source: sasview/sansmodels/src/sans/models/CoreFourShellModel.py @ bdc25e2

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Last change on this file since bdc25e2 was c7a7e1b, checked in by Gervaise Alina <gervyh@…>, 14 years ago

working on model pickle

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1#!/usr/bin/env python
2
3##############################################################################
4#       This software was developed by the University of Tennessee as part of the
5#       Distributed Data Analysis of Neutron Scattering Experiments (DANSE)
6#       project funded by the US National Science Foundation.
7#
8#       If you use DANSE applications to do scientific research that leads to
9#       publication, we ask that you acknowledge the use of the software with the
10#       following sentence:
11#
12#       "This work benefited from DANSE software developed under NSF award DMR-0520547."
13#
14#       copyright 2008, University of Tennessee
15##############################################################################
16
17
18"""
19Provide functionality for a C extension model
20
21:WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY
22         DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\corefourshell.h
23         AND RE-RUN THE GENERATOR SCRIPT
24
25"""
26
27from sans.models.BaseComponent import BaseComponent
28from sans_extension.c_models import CCoreFourShellModel
29import copy   
30
31def create_CoreFourShellModel():
32    obj = CoreFourShellModel()
33    #CCoreFourShellModel.__init__(obj) is called by CoreFourShellModel constructor
34    return obj
35
36class CoreFourShellModel(CCoreFourShellModel, BaseComponent):
37    """
38    Class that evaluates a CoreFourShellModel model.
39    This file was auto-generated from ..\c_extensions\corefourshell.h.
40    Refer to that file and the structure it contains
41    for details of the model.
42    List of default parameters:
43         scale           = 1.0
44         rad_core0       = 60.0 [A]
45         sld_core0       = 6.4e-006 [1/A^(2)]
46         thick_shell1    = 10.0 [A]
47         sld_shell1      = 1e-006 [1/A^(2)]
48         thick_shell2    = 10.0 [A]
49         sld_shell2      = 2e-006 [1/A^(2)]
50         thick_shell3    = 10.0 [A]
51         sld_shell3      = 3e-006 [1/A^(2)]
52         thick_shell4    = 10.0 [A]
53         sld_shell4      = 4e-006 [1/A^(2)]
54         sld_solv        = 6.4e-006 [1/A^(2)]
55         background      = 0.001 [1/cm]
56
57    """
58       
59    def __init__(self):
60        """ Initialization """
61       
62        # Initialize BaseComponent first, then sphere
63        BaseComponent.__init__(self)
64        #apply(CCoreFourShellModel.__init__, (self,))
65        CCoreFourShellModel.__init__(self)
66       
67        ## Name of the model
68        self.name = "CoreFourShellModel"
69        ## Model description
70        self.description =""" Calculates the scattering intensity from a core-4 shell structure.
71                scale = scale factor * volume fraction
72                rad_core0: the radius of the core
73                sld_core0: the SLD of the core
74                thick_shelli: the thickness of the i'th shell from the core
75                sld_shelli: the SLD of the i'th shell from the core
76                sld_solv: the SLD of the solvent
77                background: incoherent background"""
78       
79        ## Parameter details [units, min, max]
80        self.details = {}
81        self.details['scale'] = ['', None, None]
82        self.details['rad_core0'] = ['[A]', None, None]
83        self.details['sld_core0'] = ['[1/A^(2)]', None, None]
84        self.details['thick_shell1'] = ['[A]', None, None]
85        self.details['sld_shell1'] = ['[1/A^(2)]', None, None]
86        self.details['thick_shell2'] = ['[A]', None, None]
87        self.details['sld_shell2'] = ['[1/A^(2)]', None, None]
88        self.details['thick_shell3'] = ['[A]', None, None]
89        self.details['sld_shell3'] = ['[1/A^(2)]', None, None]
90        self.details['thick_shell4'] = ['[A]', None, None]
91        self.details['sld_shell4'] = ['[1/A^(2)]', None, None]
92        self.details['sld_solv'] = ['[1/A^(2)]', None, None]
93        self.details['background'] = ['[1/cm]', None, None]
94
95        ## fittable parameters
96        self.fixed=['thick_shell4.width', 'thick_shell1.width', 'thick_shell2.width', 'thick_shell3.width', 'rad_core0.width']
97       
98        ## non-fittable parameters
99        self.non_fittable = []
100       
101        ## parameters with orientation
102        self.orientation_params = []
103
104    def __setstate__(self, state):
105        """
106        restore the state of a model from pickle
107        """
108        self.__dict__, self.params, self.dispersion = state
109       
110    def __reduce_ex__(self, proto):
111        """
112        Overwrite the __reduce_ex__ of PyTypeObject *type call in the init of
113        c model.
114        """
115        state = (self.__dict__, self.params, self.dispersion)
116        return (create_CoreFourShellModel,tuple(), state, None, None)
117       
118    def clone(self):
119        """ Return a identical copy of self """
120        return self._clone(CoreFourShellModel())   
121       
122   
123    def run(self, x=0.0):
124        """
125        Evaluate the model
126       
127        :param x: input q, or [q,phi]
128       
129        :return: scattering function P(q)
130       
131        """
132       
133        return CCoreFourShellModel.run(self, x)
134   
135    def runXY(self, x=0.0):
136        """
137        Evaluate the model in cartesian coordinates
138       
139        :param x: input q, or [qx, qy]
140       
141        :return: scattering function P(q)
142       
143        """
144       
145        return CCoreFourShellModel.runXY(self, x)
146       
147    def evalDistribution(self, x=[]):
148        """
149        Evaluate the model in cartesian coordinates
150       
151        :param x: input q[], or [qx[], qy[]]
152       
153        :return: scattering function P(q[])
154       
155        """
156        return CCoreFourShellModel.evalDistribution(self, x)
157       
158    def calculate_ER(self):
159        """
160        Calculate the effective radius for P(q)*S(q)
161       
162        :return: the value of the effective radius
163       
164        """       
165        return CCoreFourShellModel.calculate_ER(self)
166       
167    def set_dispersion(self, parameter, dispersion):
168        """
169        Set the dispersion object for a model parameter
170       
171        :param parameter: name of the parameter [string]
172        :param dispersion: dispersion object of type DispersionModel
173       
174        """
175        return CCoreFourShellModel.set_dispersion(self, parameter, dispersion.cdisp)
176       
177   
178# End of file
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