source: sasview/sansmodels/src/sans/models/CoreShellModel.py @ 64f0c5d

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Last change on this file since 64f0c5d was c7a7e1b, checked in by Gervaise Alina <gervyh@…>, 14 years ago

working on model pickle

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[ae3ce4e]1#!/usr/bin/env python
[95986b5]2
[79ac6f8]3##############################################################################
4#       This software was developed by the University of Tennessee as part of the
5#       Distributed Data Analysis of Neutron Scattering Experiments (DANSE)
6#       project funded by the US National Science Foundation.
7#
8#       If you use DANSE applications to do scientific research that leads to
9#       publication, we ask that you acknowledge the use of the software with the
10#       following sentence:
11#
12#       "This work benefited from DANSE software developed under NSF award DMR-0520547."
13#
14#       copyright 2008, University of Tennessee
15##############################################################################
[95986b5]16
17
[79ac6f8]18"""
19Provide functionality for a C extension model
[ae3ce4e]20
[79ac6f8]21:WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY
22         DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\core_shell.h
23         AND RE-RUN THE GENERATOR SCRIPT
[ae3ce4e]24
25"""
26
27from sans.models.BaseComponent import BaseComponent
28from sans_extension.c_models import CCoreShellModel
29import copy   
[96656e3]30
31def create_CoreShellModel():
32    obj = CoreShellModel()
33    #CCoreShellModel.__init__(obj) is called by CoreShellModel constructor
34    return obj
35
[ae3ce4e]36class CoreShellModel(CCoreShellModel, BaseComponent):
[79ac6f8]37    """
38    Class that evaluates a CoreShellModel model.
39    This file was auto-generated from ..\c_extensions\core_shell.h.
40    Refer to that file and the structure it contains
41    for details of the model.
42    List of default parameters:
[ae3ce4e]43         scale           = 1.0
[1ed3834]44         radius          = 60.0 [A]
45         thickness       = 10.0 [A]
[27972c1d]46         core_sld        = 1e-006 [1/A^(2)]
47         shell_sld       = 2e-006 [1/A^(2)]
48         solvent_sld     = 3e-006 [1/A^(2)]
[0824909]49         background      = 0.0 [1/cm]
[ae3ce4e]50
51    """
52       
53    def __init__(self):
54        """ Initialization """
55       
56        # Initialize BaseComponent first, then sphere
57        BaseComponent.__init__(self)
[96656e3]58        #apply(CCoreShellModel.__init__, (self,))
[ae3ce4e]59        CCoreShellModel.__init__(self)
60       
61        ## Name of the model
62        self.name = "CoreShellModel"
[836fe6e]63        ## Model description
[1ed3834]64        self.description ="""Form factor for a monodisperse spherical particle with particle
65                with a core-shell structure:
66               
[369e492e]67                The form factor is normalized by the
68                total particle volume.
69               
[1ed3834]70                radius: core radius, thickness: shell thickness
[369e492e]71               
72                Ref: Guinier, A. and G. Fournet,
73                John Wiley and Sons, New York, 1955."""
[836fe6e]74       
[fe9c19b4]75        ## Parameter details [units, min, max]
[ae3ce4e]76        self.details = {}
77        self.details['scale'] = ['', None, None]
[1ed3834]78        self.details['radius'] = ['[A]', None, None]
79        self.details['thickness'] = ['[A]', None, None]
[27972c1d]80        self.details['core_sld'] = ['[1/A^(2)]', None, None]
81        self.details['shell_sld'] = ['[1/A^(2)]', None, None]
82        self.details['solvent_sld'] = ['[1/A^(2)]', None, None]
[0824909]83        self.details['background'] = ['[1/cm]', None, None]
[836fe6e]84
[fe9c19b4]85        ## fittable parameters
[836fe6e]86        self.fixed=['thickness.width', 'radius.width']
[25a608f5]87       
[35aface]88        ## non-fittable parameters
[96656e3]89        self.non_fittable = []
[35aface]90       
[25a608f5]91        ## parameters with orientation
[96656e3]92        self.orientation_params = []
[c7a7e1b]93
94    def __setstate__(self, state):
95        """
96        restore the state of a model from pickle
97        """
98        self.__dict__, self.params, self.dispersion = state
99       
[96656e3]100    def __reduce_ex__(self, proto):
[79ac6f8]101        """
[96656e3]102        Overwrite the __reduce_ex__ of PyTypeObject *type call in the init of
103        c model.
[79ac6f8]104        """
[c7a7e1b]105        state = (self.__dict__, self.params, self.dispersion)
106        return (create_CoreShellModel,tuple(), state, None, None)
[fe9c19b4]107       
[96656e3]108    def clone(self):
109        """ Return a identical copy of self """
110        return self._clone(CoreShellModel())   
[fe9c19b4]111       
[ae3ce4e]112   
[79ac6f8]113    def run(self, x=0.0):
114        """
115        Evaluate the model
116       
117        :param x: input q, or [q,phi]
118       
119        :return: scattering function P(q)
120       
[ae3ce4e]121        """
122       
123        return CCoreShellModel.run(self, x)
124   
[79ac6f8]125    def runXY(self, x=0.0):
126        """
127        Evaluate the model in cartesian coordinates
128       
129        :param x: input q, or [qx, qy]
130       
131        :return: scattering function P(q)
132       
[ae3ce4e]133        """
134       
135        return CCoreShellModel.runXY(self, x)
[95986b5]136       
[79ac6f8]137    def evalDistribution(self, x=[]):
138        """
139        Evaluate the model in cartesian coordinates
140       
141        :param x: input q[], or [qx[], qy[]]
142       
143        :return: scattering function P(q[])
144       
[9bd69098]145        """
[f9a1279]146        return CCoreShellModel.evalDistribution(self, x)
[9bd69098]147       
[5eb9154]148    def calculate_ER(self):
[79ac6f8]149        """
150        Calculate the effective radius for P(q)*S(q)
151       
152        :return: the value of the effective radius
153       
[5eb9154]154        """       
155        return CCoreShellModel.calculate_ER(self)
156       
[95986b5]157    def set_dispersion(self, parameter, dispersion):
158        """
[79ac6f8]159        Set the dispersion object for a model parameter
160       
161        :param parameter: name of the parameter [string]
162        :param dispersion: dispersion object of type DispersionModel
163       
[95986b5]164        """
165        return CCoreShellModel.set_dispersion(self, parameter, dispersion.cdisp)
166       
[ae3ce4e]167   
168# End of file
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