[ec658c85] | 1 | #!/usr/bin/env python |
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| 2 | |
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[79ac6f8] | 3 | ############################################################################## |
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| 4 | # This software was developed by the University of Tennessee as part of the |
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| 5 | # Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
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| 6 | # project funded by the US National Science Foundation. |
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| 7 | # |
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| 8 | # If you use DANSE applications to do scientific research that leads to |
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| 9 | # publication, we ask that you acknowledge the use of the software with the |
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| 10 | # following sentence: |
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| 11 | # |
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| 12 | # "This work benefited from DANSE software developed under NSF award DMR-0520547." |
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| 13 | # |
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| 14 | # copyright 2008, University of Tennessee |
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| 15 | ############################################################################## |
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[ec658c85] | 16 | |
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| 17 | |
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[79ac6f8] | 18 | """ |
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| 19 | Provide functionality for a C extension model |
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[ec658c85] | 20 | |
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[79ac6f8] | 21 | :WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
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| 22 | DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\flexcyl_ellipX.h |
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| 23 | AND RE-RUN THE GENERATOR SCRIPT |
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[ec658c85] | 24 | |
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| 25 | """ |
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| 26 | |
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| 27 | from sans.models.BaseComponent import BaseComponent |
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| 28 | from sans_extension.c_models import CFlexCylEllipXModel |
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| 29 | import copy |
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[96656e3] | 30 | |
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| 31 | def create_FlexCylEllipXModel(): |
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| 32 | obj = FlexCylEllipXModel() |
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| 33 | #CFlexCylEllipXModel.__init__(obj) is called by FlexCylEllipXModel constructor |
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| 34 | return obj |
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| 35 | |
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[ec658c85] | 36 | class FlexCylEllipXModel(CFlexCylEllipXModel, BaseComponent): |
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[79ac6f8] | 37 | """ |
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| 38 | Class that evaluates a FlexCylEllipXModel model. |
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| 39 | This file was auto-generated from ..\c_extensions\flexcyl_ellipX.h. |
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| 40 | Refer to that file and the structure it contains |
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| 41 | for details of the model. |
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| 42 | List of default parameters: |
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[ec658c85] | 43 | scale = 1.0 |
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| 44 | length = 1000.0 [A] |
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| 45 | kuhn_length = 100.0 [A] |
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| 46 | radius = 20.0 [A] |
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| 47 | axis_ratio = 1.5 |
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| 48 | sldCyl = 1e-006 [1/A^(2)] |
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| 49 | sldSolv = 6.3e-006 [1/A^(2)] |
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| 50 | background = 0.0001 [1/cm] |
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| 51 | |
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| 52 | """ |
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| 53 | |
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| 54 | def __init__(self): |
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| 55 | """ Initialization """ |
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| 56 | |
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| 57 | # Initialize BaseComponent first, then sphere |
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| 58 | BaseComponent.__init__(self) |
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[96656e3] | 59 | #apply(CFlexCylEllipXModel.__init__, (self,)) |
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[ec658c85] | 60 | CFlexCylEllipXModel.__init__(self) |
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| 61 | |
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| 62 | ## Name of the model |
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| 63 | self.name = "FlexCylEllipXModel" |
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| 64 | ## Model description |
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| 65 | self.description =""" Note : scale and contrast=sldCyl-sldSolv are both multiplicative factors in the |
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| 66 | model and are perfectly correlated. One or |
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| 67 | both of these parameters must be held fixed |
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| 68 | during model fitting.""" |
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| 69 | |
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| 70 | ## Parameter details [units, min, max] |
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| 71 | self.details = {} |
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| 72 | self.details['scale'] = ['', None, None] |
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| 73 | self.details['length'] = ['[A]', None, None] |
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| 74 | self.details['kuhn_length'] = ['[A]', None, None] |
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| 75 | self.details['radius'] = ['[A]', None, None] |
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| 76 | self.details['axis_ratio'] = ['', None, None] |
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| 77 | self.details['sldCyl'] = ['[1/A^(2)]', None, None] |
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| 78 | self.details['sldSolv'] = ['[1/A^(2)]', None, None] |
