[2c4b289] | 1 | /** |
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| 2 | This software was developed by the University of Tennessee as part of the |
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| 3 | Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
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| 4 | project funded by the US National Science Foundation. |
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| 5 | |
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| 6 | If you use DANSE applications to do scientific research that leads to |
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| 7 | publication, we ask that you acknowledge the use of the software with the |
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| 8 | following sentence: |
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| 9 | |
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| 10 | "This work benefited from DANSE software developed under NSF award DMR-0520547." |
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| 11 | |
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| 12 | copyright 2008, University of Tennessee |
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| 13 | */ |
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| 14 | |
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| 15 | /** |
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| 16 | * Scattering model classes |
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| 17 | * The classes use the IGOR library found in |
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| 18 | * sansmodels/src/libigor |
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| 19 | * |
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| 20 | */ |
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| 21 | |
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| 22 | #include <math.h> |
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| 23 | #include "parameters.hh" |
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| 24 | #include <stdio.h> |
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| 25 | using namespace std; |
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| 26 | |
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| 27 | extern "C" { |
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| 28 | #include "libSphere.h" |
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| 29 | } |
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| 30 | |
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[82c11d3] | 31 | class BinaryHSPSF11Model{ |
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| 32 | public: |
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| 33 | // Model parameters |
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| 34 | Parameter l_radius; |
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| 35 | Parameter s_radius; |
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| 36 | Parameter vol_frac_ls; |
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| 37 | Parameter vol_frac_ss; |
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| 38 | Parameter ls_sld; |
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| 39 | Parameter ss_sld; |
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| 40 | Parameter solvent_sld; |
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| 41 | Parameter background; |
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| 42 | |
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| 43 | //Constructor |
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| 44 | BinaryHSPSF11Model(); |
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| 45 | |
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| 46 | //Operators to get I(Q) |
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| 47 | double operator()(double q); |
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| 48 | double operator()(double qx , double qy); |
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| 49 | double calculate_ER(); |
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[e08bd5b] | 50 | double calculate_VR(); |
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[82c11d3] | 51 | double evaluate_rphi(double q, double phi); |
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| 52 | }; |
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| 53 | |
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[2c4b289] | 54 | BinaryHSPSF11Model :: BinaryHSPSF11Model() { |
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[9188cc1] | 55 | |
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[2c4b289] | 56 | l_radius = Parameter(160.0, true); |
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| 57 | l_radius.set_min(0.0); |
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| 58 | s_radius = Parameter(25.0, true); |
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| 59 | s_radius.set_min(0.0); |
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| 60 | vol_frac_ls = Parameter(0.2); |
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| 61 | vol_frac_ss = Parameter(0.1); |
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| 62 | ls_sld = Parameter(3.5e-6); |
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| 63 | ss_sld = Parameter(5e-7); |
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| 64 | solvent_sld = Parameter(6.36e-6); |
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| 65 | background = Parameter(0.0); |
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| 66 | } |
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| 67 | |
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| 68 | /** |
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| 69 | * Function to evaluate 1D scattering function |
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| 70 | * The NIST IGOR library is used for the actual calculation. |
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| 71 | * @param q: q-value |
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| 72 | * @return: function value |
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| 73 | */ |
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| 74 | double BinaryHSPSF11Model :: operator()(double q) { |
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| 75 | double dp[8]; |
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| 76 | |
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| 77 | // Fill parameter array for IGOR library |
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| 78 | // Add the background after averaging |
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| 79 | dp[0] = l_radius(); |
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| 80 | dp[1] = s_radius(); |
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| 81 | dp[2] = vol_frac_ls(); |
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| 82 | dp[3] = vol_frac_ss(); |
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| 83 | dp[4] = ls_sld(); |
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| 84 | dp[5] = ss_sld(); |
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| 85 | dp[6] = solvent_sld(); |
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[9188cc1] | 86 | dp[7] = 0.0; |
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| 87 | |
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[2c4b289] | 88 | |
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| 89 | // Get the dispersion points for the large radius |
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| 90 | vector<WeightPoint> weights_l_radius; |
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| 91 | l_radius.get_weights(weights_l_radius); |
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| 92 | |
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| 93 | // Get the dispersion points for the small radius |
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| 94 | vector<WeightPoint> weights_s_radius; |
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| 95 | s_radius.get_weights(weights_s_radius); |
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| 96 | |
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| 97 | // Perform the computation, with all weight points |
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| 98 | double sum = 0.0; |
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| 99 | double norm = 0.0; |
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| 100 | |
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| 101 | // Loop over larger radius weight points |
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| 102 | for(int i=0; i< (int)weights_l_radius.size(); i++) { |
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| 103 | dp[0] = weights_l_radius[i].value; |
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[9188cc1] | 104 | |
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[2c4b289] | 105 | // Loop over small radius weight points |
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| 106 | for(int j=0; j< (int)weights_s_radius.size(); j++) { |
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| 107 | dp[1] = weights_s_radius[j].value; |
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| 108 | |
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| 109 | |
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| 110 | sum += weights_l_radius[i].weight *weights_s_radius[j].weight * BinaryHS_PSF11(dp, q); |
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| 111 | norm += weights_l_radius[i].weight *weights_s_radius[j].weight; |
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| 112 | } |
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| 113 | } |
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| 114 | return sum/norm + background(); |
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| 115 | } |
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| 116 | |
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| 117 | /** |
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| 118 | * Function to evaluate 2D scattering function |
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| 119 | * @param q_x: value of Q along x |
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| 120 | * @param q_y: value of Q along y |
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| 121 | * @return: function value |
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| 122 | */ |
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| 123 | double BinaryHSPSF11Model :: operator()(double qx, double qy) { |
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| 124 | double q = sqrt(qx*qx + qy*qy); |
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| 125 | return (*this).operator()(q); |
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| 126 | } |
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| 127 | |
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| 128 | /** |
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| 129 | * Function to evaluate 2D scattering function |
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| 130 | * @param pars: parameters of the vesicle |
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| 131 | * @param q: q-value |
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| 132 | * @param phi: angle phi |
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| 133 | * @return: function value |
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| 134 | */ |
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| 135 | double BinaryHSPSF11Model :: evaluate_rphi(double q, double phi) { |
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| 136 | return (*this).operator()(q); |
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| 137 | } |
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[5eb9154] | 138 | /** |
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| 139 | * Function to calculate effective radius |
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| 140 | * @return: effective radius value |
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| 141 | */ |
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| 142 | double BinaryHSPSF11Model :: calculate_ER() { |
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| 143 | //NOT implemented yet!!! |
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[34c2649] | 144 | return 0.0; |
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[5eb9154] | 145 | } |
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[e08bd5b] | 146 | double BinaryHSPSF11Model :: calculate_VR() { |
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| 147 | return 1.0; |
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| 148 | } |
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