[0da4eba] | 1 | |
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| 2 | /* |
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| 3 | This software was developed by the University of Tennessee as part of the |
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| 4 | Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
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| 5 | project funded by the US National Science Foundation. |
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| 6 | |
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| 7 | If you use DANSE applications to do scientific research that leads to |
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| 8 | publication, we ask that you acknowledge the use of the software with the |
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| 9 | following sentence: |
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| 10 | |
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| 11 | "This work benefited from DANSE software developed under NSF award DMR-0520547." |
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| 12 | |
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| 13 | copyright 2008, University of Tennessee |
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| 14 | |
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| 15 | SHIBAYAMA-GEISSLER TWO-LENGTH SCALE SCATTERING FUNCTION FOR GELS |
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| 16 | |
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| 17 | See Sibayama, Tanaka & Han, J Chem Phys, (1992), 97(9), 6829-6841 |
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| 18 | or Mallam, Horkay, Hecht, Rennie & Geissler, Macromol, (1991), 24, 543 |
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| 19 | |
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| 20 | Ported to C++ from Fortran by Robert Whitley (2012) |
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| 21 | */ |
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| 22 | |
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| 23 | #include <math.h> |
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| 24 | #include "parameters.hh" |
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| 25 | #include <stdio.h> |
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| 26 | using namespace std; |
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| 27 | #include "GelFit.h" |
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| 28 | |
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[325bc4a] | 29 | GelFitModel::GelFitModel() |
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[0da4eba] | 30 | { |
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| 31 | lScale = Parameter(3.5); |
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| 32 | gScale = Parameter(1.7); |
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| 33 | zeta = Parameter(16.0); |
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| 34 | radius = Parameter(104.0,true); |
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| 35 | radius.set_min(2.0); |
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| 36 | scale = Parameter(2.0,true); |
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| 37 | background = Parameter(0.01); |
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| 38 | } |
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| 39 | |
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[325bc4a] | 40 | double GelFitModel::operator()(double q) |
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[0da4eba] | 41 | { |
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| 42 | double dp[3]; |
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| 43 | dp[0] = zeta(); |
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| 44 | dp[1] = radius(); |
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| 45 | dp[2] = scale(); |
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| 46 | |
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| 47 | if (dp[2] <= 0) |
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| 48 | { |
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| 49 | //cout << "\n\nThe Scaling Exponent must be > 0"; |
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| 50 | //cout << "\nWill set to 2.0"; |
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| 51 | dp[2] = 2.0; |
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| 52 | } |
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| 53 | |
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| 54 | // Lorentzian Term |
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| 55 | ////////////////////////double a(x[i]*x[i]*zeta*zeta); |
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| 56 | double a(q*q*dp[0]*dp[0]); |
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| 57 | double b(1.0 + (((dp[2] + 1.0)/3.0)*a) ); |
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| 58 | double c(pow(b, (dp[2]/2.0) ) ); |
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| 59 | |
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| 60 | // Exponential Term |
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| 61 | ////////////////////////double d(x[i]*x[i]*rg*rg); |
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| 62 | double d(q*q*dp[1]*dp[1]); |
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| 63 | double e(-1.0*(d/3.0) ); |
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| 64 | double f(exp(e)); |
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| 65 | |
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| 66 | // Scattering Law |
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[325bc4a] | 67 | double result((lScale()/c) + (gScale()*f) + background()); |
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| 68 | return result; |
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[0da4eba] | 69 | } |
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| 70 | |
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| 71 | |
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| 72 | /** |
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| 73 | * Function to evaluate 2D scattering function |
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| 74 | * @param q_x: value of Q along x |
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| 75 | * @param q_y: value of Q along y |
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| 76 | * @return: function value |
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| 77 | */ |
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[325bc4a] | 78 | double GelFitModel::operator()(double qx, double qy) |
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[0da4eba] | 79 | { |
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| 80 | double q = sqrt(qx*qx + qy*qy); |
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| 81 | return (*this).operator()(q); |
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| 82 | } |
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| 83 | |
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| 84 | /** |
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| 85 | * Function to evaluate 2D scattering function |
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| 86 | * @param pars: parameters of the cylinder |
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| 87 | * @param q: q-value |
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| 88 | * @param phi: angle phi |
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| 89 | * @return: function value |
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| 90 | */ |
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[325bc4a] | 91 | double GelFitModel::evaluate_rphi(double q, double phi) |
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[0da4eba] | 92 | { |
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| 93 | double qx = q*cos(phi); |
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| 94 | double qy = q*sin(phi); |
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| 95 | return (*this).operator()(qx, qy); |
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| 96 | } |
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| 97 | /** |
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| 98 | * Function to calculate effective radius |
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| 99 | * @return: effective radius value |
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| 100 | */ |
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[325bc4a] | 101 | double GelFitModel::calculate_ER() |
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[0da4eba] | 102 | { |
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| 103 | //NOT implemented yet!!! |
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| 104 | return 0.0; |
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| 105 | } |
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[325bc4a] | 106 | double GelFitModel::calculate_VR() |
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[0da4eba] | 107 | { |
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| 108 | return 1.0; |
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| 109 | } |
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