1 | #!/usr/bin/env python |
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2 | """ |
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3 | This software was developed by the University of Tennessee as part of the |
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4 | Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
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5 | project funded by the US National Science Foundation. |
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6 | |
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7 | If you use DANSE applications to do scientific research that leads to |
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8 | publication, we ask that you acknowledge the use of the software with the |
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9 | following sentence: |
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10 | |
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11 | "This work benefited from DANSE software developed under NSF award DMR-0520547." |
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12 | |
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13 | copyright 2008, University of Tennessee |
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14 | """ |
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15 | |
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16 | """ Provide functionality for a C extension model |
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17 | |
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18 | WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
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19 | DO NOT MODIFY THIS FILE, MODIFY ../c_extensions/cylinder.h |
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20 | AND RE-RUN THE GENERATOR SCRIPT |
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21 | |
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22 | """ |
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23 | |
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24 | from sans.models.BaseComponent import BaseComponent |
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25 | from sans_extension.c_models import CCylinderModel |
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26 | import copy |
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27 | |
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28 | class CylinderModel(CCylinderModel, BaseComponent): |
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29 | """ Class that evaluates a CylinderModel model. |
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30 | This file was auto-generated from ../c_extensions/cylinder.h. |
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31 | Refer to that file and the structure it contains |
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32 | for details of the model. |
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33 | List of default parameters: |
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34 | scale = 1.0 |
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35 | radius = 20.0 A |
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36 | length = 400.0 A |
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37 | contrast = 3e-006 A-2 |
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38 | background = 0.0 cm-1 |
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39 | cyl_theta = 1.0 rad |
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40 | cyl_phi = 1.0 rad |
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41 | |
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42 | """ |
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43 | |
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44 | def __init__(self): |
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45 | """ Initialization """ |
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46 | |
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47 | # Initialize BaseComponent first, then sphere |
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48 | BaseComponent.__init__(self) |
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49 | CCylinderModel.__init__(self) |
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50 | |
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51 | ## Name of the model |
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52 | self.name = "CylinderModel" |
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53 | self.description ="""P(q,alpha)= scale/V*f(q)^(2)+bkg |
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54 | f(q)= 2*(scatter_sld - solvent_sld)*V*sin(qLcos(alpha/2))/[qLcos(alpha/2)]* |
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55 | J1(qRsin(alpha/2))/[qRsin(alpha)] |
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56 | V: Volume of the cylinder |
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57 | R: Radius of the cylinder |
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58 | L: Length of the cylinder |
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59 | J1: The bessel function |
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60 | alpha: angle betweenthe axis of the cylinder and the q-vector |
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61 | for 1D:the ouput is P(q)=scale/V*integral from pi/2 to zero of f(q)^(2)* |
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62 | sin(alpha)*dalpha+ bkg""" |
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63 | ## Parameter details [units, min, max] |
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64 | self.details = {} |
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65 | self.details['scale'] = ['', None, None] |
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66 | self.details['radius'] = ['A', None, None] |
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67 | self.details['length'] = ['A', None, None] |
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68 | self.details['contrast'] = ['A-2', None, None] |
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69 | self.details['background'] = ['cm-1', None, None] |
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70 | self.details['cyl_theta'] = ['rad', None, None] |
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71 | self.details['cyl_phi'] = ['rad', None, None] |
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72 | # fixed parameters |
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73 | self.fixed = ['cyl_phi.npts','cyl_phi.nsigmas','cyl_theta.npts','cyl_theta.nsigmas', |
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74 | 'length.npts','length.nsigmas','radius.npts','radius.nsigmas'] |
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75 | |
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76 | def clone(self): |
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77 | """ Return a identical copy of self """ |
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78 | return self._clone(CylinderModel()) |
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79 | |
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80 | def run(self, x = 0.0): |
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81 | """ Evaluate the model |
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82 | @param x: input q, or [q,phi] |
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83 | @return: scattering function P(q) |
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84 | """ |
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85 | |
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86 | return CCylinderModel.run(self, x) |
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87 | |
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88 | def runXY(self, x = 0.0): |
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89 | """ Evaluate the model in cartesian coordinates |
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90 | @param x: input q, or [qx, qy] |
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91 | @return: scattering function P(q) |
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92 | """ |
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93 | |
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94 | return CCylinderModel.runXY(self, x) |
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95 | |
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96 | def set_dispersion(self, parameter, dispersion): |
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97 | """ |
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98 | Set the dispersion object for a model parameter |
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99 | @param parameter: name of the parameter [string] |
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100 | @dispersion: dispersion object of type DispersionModel |
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101 | """ |
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102 | return CCylinderModel.set_dispersion(self, parameter, dispersion.cdisp) |
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103 | |
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104 | |
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105 | # End of file |
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