1 | #!/usr/bin/env python |
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2 | """ |
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3 | This software was developed by the University of Tennessee as part of the |
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4 | Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
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5 | project funded by the US National Science Foundation. |
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6 | |
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7 | If you use DANSE applications to do scientific research that leads to |
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8 | publication, we ask that you acknowledge the use of the software with the |
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9 | following sentence: |
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10 | |
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11 | "This work benefited from DANSE software developed under NSF award DMR-0520547." |
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12 | |
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13 | copyright 2008, University of Tennessee |
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14 | """ |
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15 | |
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16 | """ Provide functionality for a C extension model |
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17 | |
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18 | WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
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19 | DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\core_shell_cylinder.h |
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20 | AND RE-RUN THE GENERATOR SCRIPT |
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21 | |
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22 | """ |
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23 | |
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24 | from sans.models.BaseComponent import BaseComponent |
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25 | from sans_extension.c_models import CCoreShellCylinderModel |
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26 | import copy |
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27 | |
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28 | class CoreShellCylinderModel(CCoreShellCylinderModel, BaseComponent): |
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29 | """ Class that evaluates a CoreShellCylinderModel model. |
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30 | This file was auto-generated from ..\c_extensions\core_shell_cylinder.h. |
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31 | Refer to that file and the structure it contains |
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32 | for details of the model. |
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33 | List of default parameters: |
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34 | scale = 1.0 |
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35 | radius = 20.0 [A] |
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36 | thickness = 10.0 [A] |
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37 | length = 400.0 [A] |
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38 | core_sld = 1e-006 [1/A²] |
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39 | shell_sld = 4e-006 [1/A²] |
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40 | solvent_sld = 1e-006 [1/A²] |
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41 | background = 0.0 [1/cm] |
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42 | axis_theta = 1.57 [rad] |
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43 | axis_phi = 0.0 [rad] |
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44 | |
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45 | """ |
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46 | |
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47 | def __init__(self): |
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48 | """ Initialization """ |
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49 | |
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50 | # Initialize BaseComponent first, then sphere |
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51 | BaseComponent.__init__(self) |
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52 | CCoreShellCylinderModel.__init__(self) |
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53 | |
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54 | ## Name of the model |
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55 | self.name = "CoreShellCylinderModel" |
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56 | ## Model description |
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57 | self.description ="""P(q,alpha)= scale/Vs*f(q)^(2) + bkg, where: f(q)= 2(core_sld |
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58 | - solvant_sld)* Vc*sin[qLcos(alpha/2)] |
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59 | /[qLcos(alpha/2)]*J1(qRsin(alpha)) |
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60 | /[qRsin(alpha)]+2(shell_sld-solvent_sld) |
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61 | *Vs*sin[q(L+T)cos(alpha/2)][[q(L+T) |
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62 | *cos(alpha/2)]*J1(q(R+T)sin(alpha)) |
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63 | /q(R+T)sin(alpha)] |
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64 | |
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65 | alpha:is the angle between the axis of |
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66 | the cylinder and the q-vector |
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67 | Vs: the volume of the outer shell |
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68 | Vc: the volume of the core |
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69 | L: the length of the core |
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70 | shell_sld: the scattering length density |
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71 | of the shell |
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72 | solvent_sld: the scattering length density |
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73 | of the solvent |
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74 | bkg: the background |
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75 | T: the thickness |
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76 | R+T: is the outer radius |
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77 | L+2T: The total length of the outershell |
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78 | J1: the first order Bessel function |
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79 | theta: axis_theta of the cylinder |
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80 | phi: the axis_phi of the cylinder...""" |
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81 | |
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82 | ## Parameter details [units, min, max] |
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83 | self.details = {} |
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84 | self.details['scale'] = ['', None, None] |
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85 | self.details['radius'] = ['[A]', None, None] |
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86 | self.details['thickness'] = ['[A]', None, None] |
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87 | self.details['length'] = ['[A]', None, None] |
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88 | self.details['core_sld'] = ['[1/A²]', None, None] |
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89 | self.details['shell_sld'] = ['[1/A²]', None, None] |
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90 | self.details['solvent_sld'] = ['[1/A²]', None, None] |
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91 | self.details['background'] = ['[1/cm]', None, None] |
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92 | self.details['axis_theta'] = ['[rad]', None, None] |
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93 | self.details['axis_phi'] = ['[rad]', None, None] |
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94 | |
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95 | ## fittable parameters |
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96 | self.fixed=['axis_phi.width', 'axis_theta.width', 'length.width', 'radius.width', 'thickness.width'] |
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97 | |
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98 | ## parameters with orientation |
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99 | self.orientation_params =['axis_phi', 'axis_theta', 'axis_phi.width', 'axis_theta.width'] |
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100 | |
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101 | def clone(self): |
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102 | """ Return a identical copy of self """ |
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103 | return self._clone(CoreShellCylinderModel()) |
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104 | |
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105 | def run(self, x = 0.0): |
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106 | """ Evaluate the model |
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107 | @param x: input q, or [q,phi] |
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108 | @return: scattering function P(q) |
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109 | """ |
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110 | |
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111 | return CCoreShellCylinderModel.run(self, x) |
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112 | |
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113 | def runXY(self, x = 0.0): |
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114 | """ Evaluate the model in cartesian coordinates |
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115 | @param x: input q, or [qx, qy] |
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116 | @return: scattering function P(q) |
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117 | """ |
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118 | |
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119 | return CCoreShellCylinderModel.runXY(self, x) |
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120 | |
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121 | def evalDistribition(self, x = []): |
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122 | """ Evaluate the model in cartesian coordinates |
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123 | @param x: input q[], or [qx[], qy[]] |
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124 | @return: scattering function P(q[]) |
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125 | """ |
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126 | return CCoreShellCylinderModel.evalDistribition(self, x) |
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127 | |
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128 | def set_dispersion(self, parameter, dispersion): |
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129 | """ |
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130 | Set the dispersion object for a model parameter |
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131 | @param parameter: name of the parameter [string] |
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132 | @dispersion: dispersion object of type DispersionModel |
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133 | """ |
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134 | return CCoreShellCylinderModel.set_dispersion(self, parameter, dispersion.cdisp) |
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135 | |
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136 | |
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137 | # End of file |
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