source: sasview/sansmodels/src/sans/models/CoreFourShellModel.py @ 02879ea

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Last change on this file since 02879ea was 339ce67, checked in by Jae Cho <jhjcho@…>, 14 years ago

added some models and tests
  • Property mode set to 100644
File size: 6.0 KB
Line 
1#!/usr/bin/env python
2
3##############################################################################
4#       This software was developed by the University of Tennessee as part of the
5#       Distributed Data Analysis of Neutron Scattering Experiments (DANSE)
6#       project funded by the US National Science Foundation.
7#
8#       If you use DANSE applications to do scientific research that leads to
9#       publication, we ask that you acknowledge the use of the software with the
10#       following sentence:
11#
12#       "This work benefited from DANSE software developed under NSF award DMR-0520547."
13#
14#       copyright 2008, University of Tennessee
15##############################################################################
16
17
18"""
19Provide functionality for a C extension model
20
21:WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY
22         DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\corefourshell.h
23         AND RE-RUN THE GENERATOR SCRIPT
24
25"""
26
27from sans.models.BaseComponent import BaseComponent
28from sans_extension.c_models import CCoreFourShellModel
29import copy   
30   
31class CoreFourShellModel(CCoreFourShellModel, BaseComponent):
32    """
33    Class that evaluates a CoreFourShellModel model.
34    This file was auto-generated from ..\c_extensions\corefourshell.h.
35    Refer to that file and the structure it contains
36    for details of the model.
37    List of default parameters:
38         scale           = 1.0
39         rad_core0       = 60.0 [A]
40         sld_core0       = 6.4e-006 [1/A^(2)]
41         thick_shell1    = 10.0 [A]
42         sld_shell1      = 1e-006 [1/A^(2)]
43         thick_shell2    = 10.0 [A]
44         sld_shell2      = 2e-006 [1/A^(2)]
45         thick_shell3    = 10.0 [A]
46         sld_shell3      = 3e-006 [1/A^(2)]
47         thick_shell4    = 10.0 [A]
48         sld_shell4      = 4e-006 [1/A^(2)]
49         sld_solv        = 6.4e-006 [1/A^(2)]
50         background      = 0.001 [1/cm]
51
52    """
53       
54    def __init__(self):
55        """ Initialization """
56       
57        # Initialize BaseComponent first, then sphere
58        BaseComponent.__init__(self)
59        CCoreFourShellModel.__init__(self)
60       
61        ## Name of the model
62        self.name = "CoreFourShellModel"
63        ## Model description
64        self.description =""" Calculates the scattering intensity from a core-4 shell structure.
65                scale = scale factor * volume fraction
66                rad_core0: the radius of the core
67                sld_core0: the SLD of the core
68                thick_shelli: the thickness of the i'th shell from the core
69                sld_shelli: the SLD of the i'th shell from the core
70                sld_solv: the SLD of the solvent
71                background: incoherent background"""
72       
73        ## Parameter details [units, min, max]
74        self.details = {}
75        self.details['scale'] = ['', None, None]
76        self.details['rad_core0'] = ['[A]', None, None]
77        self.details['sld_core0'] = ['[1/A^(2)]', None, None]
78        self.details['thick_shell1'] = ['[A]', None, None]
79        self.details['sld_shell1'] = ['[1/A^(2)]', None, None]
80        self.details['thick_shell2'] = ['[A]', None, None]
81        self.details['sld_shell2'] = ['[1/A^(2)]', None, None]
82        self.details['thick_shell3'] = ['[A]', None, None]
83        self.details['sld_shell3'] = ['[1/A^(2)]', None, None]
84        self.details['thick_shell4'] = ['[A]', None, None]
85        self.details['sld_shell4'] = ['[1/A^(2)]', None, None]
86        self.details['sld_solv'] = ['[1/A^(2)]', None, None]
87        self.details['background'] = ['[1/cm]', None, None]
88
89        ## fittable parameters
90        self.fixed=['thick_shell4.width', 'thick_shell1.width', 'thick_shell2.width', 'thick_shell3.width', 'rad_core0.width']
91       
92        ## non-fittable parameters
93        self.non_fittable=[]
94       
95        ## parameters with orientation
96        self.orientation_params =[]
97   
98    def clone(self):
99        """ Return a identical copy of self """
100        return self._clone(CoreFourShellModel())   
101       
102    def __getstate__(self):
103        """
104        return object state for pickling and copying
105        """
106        model_state = {'params': self.params, 'dispersion': self.dispersion, 'log': self.log}
107       
108        return self.__dict__, model_state
109       
110    def __setstate__(self, state):
111        """
112        create object from pickled state
113       
114        :param state: the state of the current model
115       
116        """
117       
118        self.__dict__, model_state = state
119        self.params = model_state['params']
120        self.dispersion = model_state['dispersion']
121        self.log = model_state['log']
122       
123   
124    def run(self, x=0.0):
125        """
126        Evaluate the model
127       
128        :param x: input q, or [q,phi]
129       
130        :return: scattering function P(q)
131       
132        """
133       
134        return CCoreFourShellModel.run(self, x)
135   
136    def runXY(self, x=0.0):
137        """
138        Evaluate the model in cartesian coordinates
139       
140        :param x: input q, or [qx, qy]
141       
142        :return: scattering function P(q)
143       
144        """
145       
146        return CCoreFourShellModel.runXY(self, x)
147       
148    def evalDistribution(self, x=[]):
149        """
150        Evaluate the model in cartesian coordinates
151       
152        :param x: input q[], or [qx[], qy[]]
153       
154        :return: scattering function P(q[])
155       
156        """
157        return CCoreFourShellModel.evalDistribution(self, x)
158       
159    def calculate_ER(self):
160        """
161        Calculate the effective radius for P(q)*S(q)
162       
163        :return: the value of the effective radius
164       
165        """       
166        return CCoreFourShellModel.calculate_ER(self)
167       
168    def set_dispersion(self, parameter, dispersion):
169        """
170        Set the dispersion object for a model parameter
171       
172        :param parameter: name of the parameter [string]
173        :param dispersion: dispersion object of type DispersionModel
174       
175        """
176        return CCoreFourShellModel.set_dispersion(self, parameter, dispersion.cdisp)
177       
178   
179# End of file
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