[ae3ce4e] | 1 | #!/usr/bin/env python |
---|
[95986b5] | 2 | """ |
---|
| 3 | This software was developed by the University of Tennessee as part of the |
---|
| 4 | Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
---|
| 5 | project funded by the US National Science Foundation. |
---|
| 6 | |
---|
| 7 | If you use DANSE applications to do scientific research that leads to |
---|
| 8 | publication, we ask that you acknowledge the use of the software with the |
---|
| 9 | following sentence: |
---|
| 10 | |
---|
| 11 | "This work benefited from DANSE software developed under NSF award DMR-0520547." |
---|
| 12 | |
---|
| 13 | copyright 2008, University of Tennessee |
---|
| 14 | """ |
---|
| 15 | |
---|
[ae3ce4e] | 16 | """ Provide functionality for a C extension model |
---|
| 17 | |
---|
| 18 | WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
---|
[836fe6e] | 19 | DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\elliptical_cylinder.h |
---|
[ae3ce4e] | 20 | AND RE-RUN THE GENERATOR SCRIPT |
---|
| 21 | |
---|
| 22 | """ |
---|
| 23 | |
---|
| 24 | from sans.models.BaseComponent import BaseComponent |
---|
| 25 | from sans_extension.c_models import CEllipticalCylinderModel |
---|
| 26 | import copy |
---|
| 27 | |
---|
| 28 | class EllipticalCylinderModel(CEllipticalCylinderModel, BaseComponent): |
---|
| 29 | """ Class that evaluates a EllipticalCylinderModel model. |
---|
[836fe6e] | 30 | This file was auto-generated from ..\c_extensions\elliptical_cylinder.h. |
---|
[ae3ce4e] | 31 | Refer to that file and the structure it contains |
---|
| 32 | for details of the model. |
---|
| 33 | List of default parameters: |
---|
| 34 | scale = 1.0 |
---|
[1ed3834] | 35 | r_minor = 20.0 [A] |
---|
[0824909] | 36 | r_ratio = 1.5 |
---|
[1ed3834] | 37 | length = 400.0 [A] |
---|
[27972c1d] | 38 | contrast = 3e-006 [1/A^(2)] |
---|
[0824909] | 39 | background = 0.0 [1/cm] |
---|
| 40 | cyl_theta = 1.57 [rad] |
---|
| 41 | cyl_phi = 0.0 [rad] |
---|
| 42 | cyl_psi = 0.0 [rad] |
---|
[ae3ce4e] | 43 | |
---|
| 44 | """ |
---|
| 45 | |
---|
| 46 | def __init__(self): |
---|
| 47 | """ Initialization """ |
---|
| 48 | |
---|
| 49 | # Initialize BaseComponent first, then sphere |
---|
| 50 | BaseComponent.__init__(self) |
---|
| 51 | CEllipticalCylinderModel.__init__(self) |
---|
| 52 | |
---|
| 53 | ## Name of the model |
---|
| 54 | self.name = "EllipticalCylinderModel" |
---|
[836fe6e] | 55 | ## Model description |
---|
[7ad9887] | 56 | self.description =""" Model parameters: r_minor = the radius of minor axis of the cross section |
---|
| 57 | r_ratio = the ratio of (r_major /r_minor >= 1) |
---|
| 58 | length = the length of the cylinder |
---|
| 59 | contrast = SLD of solvent - SLD of the cylinder |
---|
| 60 | background = incoherent background""" |
---|
[836fe6e] | 61 | |
---|
[ae3ce4e] | 62 | ## Parameter details [units, min, max] |
---|
| 63 | self.details = {} |
---|
| 64 | self.details['scale'] = ['', None, None] |
---|
[1ed3834] | 65 | self.details['r_minor'] = ['[A]', None, None] |
---|
[0824909] | 66 | self.details['r_ratio'] = ['', None, None] |
---|
[1ed3834] | 67 | self.details['length'] = ['[A]', None, None] |
---|
[27972c1d] | 68 | self.details['contrast'] = ['[1/A^(2)]', None, None] |
---|
[0824909] | 69 | self.details['background'] = ['[1/cm]', None, None] |
---|
| 70 | self.details['cyl_theta'] = ['[rad]', None, None] |
---|
| 71 | self.details['cyl_phi'] = ['[rad]', None, None] |
---|
| 72 | self.details['cyl_psi'] = ['[rad]', None, None] |
---|
[836fe6e] | 73 | |
---|
| 74 | ## fittable parameters |
---|
[975ec8e] | 75 | self.fixed=['cyl_phi.width', 'cyl_theta.width', 'cyl_psi.width', 'length.width', 'r_minor.width', 'r_ratio.width'] |
---|
[25a608f5] | 76 | |
---|
| 77 | ## parameters with orientation |
---|
| 78 | self.orientation_params =['cyl_phi', 'cyl_theta', 'cyl_psi', 'cyl_phi.width', 'cyl_theta.width', 'cyl_psi.width'] |
---|
[ae3ce4e] | 79 | |
---|
| 80 | def clone(self): |
---|
| 81 | """ Return a identical copy of self """ |
---|
[95986b5] | 82 | return self._clone(EllipticalCylinderModel()) |
---|
[ae3ce4e] | 83 | |
---|
| 84 | def run(self, x = 0.0): |
---|
| 85 | """ Evaluate the model |
---|
| 86 | @param x: input q, or [q,phi] |
---|
| 87 | @return: scattering function P(q) |
---|
| 88 | """ |
---|
| 89 | |
---|
| 90 | return CEllipticalCylinderModel.run(self, x) |
---|
| 91 | |
---|
| 92 | def runXY(self, x = 0.0): |
---|
| 93 | """ Evaluate the model in cartesian coordinates |
---|
| 94 | @param x: input q, or [qx, qy] |
---|
| 95 | @return: scattering function P(q) |
---|
| 96 | """ |
---|
| 97 | |
---|
| 98 | return CEllipticalCylinderModel.runXY(self, x) |
---|
[95986b5] | 99 | |
---|
[9bd69098] | 100 | def evalDistribition(self, x = []): |
---|
| 101 | """ Evaluate the model in cartesian coordinates |
---|
| 102 | @param x: input q[], or [qx[], qy[]] |
---|
| 103 | @return: scattering function P(q[]) |
---|
| 104 | """ |
---|
| 105 | return CEllipticalCylinderModel.evalDistribition(self, x) |
---|
| 106 | |
---|
[5eb9154] | 107 | def calculate_ER(self): |
---|
| 108 | """ Calculate the effective radius for P(q)*S(q) |
---|
| 109 | @return: the value of the effective radius |
---|
| 110 | """ |
---|
| 111 | return CEllipticalCylinderModel.calculate_ER(self) |
---|
| 112 | |
---|
[95986b5] | 113 | def set_dispersion(self, parameter, dispersion): |
---|
| 114 | """ |
---|
| 115 | Set the dispersion object for a model parameter |
---|
| 116 | @param parameter: name of the parameter [string] |
---|
| 117 | @dispersion: dispersion object of type DispersionModel |
---|
| 118 | """ |
---|
| 119 | return CEllipticalCylinderModel.set_dispersion(self, parameter, dispersion.cdisp) |
---|
| 120 | |
---|
[ae3ce4e] | 121 | |
---|
| 122 | # End of file |
---|