 | """ |
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| 124 | Evaluate the model in cartesian coordinates |
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| 125 | |
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| 126 | :param x: input q[], or [qx[], qy[]] |
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| 127 | |
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| 128 | :return: scattering function P(q[]) |
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| 129 | |
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[9bd69098] | 130 | """ |
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[f9a1279] | 131 | return CHardsphereStructure.evalDistribution(self, x) |
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[9bd69098] | 132 | |
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[5eb9154] | 133 | def calculate_ER(self): |
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[79ac6f8] | 134 | """ |
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| 135 | Calculate the effective radius for P(q)*S(q) |
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| 136 | |
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| 137 | :return: the value of the effective radius |
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| 138 | |
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[5eb9154] | 139 | """ |
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| 140 | return CHardsphereStructure.calculate_ER(self) |
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| 141 | |
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[1bbf2ac] | 142 | def set_dispersion(self, parameter, dispersion): |
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| 143 | """ |
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[79ac6f8] | 144 | Set the dispersion object for a model parameter |
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| 145 | |
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| 146 | :param parameter: name of the parameter [string] |
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| 147 | :param dispersion: dispersion object of type DispersionModel |
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| 148 | |
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[1bbf2ac] | 149 | """ |
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| 150 | return CHardsphereStructure.set_dispersion(self, parameter, dispersion.cdisp) |
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| 151 | |
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| 152 | |
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| 153 | # End of file |
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