source: sasview/sansmodels/src/sans/models/EllipticalCylinderModel.py @ ce07fa8

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Last change on this file since ce07fa8 was f10063e, checked in by Jae Cho <jhjcho@…>, 15 years ago

Updated the definition of SLD params according to new libigor functions

  • Property mode set to 100644
File size: 5.3 KB
RevLine 
[ae3ce4e]1#!/usr/bin/env python
[95986b5]2"""
3        This software was developed by the University of Tennessee as part of the
4        Distributed Data Analysis of Neutron Scattering Experiments (DANSE)
5        project funded by the US National Science Foundation.
6
7        If you use DANSE applications to do scientific research that leads to
8        publication, we ask that you acknowledge the use of the software with the
9        following sentence:
10
11        "This work benefited from DANSE software developed under NSF award DMR-0520547."
12
13        copyright 2008, University of Tennessee
14"""
15
[ae3ce4e]16""" Provide functionality for a C extension model
17
18        WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY
[836fe6e]19                 DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\elliptical_cylinder.h
[ae3ce4e]20                 AND RE-RUN THE GENERATOR SCRIPT
21
22"""
23
24from sans.models.BaseComponent import BaseComponent
25from sans_extension.c_models import CEllipticalCylinderModel
26import copy   
27   
28class EllipticalCylinderModel(CEllipticalCylinderModel, BaseComponent):
29    """ Class that evaluates a EllipticalCylinderModel model.
[fe9c19b4]30        This file was auto-generated from ..\c_extensions\elliptical_cylinder.h.
31        Refer to that file and the structure it contains
32        for details of the model.
33        List of default parameters:
[ae3ce4e]34         scale           = 1.0
[1ed3834]35         r_minor         = 20.0 [A]
[0824909]36         r_ratio         = 1.5
[1ed3834]37         length          = 400.0 [A]
[f10063e]38         sldCyl          = 4e-006 [1/A^(2)]
39         sldSolv         = 1e-006 [1/A^(2)]
[0824909]40         background      = 0.0 [1/cm]
41         cyl_theta       = 1.57 [rad]
42         cyl_phi         = 0.0 [rad]
43         cyl_psi         = 0.0 [rad]
[ae3ce4e]44
45    """
46       
47    def __init__(self):
48        """ Initialization """
49       
50        # Initialize BaseComponent first, then sphere
51        BaseComponent.__init__(self)
52        CEllipticalCylinderModel.__init__(self)
53       
54        ## Name of the model
55        self.name = "EllipticalCylinderModel"
[836fe6e]56        ## Model description
[7ad9887]57        self.description =""" Model parameters: r_minor = the radius of minor axis of the cross section
58                r_ratio = the ratio of (r_major /r_minor >= 1)
59                length = the length of the cylinder
[f10063e]60                sldCyl = SLD of the cylinder
61                sldSolv = SLD of solvent -
[7ad9887]62                background = incoherent background"""
[836fe6e]63       
[fe9c19b4]64        ## Parameter details [units, min, max]
[ae3ce4e]65        self.details = {}
66        self.details['scale'] = ['', None, None]
[1ed3834]67        self.details['r_minor'] = ['[A]', None, None]
[0824909]68        self.details['r_ratio'] = ['', None, None]
[1ed3834]69        self.details['length'] = ['[A]', None, None]
[f10063e]70        self.details['sldCyl'] = ['[1/A^(2)]', None, None]
71        self.details['sldSolv'] = ['[1/A^(2)]', None, None]
[0824909]72        self.details['background'] = ['[1/cm]', None, None]
73        self.details['cyl_theta'] = ['[rad]', None, None]
74        self.details['cyl_phi'] = ['[rad]', None, None]
75        self.details['cyl_psi'] = ['[rad]', None, None]
[836fe6e]76
[fe9c19b4]77        ## fittable parameters
[975ec8e]78        self.fixed=['cyl_phi.width', 'cyl_theta.width', 'cyl_psi.width', 'length.width', 'r_minor.width', 'r_ratio.width']
[25a608f5]79       
80        ## parameters with orientation
81        self.orientation_params =['cyl_phi', 'cyl_theta', 'cyl_psi', 'cyl_phi.width', 'cyl_theta.width', 'cyl_psi.width']
[ae3ce4e]82   
83    def clone(self):
84        """ Return a identical copy of self """
[95986b5]85        return self._clone(EllipticalCylinderModel())   
[fe9c19b4]86       
87    def __getstate__(self):
88        """ return object state for pickling and copying """
89        model_state = {'params': self.params, 'dispersion': self.dispersion, 'log': self.log}
90       
91        return self.__dict__, model_state
92       
93    def __setstate__(self, state):
94        """ create object from pickled state """
95       
96        self.__dict__, model_state = state
97        self.params = model_state['params']
98        self.dispersion = model_state['dispersion']
99        self.log = model_state['log']
100       
[ae3ce4e]101   
102    def run(self, x = 0.0):
103        """ Evaluate the model
104            @param x: input q, or [q,phi]
105            @return: scattering function P(q)
106        """
107       
108        return CEllipticalCylinderModel.run(self, x)
109   
110    def runXY(self, x = 0.0):
111        """ Evaluate the model in cartesian coordinates
112            @param x: input q, or [qx, qy]
113            @return: scattering function P(q)
114        """
115       
116        return CEllipticalCylinderModel.runXY(self, x)
[95986b5]117       
[f9a1279]118    def evalDistribution(self, x = []):
[9bd69098]119        """ Evaluate the model in cartesian coordinates
120            @param x: input q[], or [qx[], qy[]]
121            @return: scattering function P(q[])
122        """
[f9a1279]123        return CEllipticalCylinderModel.evalDistribution(self, x)
[9bd69098]124       
[5eb9154]125    def calculate_ER(self):
126        """ Calculate the effective radius for P(q)*S(q)
127            @return: the value of the effective radius
128        """       
129        return CEllipticalCylinderModel.calculate_ER(self)
130       
[95986b5]131    def set_dispersion(self, parameter, dispersion):
132        """
133            Set the dispersion object for a model parameter
134            @param parameter: name of the parameter [string]
135            @dispersion: dispersion object of type DispersionModel
136        """
137        return CEllipticalCylinderModel.set_dispersion(self, parameter, dispersion.cdisp)
138       
[ae3ce4e]139   
140# End of file
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