[af03ddd] | 1 | #!/usr/bin/env python |
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| 2 | |
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[79ac6f8] | 3 | ############################################################################## |
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| 4 | # This software was developed by the University of Tennessee as part of the |
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| 5 | # Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
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| 6 | # project funded by the US National Science Foundation. |
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| 7 | # |
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| 8 | # If you use DANSE applications to do scientific research that leads to |
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| 9 | # publication, we ask that you acknowledge the use of the software with the |
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| 10 | # following sentence: |
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| 11 | # |
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| 12 | # "This work benefited from DANSE software developed under NSF award DMR-0520547." |
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| 13 | # |
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| 14 | # copyright 2008, University of Tennessee |
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| 15 | ############################################################################## |
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[af03ddd] | 16 | |
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| 17 | |
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[79ac6f8] | 18 | """ |
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| 19 | Provide functionality for a C extension model |
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[af03ddd] | 20 | |
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[79ac6f8] | 21 | :WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
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| 22 | DO NOT MODIFY THIS FILE, MODIFY [INCLUDE_FILE] |
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| 23 | AND RE-RUN THE GENERATOR SCRIPT |
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[af03ddd] | 24 | |
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| 25 | """ |
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| 26 | |
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| 27 | from sans.models.BaseComponent import BaseComponent |
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[f578ad4] | 28 | from sans.models.sans_extension.c_models import [CPYTHONCLASS] |
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[5650ebf] | 29 | |
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[5625551] | 30 | # Disable pylint warnings that have to do with API choices |
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| 31 | # pylint: disable=C0103 |
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| 32 | |
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[5650ebf] | 33 | def create_[PYTHONCLASS](): |
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[411d8bf] | 34 | """ |
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| 35 | Create a model instance |
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| 36 | """ |
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[5650ebf] | 37 | obj = [PYTHONCLASS]() |
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| 38 | #[CPYTHONCLASS].__init__(obj) is called by [PYTHONCLASS] constructor |
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| 39 | return obj |
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| 40 | |
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[af03ddd] | 41 | class [PYTHONCLASS]([CPYTHONCLASS], BaseComponent): |
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[79ac6f8] | 42 | """ |
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| 43 | Class that evaluates a [PYTHONCLASS] model. |
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| 44 | This file was auto-generated from [INCLUDE_FILE]. |
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| 45 | Refer to that file and the structure it contains |
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| 46 | for details of the model. |
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| 47 | [DEFAULT_LIST] |
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[af03ddd] | 48 | """ |
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| 49 | |
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| 50 | def __init__(self): |
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| 51 | """ Initialization """ |
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| 52 | |
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| 53 | # Initialize BaseComponent first, then sphere |
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| 54 | BaseComponent.__init__(self) |
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[5650ebf] | 55 | #apply([CPYTHONCLASS].__init__, (self,)) |
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[af03ddd] | 56 | [CPYTHONCLASS].__init__(self) |
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| 57 | |
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| 58 | ## Name of the model |
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| 59 | self.name = "[PYTHONCLASS]" |
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[836fe6e] | 60 | ## Model description |
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[411d8bf] | 61 | self.description = """[DESCRIPTION]""" |
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[836fe6e] | 62 | |
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[fe9c19b4] | 63 | [PAR_DETAILS] |
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| 64 | ## fittable parameters |
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[411d8bf] | 65 | self.fixed = [FIXED] |
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[25a608f5] | 66 | |
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[8622241] | 67 | ## non-fittable parameters |
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| 68 | self.non_fittable = [NON_FITTABLE_PARAMS] |
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| 69 | |
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[25a608f5] | 70 | ## parameters with orientation |
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[8622241] | 71 | self.orientation_params = [ORIENTATION_PARAMS] |
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[2360a7b] | 72 | |
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| 73 | def __setstate__(self, state): |
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| 74 | """ |
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| 75 | restore the state of a model from pickle |
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| 76 | """ |
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| 77 | self.__dict__, self.params, self.dispersion = state |
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| 78 | |
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[5650ebf] | 79 | def __reduce_ex__(self, proto): |
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[79ac6f8] | 80 | """ |
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[5650ebf] | 81 | Overwrite the __reduce_ex__ of PyTypeObject *type call in the init of |
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| 82 | c model. |
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[79ac6f8] | 83 | """ |
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[2360a7b] | 84 | state = (self.__dict__, self.params, self.dispersion) |
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[411d8bf] | 85 | return (create_[PYTHONCLASS], tuple(), state, None, None) |
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[fe9c19b4] | 86 | |
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[5650ebf] | 87 | def clone(self): |
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| 88 | """ Return a identical copy of self """ |
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| 89 | return self._clone([PYTHONCLASS]()) |
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[fe9c19b4] | 90 | |
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[af03ddd] | 91 | |
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[79ac6f8] | 92 | def run(self, x=0.0): |
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| 93 | """ |
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| 94 | Evaluate the model |
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| 95 | |
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| 96 | :param x: input q, or [q,phi] |
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| 97 | |
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| 98 | :return: scattering function P(q) |
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| 99 | |
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[af03ddd] | 100 | """ |
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| 101 | |
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| 102 | return [CPYTHONCLASS].run(self, x) |
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| 103 | |
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[79ac6f8] | 104 | def runXY(self, x=0.0): |
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| 105 | """ |
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| 106 | Evaluate the model in cartesian coordinates |
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| 107 | |
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| 108 | :param x: input q, or [qx, qy] |
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| 109 | |
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| 110 | :return: scattering function P(q) |
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| 111 | |
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[af03ddd] | 112 | """ |
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| 113 | |
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| 114 | return [CPYTHONCLASS].runXY(self, x) |
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| 115 | |
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[79ac6f8] | 116 | def evalDistribution(self, x=[]): |
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| 117 | """ |
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| 118 | Evaluate the model in cartesian coordinates |
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| 119 | |
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| 120 | :param x: input q[], or [qx[], qy[]] |
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| 121 | |
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| 122 | :return: scattering function P(q[]) |
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| 123 | |
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[5b56b7a] | 124 | """ |
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[f9a1279] | 125 | return [CPYTHONCLASS].evalDistribution(self, x) |
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[5b56b7a] | 126 | |
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[5eb9154] | 127 | def calculate_ER(self): |
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[79ac6f8] | 128 | """ |
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| 129 | Calculate the effective radius for P(q)*S(q) |
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| 130 | |
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| 131 | :return: the value of the effective radius |
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| 132 | |
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[5eb9154] | 133 | """ |
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| 134 | return [CPYTHONCLASS].calculate_ER(self) |
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| 135 | |
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[e08bd5b] | 136 | def calculate_VR(self): |
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| 137 | """ |
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| 138 | Calculate the volf ratio for P(q)*S(q) |
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| 139 | |
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| 140 | :return: the value of the volf ratio |
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| 141 | |
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| 142 | """ |
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| 143 | return [CPYTHONCLASS].calculate_VR(self) |
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| 144 | |
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[af03ddd] | 145 | def set_dispersion(self, parameter, dispersion): |
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| 146 | """ |
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[79ac6f8] | 147 | Set the dispersion object for a model parameter |
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| 148 | |
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| 149 | :param parameter: name of the parameter [string] |
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| 150 | :param dispersion: dispersion object of type DispersionModel |
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| 151 | |
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[af03ddd] | 152 | """ |
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| 153 | return [CPYTHONCLASS].set_dispersion(self, parameter, dispersion.cdisp) |
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| 154 | |
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| 155 | |
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| 156 | # End of file |
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