source: sasview/sansmodels/setup.py @ 299dc45

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Last change on this file since 299dc45 was 3e7d161, checked in by Jae Cho <jhjcho@…>, 13 years ago

move setup to top folder
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1"""
2 Installation script for SANS models
3
4  - To compile and install:
5      python setup.py install
6  - To create distribution:
7      python setup.py bdist_wininst
8  - To create odb files:
9      python setup.py odb
10
11"""
12import sys
13import os
14if len(sys.argv) == 1:
15    sys.argv.append('install')
16   
17from numpy.distutils.misc_util import get_numpy_include_dirs
18numpy_incl_path = os.path.join(get_numpy_include_dirs()[0], "numpy")
19
20def createODBcontent(class_name):
21    """
22        Return the content of the Pyre odb file for a given class
23        @param class_name: Name of the class to write an odb file for [string]
24        @return: content of the file [string]
25    """
26    content  = "\"\"\"\n"
27    content += "  Facility for SANS model\n\n"
28    content += "  WARNING: THIS FILE WAS AUTOGENERATED AT INSTALL TIME\n"
29    content += "           DO NOT MODIFY\n\n"
30    content += "  This code was written as part of the DANSE project\n"
31    content += "  http://danse.us/trac/sans/\n"
32    content += "  @copyright 2007:"
33    content += "  SANS/DANSE Group (University of Tennessee), for the DANSE project\n\n"
34    content += "\"\"\"\n"
35    content += "def model():\n"
36    content += "    from ScatteringIntensityFactory import ScatteringIntensityFactory\n"
37    content += "    from sans.models.%s import %s\n" % (class_name, class_name)
38    content += "    return ScatteringIntensityFactory(%s)('%s')\n"\
39                 % (class_name, class_name)
40
41    return content
42
43def createODBfiles():
44    """
45       Create odb files for all available models
46    """
47    from sans.models.ModelFactory import ModelFactory
48   
49    class_list = ModelFactory().getAllModels()
50    for name in class_list:
51        odb = open("sans/models/pyre/%s.odb" % name, 'w')
52        odb.write(createODBcontent(name))
53        odb.close()
54        print "sans/models/pyre/%s.odb created" % name
55       
56#
57# Proceed with installation
58#
59
60# First, create the odb files
61if len(sys.argv) > 1 and sys.argv[1].lower() == 'odb':
62    print "Creating odb files"
63    try:
64        createODBfiles()
65    except:   
66        print "ERROR: could not create odb files"
67        print sys.exc_value
68    sys.exit()
69
70# Then build and install the modules
71from distutils.core import Extension, setup
72#from setuptools import setup#, find_packages
73
74# Build the module name
75srcdir  = "sans/models/c_extensions"
76igordir = "sans/models/libigor"
77
78print "Installing SANS models"
79
80
81dist = setup(
82    name="sans.models",
83    version = "0.9.1",
84    description = "Python module for SANS scattering models",
85    author = "SANS/DANSE",
86    author_email = "sansdanse@gmail.gov",
87    url = "http://danse.us/trac/sans",
88   
89    # Place this module under the sans package
90    #ext_package = "sans",
91   
92    # Use the pure python modules
93    package_dir = {"sans.models.sans_extension":"sans/models/c_extensions",
94                  },
95    package_data={'sans.models': [os.path.join('media', "*")]},
96    packages = ["sans","sans.models",
97                "sans.models.sans_extension","sans.models.pyre",],
98   
99    ext_modules = [ Extension("sans.models.sans_extension.c_models",
100     sources = [
101        "sans/models/c_models/c_models.cpp",
102        #srcdir+"/CSphereModel.c",
103        #srcdir+"/sphere.c",
104        "sans/models/c_models/CSphereModel.cpp",
105        "sans/models/c_models/CPearlNecklaceModel.cpp",
106        "sans/models/c_models/pearlnecklace.cpp",
107        srcdir+"/pearlnecklace.c",
108        "sans/models/c_models/COnionModel.cpp",
109        "sans/models/c_models/onion.cpp",
110        srcdir+"/onion.c",
111        "sans/models/c_models/CReflModel.cpp",
112        "sans/models/c_models/refl.cpp",
113        srcdir+"/refl.c",
114        "sans/models/c_models/CReflAdvModel.cpp",
115        "sans/models/c_models/refl_adv.cpp",
116        srcdir+"/refl_adv.c",
117        #srcdir+"/SquareWell.c",
118        "sans/models/c_models/CSquareWellStructure.cpp", 
