1 | /** |
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2 | * Scattering model classes |
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3 | * |
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4 | */ |
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5 | |
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6 | #include <math.h> |
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7 | #include "parameters.hh" |
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8 | #include <stdio.h> |
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9 | using namespace std; |
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10 | #include "coresecondmoment.h" |
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11 | |
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12 | static double core_secondmoment_kernel(double dp[], double q) { |
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13 | //fit parameters |
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14 | double scale = dp[0]; |
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15 | double density_poly = dp[1]; |
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16 | double sld_poly = dp[2]; |
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17 | double radius_core = dp[3]; |
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18 | double volf_cores = dp[4]; |
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19 | double ads_amount = dp[5]; |
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20 | double second_moment = dp[6]; |
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21 | double sld_solv = dp[7]; |
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22 | double background = dp[8]; |
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23 | // Not valid for very small r |
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24 | if (radius_core < 0.001){ |
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25 | return 0.0; |
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26 | } |
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27 | //others |
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28 | double form_factor = 0.0; |
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29 | double x_val = 0.0; |
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30 | //Pi |
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31 | double pi = 4.0 * atan(1.0); |
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32 | //relative sld |
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33 | double contrast = sld_poly - sld_solv; |
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34 | //x for exp |
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35 | x_val = q*second_moment; |
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36 | x_val *= x_val; |
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37 | //computation |
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38 | form_factor = contrast * ads_amount; |
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39 | form_factor /= (q * density_poly); |
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40 | form_factor *= form_factor; |
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41 | form_factor *= (6.0 * pi * volf_cores * 1.0e+10); |
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42 | form_factor /= radius_core; |
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43 | form_factor *= exp(-x_val); |
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44 | |
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45 | // scale and background |
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46 | form_factor *= scale; |
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47 | form_factor += background; |
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48 | return (form_factor); |
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49 | } |
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50 | |
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51 | Core2ndMomentModel :: Core2ndMomentModel() { |
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52 | scale = Parameter(1.0); |
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53 | density_poly = Parameter(0.7); |
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54 | sld_poly = Parameter(1.5e-6); |
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55 | radius_core = Parameter(500.0, true); |
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56 | radius_core.set_min(0.0); |
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57 | volf_cores = Parameter(0.14); |
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58 | ads_amount = Parameter(1.9); |
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59 | second_moment = Parameter(23.0); |
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60 | sld_solv = Parameter(6.3e-6); |
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61 | background = Parameter(0.0); |
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62 | } |
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63 | |
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64 | /** |
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65 | * Function to evaluate 1D scattering function |
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66 | * @param q: q-value |
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67 | * @return: function value |
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68 | */ |
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69 | double Core2ndMomentModel :: operator()(double q) { |
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70 | double dp[9]; |
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71 | |
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72 | // Add the background after averaging |
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73 | dp[0] = scale(); |
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74 | dp[1] = density_poly(); |
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75 | dp[2] = sld_poly(); |
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76 | dp[3] = radius_core(); |
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77 | dp[4] = volf_cores(); |
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78 | dp[5] = ads_amount(); |
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79 | dp[6] = second_moment(); |
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80 | dp[7] = sld_solv(); |
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81 | dp[8] = 0.0; |
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82 | |
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83 | // Get the dispersion points for the radius |
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84 | vector<WeightPoint> weights_rad; |
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85 | radius_core.get_weights(weights_rad); |
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86 | |
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87 | // Perform the computation, with all weight points |
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88 | double sum = 0.0; |
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89 | double norm = 0.0; |
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90 | |
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91 | // Loop over radius weight points |
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92 | for(size_t i=0; i<weights_rad.size(); i++) { |
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93 | dp[3] = weights_rad[i].value; |
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94 | //weighted sum |
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95 | sum += weights_rad[i].weight |
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96 | * core_secondmoment_kernel(dp, q); |
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97 | norm += weights_rad[i].weight; |
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98 | } |
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99 | return sum/norm + background(); |
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100 | } |
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101 | |
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102 | /** |
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103 | * Function to evaluate 2D scattering function |
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104 | * @param q_x: value of Q along x |
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105 | * @param q_y: value of Q along y |
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106 | * @return: function value |
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107 | */ |
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108 | double Core2ndMomentModel :: operator()(double qx, double qy) { |
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109 | double q = sqrt(qx*qx + qy*qy); |
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110 | return (*this).operator()(q); |
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111 | } |
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112 | |
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113 | /** |
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114 | * Function to evaluate 2D scattering function |
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115 | * @param pars: parameters of the sphere |
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116 | * @param q: q-value |
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117 | * @param phi: angle phi |
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118 | * @return: function value |
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119 | */ |
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120 | double Core2ndMomentModel :: evaluate_rphi(double q, double phi) { |
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121 | return (*this).operator()(q); |
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122 | } |
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123 | |
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124 | /** |
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125 | * Function to calculate effective radius |
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126 | * @return: effective radius value |
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127 | */ |
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128 | double Core2ndMomentModel :: calculate_ER() { |
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129 | return 0.0; |
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130 | } |
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131 | double Core2ndMomentModel :: calculate_VR() { |
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132 | return 1.0; |
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133 | } |
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