[18f2ca1] | 1 | #!/usr/bin/env python |
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| 2 | |
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| 3 | ############################################################################## |
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| 4 | # This software was developed by the University of Tennessee as part of the |
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| 5 | # Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
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| 6 | # project funded by the US National Science Foundation. |
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| 7 | # |
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| 8 | # If you use DANSE applications to do scientific research that leads to |
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| 9 | # publication, we ask that you acknowledge the use of the software with the |
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| 10 | # following sentence: |
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| 11 | # |
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| 12 | # "This work benefited from DANSE software developed under NSF award DMR-0520547." |
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| 13 | # |
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| 14 | # copyright 2008, University of Tennessee |
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| 15 | ############################################################################## |
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| 16 | |
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| 17 | |
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| 18 | """ |
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| 19 | Provide functionality for a C extension model |
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| 20 | |
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| 21 | :WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
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[b1c3295] | 22 | DO NOT MODIFY THIS FILE, MODIFY ../c_extensions/csparallelepiped.h |
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[18f2ca1] | 23 | AND RE-RUN THE GENERATOR SCRIPT |
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| 24 | |
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| 25 | """ |
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| 26 | |
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| 27 | from sans.models.BaseComponent import BaseComponent |
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[92df66f8] | 28 | from sans.models.sans_extension.c_models import CCSParallelepipedModel |
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[18f2ca1] | 29 | import copy |
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[96656e3] | 30 | |
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| 31 | def create_CSParallelepipedModel(): |
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| 32 | obj = CSParallelepipedModel() |
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| 33 | #CCSParallelepipedModel.__init__(obj) is called by CSParallelepipedModel constructor |
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| 34 | return obj |
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| 35 | |
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[18f2ca1] | 36 | class CSParallelepipedModel(CCSParallelepipedModel, BaseComponent): |
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| 37 | """ |
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| 38 | Class that evaluates a CSParallelepipedModel model. |
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[b1c3295] | 39 | This file was auto-generated from ../c_extensions/csparallelepiped.h. |
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[18f2ca1] | 40 | Refer to that file and the structure it contains |
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| 41 | for details of the model. |
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[b1c3295] | 42 | List of default parameters: |
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| 43 | scale = 1.0 |
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| 44 | shortA = 35.0 [A] |
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| 45 | midB = 75.0 [A] |
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| 46 | longC = 400.0 [A] |
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| 47 | rimA = 10.0 [A] |
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| 48 | rimB = 10.0 [A] |
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| 49 | rimC = 10.0 [A] |
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| 50 | sld_rimA = 2e-06 [1/A^(2)] |
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| 51 | sld_rimB = 4e-06 [1/A^(2)] |
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| 52 | sld_rimC = 2e-06 [1/A^(2)] |
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| 53 | sld_pcore = 1e-06 [1/A^(2)] |
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| 54 | sld_solv = 6e-06 [1/A^(2)] |
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| 55 | background = 0.06 [1/cm] |
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| 56 | parallel_theta = 0.0 [deg] |
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| 57 | parallel_phi = 0.0 [deg] |
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| 58 | parallel_psi = 0.0 [deg] |
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[18f2ca1] | 59 | |
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| 60 | """ |
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| 61 | |
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| 62 | def __init__(self): |
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| 63 | """ Initialization """ |
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| 64 | |
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| 65 | # Initialize BaseComponent first, then sphere |
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| 66 | BaseComponent.__init__(self) |
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[96656e3] | 67 | #apply(CCSParallelepipedModel.__init__, (self,)) |
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[18f2ca1] | 68 | CCSParallelepipedModel.__init__(self) |
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| 69 | |
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| 70 | ## Name of the model |
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| 71 | self.name = "CSParallelepipedModel" |
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| 72 | ## Model description |
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[b1c3295] | 73 | self.description =""" Form factor for a rectangular Shell. Below are the Parameters. |
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| 74 | scale: scale factor |
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| 75 | shortA: length of short edge [A] |
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| 76 | midB: length of another short edge [A] |
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| 77 | longC: length of long edge of the parallelepiped [A] |
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| 78 | rimA: length of short edge [A] |
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| 79 | rimB: length of another short edge [A] |
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| 80 | rimC: length of long edge of the parallelepiped [A] |
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| 81 | sld_rimA: sld of rimA [1/A^(2)] |
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| 82 | sld_rimB: sld of rimB [1/A^(2)] |
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| 83 | sld_rimC: sld of rimC [1/A^(2)] |
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| 84 | sld_core: Pipe_sld [1/A^(2)] |
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| 85 | sld_solv: solvent_sld [1/A^(2)] |
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[18f2ca1] | 86 | background: incoherent Background [1/cm]""" |
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| 87 | |
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[b1c3295] | 88 | ## Parameter details [units, min, max] |
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| 89 | self.details = {} |
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| 90 | self.details['scale'] = ['', None, None] |
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| 91 | self.details['shortA'] = ['[A]', None, None] |
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| 92 | self.details['midB'] = ['[A]', None, None] |
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| 93 | self.details['longC'] = ['[A]', None, None] |