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| 79 | self.details['background'] = ['[1/cm]', None, None] |
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| 80 | |
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| 81 | ## fittable parameters |
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| 82 | self.fixed=['length.width', 'kuhn_length.width', 'radius.width', 'axis_ratio.width'] |
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| 83 | |
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[35aface] | 84 | ## non-fittable parameters |
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[96656e3] | 85 | self.non_fittable = [] |
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[35aface] | 86 | |
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[ec658c85] | 87 | ## parameters with orientation |
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[96656e3] | 88 | self.orientation_params = [] |
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[c7a7e1b] | 89 | |
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| 90 | def __setstate__(self, state): |
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| 91 | """ |
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| 92 | restore the state of a model from pickle |
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| 93 | """ |
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| 94 | self.__dict__, self.params, self.dispersion = state |
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| 95 | |
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[96656e3] | 96 | def __reduce_ex__(self, proto): |
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[79ac6f8] | 97 | """ |
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[96656e3] | 98 | Overwrite the __reduce_ex__ of PyTypeObject *type call in the init of |
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| 99 | c model. |
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[79ac6f8] | 100 | """ |
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[c7a7e1b] | 101 | state = (self.__dict__, self.params, self.dispersion) |
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| 102 | return (create_FlexCylEllipXModel,tuple(), state, None, None) |
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[ec658c85] | 103 | |
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[96656e3] | 104 | def clone(self): |
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| 105 | """ Return a identical copy of self """ |
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| 106 | return self._clone(FlexCylEllipXModel()) |
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[ec658c85] | 107 | |
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| 108 | |
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[79ac6f8] | 109 | def run(self, x=0.0): |
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| 110 | """ |
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| 111 | Evaluate the model |
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| 112 | |
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| 113 | :param x: input q, or [q,phi] |
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| 114 | |
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| 115 | :return: scattering function P(q) |
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| 116 | |
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[ec658c85] | 117 | """ |
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| 118 | |
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| 119 | return CFlexCylEllipXModel.run(self, x) |
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| 120 | |
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[79ac6f8] | 121 | def runXY(self, x=0.0): |
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| 122 | """ |
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| 123 | Evaluate the model in cartesian coordinates |
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| 124 | |
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| 125 | :param x: input q, or [qx, qy] |
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| 126 | |
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| 127 | :return: scattering function P(q) |
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| 128 | |
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[ec658c85] | 129 | """ |
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| 130 | |
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| 131 | return CFlexCylEllipXModel.runXY(self, x) |
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| 132 | |
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[79ac6f8] | 133 | def evalDistribution(self, x=[]): |
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| 134 | """ |
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| 135 | Evaluate the model in cartesian coordinates |
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| 136 | |
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| 137 | :param x: input q[], or [qx[], qy[]] |
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| 138 | |
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| 139 | :return: scattering function P(q[]) |
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| 140 | |
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[ec658c85] | 141 | """ |
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| 142 | return CFlexCylEllipXModel.evalDistribution(self, x) |
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| 143 | |
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| 144 | def calculate_ER(self): |
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[79ac6f8] | 145 | """ |
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| 146 | Calculate the effective radius for P(q)*S(q) |
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| 147 | |
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| 148 | :return: the value of the effective radius |
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| 149 | |
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[ec658c85] | 150 | """ |
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| 151 | return CFlexCylEllipXModel.calculate_ER(self) |
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| 152 | |
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| 153 | def set_dispersion(self, parameter, dispersion): |
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| 154 | """ |
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[79ac6f8] | 155 | Set the dispersion object for a model parameter |
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| 156 | |
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| 157 | :param parameter: name of the parameter [string] |
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| 158 | :param dispersion: dispersion object of type DispersionModel |
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| 159 | |
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[ec658c85] | 160 | """ |
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| 161 | return CFlexCylEllipXModel.set_dispersion(self, parameter, dispersion.cdisp) |
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| 162 | |
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| 163 | |
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| 164 | # End of file |
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