119        "sans/models/c_models/SquareWell.cpp", 
120        #srcdir+"/StickyHS.c",         
121        "sans/models/c_models/CStickyHSStructure.cpp", 
122        "sans/models/c_models/StickyHS.cpp",             
123        "sans/models/c_models/CHardsphereStructure.cpp", 
124        "sans/models/c_models/Hardsphere.cpp",   
125        #srcdir+"/DiamCyl.c",         
126        "sans/models/c_models/CDiamCylFunc.cpp", 
127        "sans/models/c_models/DiamCyl.cpp",   
128        #srcdir+"/DiamEllip.c",         
129        "sans/models/c_models/CDiamEllipFunc.cpp", 
130        "sans/models/c_models/DiamEllip.cpp",     
131        #srcdir+"/HayterMSA.c",         
132        "sans/models/c_models/CHayterMSAStructure.cpp", 
133        "sans/models/c_models/HayterMSA.cpp",             
134        "sans/models/c_models/sphere.cpp",
135        srcdir+"/fuzzysphere.c",
136        "sans/models/c_models/CFuzzySphereModel.cpp",
137        "sans/models/c_models/fuzzysphere.cpp",
138        #srcdir+"/CCylinderModel.c",
139        "sans/models/c_models/CCylinderModel.cpp",
140        "sans/models/c_models/cylinder.cpp",
141        "sans/models/c_models/parameters.cpp",
142        "sans/models/c_models/dispersion_visitor.cpp",
143        srcdir+"/cylinder.c",
144        #srcdir+"/CParallelepiped.c",
145        "sans/models/c_models/CParallelepipedModel.cpp",
146        "sans/models/c_models/parallelepiped.cpp",
147        srcdir+"/parallelepiped.c",
148        "sans/models/c_models/CCSParallelepipedModel.cpp",
149        "sans/models/c_models/csparallelepiped.cpp",
150        srcdir+"/csparallelepiped.c",
151        #srcdir+"/CCoreShellCylinderModel.c",
152        "sans/models/c_models/CCoreShellCylinderModel.cpp",
153        "sans/models/c_models/coreshellcylinder.cpp",
154        srcdir+"/core_shell_cylinder.c",
155        #srcdir+"/CHollowCylinderModel.c",
156        "sans/models/c_models/CHollowCylinderModel.cpp",
157        "sans/models/c_models/hollowcylinder.cpp",
158        srcdir+"/hollow_cylinder.c",
159        #srcdir+"/CCoreShellModel.c",
160        #srcdir+"/core_shell.c",
161        "sans/models/c_models/CCoreShellModel.cpp",
162        "sans/models/c_models/coreshellsphere.cpp",
163        #srcdir+"/CEllipsoidModel.c",
164        "sans/models/c_models/CEllipsoidModel.cpp",
165        "sans/models/c_models/ellipsoid.cpp",       
166        srcdir+"/ellipsoid.c",
167        "sans/models/c_models/CCoreFourShellModel.cpp",
168        "sans/models/c_models/corefourshell.cpp",
169        #srcdir+"/corefourshell.c",
170        #srcdir+"/CEllipticalCylinderModel.c",
171        "sans/models/c_models/CEllipticalCylinderModel.cpp",
172        "sans/models/c_models/ellipticalcylinder.cpp",               
173        srcdir+"/elliptical_cylinder.c",
174        #srcdir+"/CTriaxialEllipsoidModel.c",
175        "sans/models/c_models/CTriaxialEllipsoidModel.cpp",
176        "sans/models/c_models/triaxialellipsoid.cpp",               
177        srcdir+"/triaxial_ellipsoid.c",
178        #srcdir+"/CFlexibleCylinderModel.c",
179        "sans/models/c_models/CFlexibleCylinderModel.cpp",
180        "sans/models/c_models/flexiblecylinder.cpp",               
181        srcdir+"/flexible_cylinder.c",
182        "sans/models/c_models/CFlexCylEllipXModel.cpp",
183        "sans/models/c_models/flexcyl_ellipX.cpp",         
184        srcdir+"/flexcyl_ellipX.c",
185        "sans/models/c_models/CBarBellModel.cpp",
186        "sans/models/c_models/barbell.cpp",         
187        srcdir+"/barbell.c",
188        "sans/models/c_models/CCappedCylinderModel.cpp",
189        "sans/models/c_models/capcyl.cpp",         
190        srcdir+"/capcyl.c",
191        #srcdir+"/CStakedDisksModel.c",
192        "sans/models/c_models/CSCCrystalModel.cpp",
193        "sans/models/c_models/sc.cpp",               
194        srcdir+"/sc.c",
195        "sans/models/c_models/CFCCrystalModel.cpp",
196        "sans/models/c_models/fcc.cpp",               
197        srcdir+"/fcc.c",
198        "sans/models/c_models/CBCCrystalModel.cpp",
199        "sans/models/c_models/bcc.cpp",               
200        srcdir+"/bcc.c",
201        "sans/models/c_models/CStackedDisksModel.cpp",
202        "sans/models/c_models/stackeddisks.cpp",               
203        srcdir+"/stacked_disks.c",
204        #srcdir+"/CLamellarModel.c",
