[829eee9] | 1 | #!/usr/bin/env python |
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| 2 | """ |
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[3db3895] | 3 | Provide F(x) = 2( exp(-x) + x - 1 )/x**2 |
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| 4 | with x = (q*R_g)**2 |
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| 5 | |
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[829eee9] | 6 | Debye function as a BaseComponent model |
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| 7 | """ |
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| 8 | |
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| 9 | from sans.models.BaseComponent import BaseComponent |
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| 10 | import math |
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| 11 | |
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| 12 | class DebyeModel(BaseComponent): |
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| 13 | |
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| 14 | """ |
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| 15 | Class that evaluates a Debye model. |
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| 16 | |
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[3db3895] | 17 | F(x) = 2( exp(-x) + x - 1 )/x**2 |
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| 18 | with x = (q*R_g)**2 |
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[829eee9] | 19 | |
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| 20 | The model has three parameters: |
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| 21 | Rg = radius of gyration |
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| 22 | scale = scale factor |
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| 23 | bkd = Constant background |
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| 24 | """ |
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| 25 | |
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| 26 | def __init__(self): |
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| 27 | """ Initialization """ |
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| 28 | |
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| 29 | # Initialize BaseComponent first, then sphere |
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| 30 | BaseComponent.__init__(self) |
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| 31 | |
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| 32 | ## Name of the model |
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| 33 | self.name = "Debye" |
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[96672c0] | 34 | self.description=""" |
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| 35 | F(x) = 2( exp(-x) + x - 1 )/x**2 |
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| 36 | with x = (q*R_g)**2 |
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| 37 | The model has three parameters: |
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| 38 | Rg = radius of gyration |
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| 39 | scale = scale factor |
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| 40 | bkd = Constant background |
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| 41 | """ |
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[829eee9] | 42 | ## Define parameters |
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| 43 | self.params = {} |
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[3db3895] | 44 | self.params['rg'] = 50.0 |
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| 45 | self.params['scale'] = 1.0 |
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| 46 | self.params['background'] = 0.0 |
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[829eee9] | 47 | |
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| 48 | ## Parameter details [units, min, max] |
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| 49 | self.details = {} |
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[3db3895] | 50 | self.details['rg'] = ['', None, None] |
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| 51 | self.details['scale'] = ['', None, None] |
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| 52 | self.details['background'] = ['', None, None] |
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[988130c6] | 53 | #list of parameter that cannot be fitted |
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| 54 | self.fixed= [] |
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[829eee9] | 55 | def _debye(self, x): |
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| 56 | """ |
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| 57 | Evaluate F(x)= scale * D + bkd |
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| 58 | has 2 internal parameters : |
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[3db3895] | 59 | D = 2 * (exp(-y) + y - 1)/y**2 |
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[829eee9] | 60 | y = (x * Rg)^(2) |
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| 61 | """ |
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[3db3895] | 62 | # Note that a zero denominator value will raise |
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| 63 | # an exception |
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[f629e346] | 64 | y = (x * self.params['rg'])**2.0 |
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| 65 | D = 2.0*( math.exp(-y) + y -1.0 )/y**2.0 |
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[3db3895] | 66 | return self.params['scale']* D + self.params['background'] |
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[829eee9] | 67 | |
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| 68 | def run(self, x = 0.0): |
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| 69 | """ Evaluate the model |
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[3db3895] | 70 | @param x: input q-value (float or [float, float] as [r, theta]) |
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[829eee9] | 71 | @return: (debye value) |
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| 72 | """ |
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| 73 | if x.__class__.__name__ == 'list': |
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[a55fac1] | 74 | return self._debye(x[0]) |
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[829eee9] | 75 | elif x.__class__.__name__ == 'tuple': |
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| 76 | raise ValueError, "Tuples are not allowed as input to BaseComponent models" |
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| 77 | else: |
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| 78 | return self._debye(x) |
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| 79 | |
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| 80 | def runXY(self, x = 0.0): |
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| 81 | """ Evaluate the model |
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[3db3895] | 82 | @param x: input q-value (float or [float, float] as [qx, qy]) |
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[829eee9] | 83 | @return: debye value |
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| 84 | """ |
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| 85 | if x.__class__.__name__ == 'list': |
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[a55fac1] | 86 | q = math.sqrt(x[0]**2 + x[1]**2) |
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| 87 | return self._debye(q) |
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[829eee9] | 88 | elif x.__class__.__name__ == 'tuple': |
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| 89 | raise ValueError, "Tuples are not allowed as input to BaseComponent models" |
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| 90 | else: |
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| 91 | return self._debye(x) |
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