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| 94 | self.details['rimA'] = ['[A]', None, None] |
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| 95 | self.details['rimB'] = ['[A]', None, None] |
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| 96 | self.details['rimC'] = ['[A]', None, None] |
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| 97 | self.details['sld_rimA'] = ['[1/A^(2)]', None, None] |
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| 98 | self.details['sld_rimB'] = ['[1/A^(2)]', None, None] |
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| 99 | self.details['sld_rimC'] = ['[1/A^(2)]', None, None] |
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| 100 | self.details['sld_pcore'] = ['[1/A^(2)]', None, None] |
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| 101 | self.details['sld_solv'] = ['[1/A^(2)]', None, None] |
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| 102 | self.details['background'] = ['[1/cm]', None, None] |
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| 103 | self.details['parallel_theta'] = ['[deg]', None, None] |
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| 104 | self.details['parallel_phi'] = ['[deg]', None, None] |
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| 105 | self.details['parallel_psi'] = ['[deg]', None, None] |
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[18f2ca1] | 106 | |
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| 107 | ## fittable parameters |
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| 108 | self.fixed=['shortA.width', 'midB.width', 'longC.width', 'parallel_phi.width', 'parallel_psi.width', 'parallel_theta.width'] |
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| 109 | |
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| 110 | ## non-fittable parameters |
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[96656e3] | 111 | self.non_fittable = [] |
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[18f2ca1] | 112 | |
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| 113 | ## parameters with orientation |
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[96656e3] | 114 | self.orientation_params = ['parallel_phi', 'parallel_psi', 'parallel_theta', 'parallel_phi.width', 'parallel_psi.width', 'parallel_theta.width'] |
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[c7a7e1b] | 115 | |
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| 116 | def __setstate__(self, state): |
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| 117 | """ |
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| 118 | restore the state of a model from pickle |
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| 119 | """ |
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| 120 | self.__dict__, self.params, self.dispersion = state |
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| 121 | |
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[96656e3] | 122 | def __reduce_ex__(self, proto): |
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[18f2ca1] | 123 | """ |
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[96656e3] | 124 | Overwrite the __reduce_ex__ of PyTypeObject *type call in the init of |
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| 125 | c model. |
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[18f2ca1] | 126 | """ |
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[c7a7e1b] | 127 | state = (self.__dict__, self.params, self.dispersion) |
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| 128 | return (create_CSParallelepipedModel,tuple(), state, None, None) |
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[18f2ca1] | 129 | |
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[96656e3] | 130 | def clone(self): |
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| 131 | """ Return a identical copy of self """ |
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| 132 | return self._clone(CSParallelepipedModel()) |
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[18f2ca1] | 133 | |
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| 134 | |
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| 135 | def run(self, x=0.0): |
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| 136 | """ |
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| 137 | Evaluate the model |
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| 138 | |
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| 139 | :param x: input q, or [q,phi] |
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| 140 | |
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| 141 | :return: scattering function P(q) |
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| 142 | |
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| 143 | """ |
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| 144 | |
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| 145 | return CCSParallelepipedModel.run(self, x) |
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| 146 | |
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| 147 | def runXY(self, x=0.0): |
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| 148 | """ |
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| 149 | Evaluate the model in cartesian coordinates |
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| 150 | |
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| 151 | :param x: input q, or [qx, qy] |
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| 152 | |
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| 153 | :return: scattering function P(q) |
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| 154 | |
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| 155 | """ |
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| 156 | |
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| 157 | return CCSParallelepipedModel.runXY(self, x) |
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| 158 | |
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| 159 | def evalDistribution(self, x=[]): |
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| 160 | """ |
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| 161 | Evaluate the model in cartesian coordinates |
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| 162 | |
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| 163 | :param x: input q[], or [qx[], qy[]] |
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| 164 | |
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| 165 | :return: scattering function P(q[]) |
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| 166 | |
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| 167 | """ |
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| 168 | return CCSParallelepipedModel.evalDistribution(self, x) |
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| 169 | |
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| 170 | def calculate_ER(self): |
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| 171 | """ |
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| 172 | Calculate the effective radius for P(q)*S(q) |
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| 173 | |
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| 174 | :return: the value of the effective radius |
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| 175 | |
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| 176 | """ |
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| 177 | return CCSParallelepipedModel.calculate_ER(self) |
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| 178 | |
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| 179 | def set_dispersion(self, parameter, dispersion): |
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| 180 | """ |
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| 181 | Set the dispersion object for a model parameter |
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| 182 | |
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| 183 | :param parameter: name of the parameter [string] |
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| 184 | :param dispersion: dispersion object of type DispersionModel |
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| 185 | |
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| 186 | """ |
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| 187 | return CCSParallelepipedModel.set_dispersion(self, parameter, dispersion.cdisp) |
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| 188 | |
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| 189 | |
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[b1c3295] | 190 | # End of file |
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