source: sasview/sansmodels/src/sans/models/CoreShellModel.py @ 82826c4

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Last change on this file since 82826c4 was 35aface, checked in by Jae Cho <jhjcho@…>, 14 years ago

addede new models and attr. non_fittable

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File size: 5.2 KB
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[ae3ce4e]1#!/usr/bin/env python
[95986b5]2
[79ac6f8]3##############################################################################
4#       This software was developed by the University of Tennessee as part of the
5#       Distributed Data Analysis of Neutron Scattering Experiments (DANSE)
6#       project funded by the US National Science Foundation.
7#
8#       If you use DANSE applications to do scientific research that leads to
9#       publication, we ask that you acknowledge the use of the software with the
10#       following sentence:
11#
12#       "This work benefited from DANSE software developed under NSF award DMR-0520547."
13#
14#       copyright 2008, University of Tennessee
15##############################################################################
[95986b5]16
17
[79ac6f8]18"""
19Provide functionality for a C extension model
[ae3ce4e]20
[79ac6f8]21:WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY
22         DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\core_shell.h
23         AND RE-RUN THE GENERATOR SCRIPT
[ae3ce4e]24
25"""
26
27from sans.models.BaseComponent import BaseComponent
28from sans_extension.c_models import CCoreShellModel
29import copy   
30   
31class CoreShellModel(CCoreShellModel, BaseComponent):
[79ac6f8]32    """
33    Class that evaluates a CoreShellModel model.
34    This file was auto-generated from ..\c_extensions\core_shell.h.
35    Refer to that file and the structure it contains
36    for details of the model.
37    List of default parameters:
[ae3ce4e]38         scale           = 1.0
[1ed3834]39         radius          = 60.0 [A]
40         thickness       = 10.0 [A]
[27972c1d]41         core_sld        = 1e-006 [1/A^(2)]
42         shell_sld       = 2e-006 [1/A^(2)]
43         solvent_sld     = 3e-006 [1/A^(2)]
[0824909]44         background      = 0.0 [1/cm]
[ae3ce4e]45
46    """
47       
48    def __init__(self):
49        """ Initialization """
50       
51        # Initialize BaseComponent first, then sphere
52        BaseComponent.__init__(self)
53        CCoreShellModel.__init__(self)
54       
55        ## Name of the model
56        self.name = "CoreShellModel"
[836fe6e]57        ## Model description
[1ed3834]58        self.description ="""Form factor for a monodisperse spherical particle with particle
59                with a core-shell structure:
60               
[369e492e]61                The form factor is normalized by the
62                total particle volume.
63               
[1ed3834]64                radius: core radius, thickness: shell thickness
[369e492e]65               
66                Ref: Guinier, A. and G. Fournet,
67                John Wiley and Sons, New York, 1955."""
[836fe6e]68       
[fe9c19b4]69        ## Parameter details [units, min, max]
[ae3ce4e]70        self.details = {}
71        self.details['scale'] = ['', None, None]
[1ed3834]72        self.details['radius'] = ['[A]', None, None]
73        self.details['thickness'] = ['[A]', None, None]
[27972c1d]74        self.details['core_sld'] = ['[1/A^(2)]', None, None]
75        self.details['shell_sld'] = ['[1/A^(2)]', None, None]
76        self.details['solvent_sld'] = ['[1/A^(2)]', None, None]
[0824909]77        self.details['background'] = ['[1/cm]', None, None]
[836fe6e]78
[fe9c19b4]79        ## fittable parameters
[836fe6e]80        self.fixed=['thickness.width', 'radius.width']
[25a608f5]81       
[35aface]82        ## non-fittable parameters
83        self.non_fittable=[]
84       
[25a608f5]85        ## parameters with orientation
86        self.orientation_params =[]
[ae3ce4e]87   
88    def clone(self):
89        """ Return a identical copy of self """
[95986b5]90        return self._clone(CoreShellModel())   
[fe9c19b4]91       
92    def __getstate__(self):
[79ac6f8]93        """
94        return object state for pickling and copying
95        """
[fe9c19b4]96        model_state = {'params': self.params, 'dispersion': self.dispersion, 'log': self.log}
97       
98        return self.__dict__, model_state
99       
100    def __setstate__(self, state):
[79ac6f8]101        """
102        create object from pickled state
103       
104        :param state: the state of the current model
105       
106        """
[fe9c19b4]107       
108        self.__dict__, model_state = state
109        self.params = model_state['params']
110        self.dispersion = model_state['dispersion']
111        self.log = model_state['log']
112       
[ae3ce4e]113   
[79ac6f8]114    def run(self, x=0.0):
115        """
116        Evaluate the model
117       
118        :param x: input q, or [q,phi]
119       
120        :return: scattering function P(q)
121       
[ae3ce4e]122        """
123       
124        return CCoreShellModel.run(self, x)
125   
[79ac6f8]126    def runXY(self, x=0.0):
127        """
128        Evaluate the model in cartesian coordinates
129       
130        :param x: input q, or [qx, qy]
131       
132        :return: scattering function P(q)
133       
[ae3ce4e]134        """
135       
136        return CCoreShellModel.runXY(self, x)
[95986b5]137       
[79ac6f8]138    def evalDistribution(self, x=[]):
139        """
140        Evaluate the model in cartesian coordinates
141       
142        :param x: input q[], or [qx[], qy[]]
143       
144        :return: scattering function P(q[])
145       
[9bd69098]146        """
[f9a1279]147        return CCoreShellModel.evalDistribution(self, x)
[9bd69098]148       
[5eb9154]149    def calculate_ER(self):
[79ac6f8]150        """
151        Calculate the effective radius for P(q)*S(q)
152       
153        :return: the value of the effective radius
154       
[5eb9154]155        """       
156        return CCoreShellModel.calculate_ER(self)
157       
[95986b5]158    def set_dispersion(self, parameter, dispersion):
159        """
[79ac6f8]160        Set the dispersion object for a model parameter
161       
162        :param parameter: name of the parameter [string]
163        :param dispersion: dispersion object of type DispersionModel
164       
[95986b5]165        """
166        return CCoreShellModel.set_dispersion(self, parameter, dispersion.cdisp)
167       
[ae3ce4e]168   
169# End of file
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