205        "sans/models/c_models/CLamellarModel.cpp",
206        "sans/models/c_models/lamellar.cpp",               
207        srcdir+"/lamellar.c",
208        #srcdir+"/CLamellarFFHGModel.c",
209        "sans/models/c_models/CLamellarFFHGModel.cpp",
210        "sans/models/c_models/lamellarFF_HG.cpp",               
211        #srcdir+"/lamellarFF_HG.c",
212        #srcdir+"/CLamellarPSModel.c",
213        "sans/models/c_models/CLamellarPSModel.cpp",
214        "sans/models/c_models/lamellarPS.cpp",               
215        srcdir+"/lamellarPS.c",
216        #srcdir+"/CLamellarPSHGModel.c",
217        "sans/models/c_models/CLamellarPSHGModel.cpp",
218        "sans/models/c_models/lamellarPS_HG.cpp",               
219        #srcdir+"/lamellarPS_HG.c",
220        "sans/models/c_models/CLamellarPCrystalModel.cpp",
221        "sans/models/c_models/lamellarPC.cpp",               
222        #srcdir+"/lamellarPC.c",
223        #srcdir+"/COblateModel.c",
224        "sans/models/c_models/CCoreShellEllipsoidModel.cpp",
225        "sans/models/c_models/spheroid.cpp",   
226        srcdir+"/spheroid.c",             
227        #srcdir+"/COblateModel.c",
228        #"sans/models/c_models/COblateModel.cpp",
229        #"sans/models/c_models/oblate.cpp",               
230        #srcdir+"/oblate.c",
231        #srcdir+"/CProlateModel.c",
232        #"sans/models/c_models/CProlateModel.cpp",
233        #"sans/models/c_models/prolate.cpp",               
234        #srcdir+"/prolate.c",
235        #srcdir+"/CMultishellModel.c",
236        "sans/models/c_models/CMultiShellModel.cpp",
237        "sans/models/c_models/multishell.cpp",               
238        #srcdir+"/multishell.c",
239        "sans/models/c_models/CSphereSLDModel.cpp",
240        "sans/models/c_models/spheresld.cpp",               
241        srcdir+"/spheresld.c",
242        #srcdir+"/CVesicleModel.c",
243        "sans/models/c_models/CVesicleModel.cpp",
244        "sans/models/c_models/vesicle.cpp",               
245        #srcdir+"/vesicle.c",
246        #srcdir+"/CBinaryHSModel.c",
247        "sans/models/c_models/CBinaryHSModel.cpp",
248        "sans/models/c_models/binaryHS.cpp",               
249        "sans/models/c_models/CPoly_GaussCoil.cpp",
250        "sans/models/c_models/polygausscoil.cpp",   
251        srcdir+"/rpa.c",             
252        "sans/models/c_models/CRPAModel.cpp",
253        "sans/models/c_models/rpa.cpp", 
254        #srcdir+"/fractal.c",             
255        "sans/models/c_models/CFractalModel.cpp",
256        "sans/models/c_models/fractal.cpp", 
257        srcdir+"/sld_cal.c",         
258        "sans/models/c_models/CSLDCalFunc.cpp", 
259        "sans/models/c_models/sld_cal.cpp", 
260        #gammainc function need to imported from somewhere 
261        #srcdir+"/polyexclvol.c",             
262        #"sans/models/c_models/CPolymerExclVolModel.cpp",
263        #"sans/models/c_models/polyexclvol.cpp", 
264        srcdir+"/libmultifunc/librefl.c",
265        srcdir+"/libmultifunc/libfunc.c",
266        #srcdir+"/polygausscoil.c",             
267        #srcdir+"/binaryHS.c",
268        srcdir+"/disperser.c",
269        igordir+"/libCylinder.c",
270        igordir+"/libStructureFactor.c",
271        igordir+"/libSphere.c",
272        igordir+"/libTwoPhase.c",
273        srcdir+"/gaussian.c",
274        srcdir+"/CGaussian.c",
275        srcdir+"/logNormal.c",
276        srcdir+"/CLogNormal.c",
277        srcdir+"/schulz.c",
278        srcdir+"/CSchulz.c",
279        srcdir+"/lorentzian.c",
280        srcdir+"/CLorentzian.c"
281            ],
282        include_dirs=[igordir,srcdir,"sans/models/c_models",numpy_incl_path]),       
283        # Smearer extension
284        Extension("sans.models.sans_extension.smearer",
285                   sources = [
286        "sans/models/c_smearer/smearer_module.cpp",
287        "sans/models/c_smearer/smearer.cpp",
288        ],
289        include_dirs=["sans/models/c_smearer",numpy_incl_path]),
290        Extension("sans.models.sans_extension.smearer2d_helper",
291                  sources = [
292        "sans/models/c_smearer/smearer2d_helper_module.cpp",
293        "sans/models/c_smearer/smearer2d_helper.cpp",
294        ],
295        include_dirs=["sans/models/c_smearer",numpy_incl_path]
296        )
297        ]
298    )
299       
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