[40945a3] | 1 | #!/usr/bin/env python |
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| 2 | |
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[79ac6f8] | 3 | ############################################################################## |
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| 4 | # This software was developed by the University of Tennessee as part of the |
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| 5 | # Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
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| 6 | # project funded by the US National Science Foundation. |
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| 7 | # |
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| 8 | # If you use DANSE applications to do scientific research that leads to |
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| 9 | # publication, we ask that you acknowledge the use of the software with the |
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| 10 | # following sentence: |
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| 11 | # |
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| 12 | # "This work benefited from DANSE software developed under NSF award DMR-0520547." |
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| 13 | # |
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| 14 | # copyright 2008, University of Tennessee |
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| 15 | ############################################################################## |
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[40945a3] | 16 | |
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| 17 | |
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[79ac6f8] | 18 | """ |
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| 19 | Provide functionality for a C extension model |
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[40945a3] | 20 | |
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[79ac6f8] | 21 | :WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
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| 22 | DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\DiamEllip.h |
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| 23 | AND RE-RUN THE GENERATOR SCRIPT |
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[40945a3] | 24 | |
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| 25 | """ |
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| 26 | |
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| 27 | from sans.models.BaseComponent import BaseComponent |
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| 28 | from sans_extension.c_models import CDiamEllipFunc |
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| 29 | import copy |
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| 30 | |
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| 31 | class DiamEllipFunc(CDiamEllipFunc, BaseComponent): |
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[79ac6f8] | 32 | """ |
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| 33 | Class that evaluates a DiamEllipFunc model. |
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| 34 | This file was auto-generated from ..\c_extensions\DiamEllip.h. |
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| 35 | Refer to that file and the structure it contains |
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| 36 | for details of the model. |
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| 37 | List of default parameters: |
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[40945a3] | 38 | radius_a = 20.0 A |
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| 39 | radius_b = 400.0 A |
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| 40 | |
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| 41 | """ |
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| 42 | |
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| 43 | def __init__(self): |
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| 44 | """ Initialization """ |
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| 45 | |
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| 46 | # Initialize BaseComponent first, then sphere |
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| 47 | BaseComponent.__init__(self) |
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| 48 | CDiamEllipFunc.__init__(self) |
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| 49 | |
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| 50 | ## Name of the model |
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| 51 | self.name = "DiamEllipFunc" |
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| 52 | ## Model description |
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| 53 | self.description ="""To calculate the 2nd virial coefficient for |
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| 54 | the non-spherical object, then find the |
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| 55 | radius of sphere that has this value of |
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| 56 | virial coefficient: |
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| 57 | radius_a = polar radius, |
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| 58 | radius_b = equatorial radius; |
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| 59 | radius_a > radius_b: Prolate spheroid, |
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| 60 | radius_a < radius_b: Oblate spheroid.""" |
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| 61 | |
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[fe9c19b4] | 62 | ## Parameter details [units, min, max] |
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[40945a3] | 63 | self.details = {} |
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| 64 | self.details['radius_a'] = ['A', None, None] |
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| 65 | self.details['radius_b'] = ['A', None, None] |
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| 66 | |
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[fe9c19b4] | 67 | ## fittable parameters |
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[40945a3] | 68 | self.fixed=['radius_a.width', 'radius_b.width'] |
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[870f131] | 69 | |
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| 70 | ## parameters with orientation |
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| 71 | self.orientation_params =[] |
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[40945a3] | 72 | |
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| 73 | def clone(self): |
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| 74 | """ Return a identical copy of self """ |
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| 75 | return self._clone(DiamEllipFunc()) |
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[fe9c19b4] | 76 | |
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| 77 | def __getstate__(self): |
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[79ac6f8] | 78 | """ |
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| 79 | return object state for pickling and copying |
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| 80 | """ |
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[fe9c19b4] | 81 | model_state = {'params': self.params, 'dispersion': self.dispersion, 'log': self.log} |
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| 82 | |
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| 83 | return self.__dict__, model_state |
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| 84 | |
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| 85 | def __setstate__(self, state): |
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[79ac6f8] | 86 | """ |
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| 87 | create object from pickled state |
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| 88 | |
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| 89 | :param state: the state of the current model |
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| 90 | |
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| 91 | """ |
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[fe9c19b4] | 92 | |
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| 93 | self.__dict__, model_state = state |
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| 94 | self.params = model_state['params'] |
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| 95 | self.dispersion = model_state['dispersion'] |
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| 96 | self.log = model_state['log'] |
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| 97 | |
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[40945a3] | 98 | |
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[79ac6f8] | 99 | def run(self, x=0.0): |
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| 100 | """ |
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| 101 | Evaluate the model |
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| 102 | |
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| 103 | :param x: input q, or [q,phi] |
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| 104 | |
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| 105 | :return: scattering function P(q) |
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| 106 | |
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[40945a3] | 107 | """ |
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| 108 | |
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| 109 | return CDiamEllipFunc.run(self, x) |
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| 110 | |
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[79ac6f8] | 111 | def runXY(self, x=0.0): |
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| 112 | """ |
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| 113 | Evaluate the model in cartesian coordinates |
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| 114 | |
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| 115 | :param x: input q, or [qx, qy] |
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| 116 | |
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| 117 | :return: scattering function P(q) |
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| 118 | |
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[40945a3] | 119 | """ |
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| 120 | |
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| 121 | return CDiamEllipFunc.runXY(self, x) |
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| 122 | |
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[79ac6f8] | 123 | def evalDistribution(self, x=[]): |
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| 124 | """ |
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| 125 | Evaluate the model in cartesian coordinates |
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| 126 | |
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| 127 | :param x: input q[], or [qx[], qy[]] |
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| 128 | |
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| 129 | :return: scattering function P(q[]) |
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| 130 | |
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[870f131] | 131 | """ |
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[f9a1279] | 132 | return CDiamEllipFunc.evalDistribution(self, x) |
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[870f131] | 133 | |
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[5eb9154] | 134 | def calculate_ER(self): |
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[79ac6f8] | 135 | """ |
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| 136 | Calculate the effective radius for P(q)*S(q) |
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| 137 | |
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| 138 | :return: the value of the effective radius |
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| 139 | |
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[5eb9154] | 140 | """ |
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| 141 | return CDiamEllipFunc.calculate_ER(self) |
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| 142 | |
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[40945a3] | 143 | def set_dispersion(self, parameter, dispersion): |
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| 144 | """ |
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[79ac6f8] | 145 | Set the dispersion object for a model parameter |
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| 146 | |
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| 147 | :param parameter: name of the parameter [string] |
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| 148 | :param dispersion: dispersion object of type DispersionModel |
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| 149 | |
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[40945a3] | 150 | """ |
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| 151 | return CDiamEllipFunc.set_dispersion(self, parameter, dispersion.cdisp) |
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| 152 | |
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| 153 | |
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| 154 | # End of file |
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