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59  <div class="section" id="dispersemodel">
60<h1>DisperseModel<a class="headerlink" href="#dispersemodel" title="Permalink to this headline">¶</a></h1>
61<div class="section" id="sans-models-dispersemodel">
62<h2><a class="reference internal" href="#module-sans.models.DisperseModel" title="sans.models.DisperseModel"><tt class="xref py py-mod docutils literal"><span class="pre">sans.models.DisperseModel</span></tt></a><a class="headerlink" href="#sans-models-dispersemodel" title="Permalink to this headline">¶</a></h2>
63<span class="target" id="module-sans.models.DisperseModel"></span><p>Wrapper for the Disperser class extension</p>
64<table class="docutils field-list" frame="void" rules="none">
65<col class="field-name" />
66<col class="field-body" />
67<tbody valign="top">
68<tr class="field-odd field"><th class="field-name">author:</th><td class="field-body">Mathieu Doucet / UTK</td>
69</tr>
70<tr class="field-even field"><th class="field-name">contact:</th><td class="field-body"><a class="reference external" href="mailto:mathieu&#46;doucet&#37;&#52;&#48;nist&#46;gov">mathieu<span>&#46;</span>doucet<span>&#64;</span>nist<span>&#46;</span>gov</a></td>
71</tr>
72</tbody>
73</table>
74<dl class="class">
75<dt id="sans.models.DisperseModel.DisperseModel">
76<em class="property">class </em><tt class="descclassname">sans.models.DisperseModel.</tt><tt class="descname">DisperseModel</tt><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel" title="Permalink to this definition">¶</a></dt>
77<dd><p>Bases: <tt class="xref py py-class docutils literal"><span class="pre">Disperser</span></tt>, <a class="reference internal" href="BaseComponent.html#sans.models.BaseComponent.BaseComponent" title="sans.models.BaseComponent.BaseComponent"><tt class="xref py py-class docutils literal"><span class="pre">sans.models.BaseComponent.BaseComponent</span></tt></a></p>
78<p>Wrapper class for the Disperser extension
79Python class that takes a model and averages its output
80for a distribution of its parameters.</p>
81<p>The parameters to be varied are specified at instantiation time.
82The distributions are Gaussian, with std deviations specified for
83each parameter at instantiation time.</p>
84<p>Example:</p>
85<div class="highlight-python"><div class="highlight"><pre><span class="n">cyl</span> <span class="o">=</span> <span class="n">ModelFactory</span><span class="p">()</span><span class="o">.</span><span class="n">getModel</span><span class="p">(</span><span class="s">&quot;CylinderModel&quot;</span><span class="p">)</span>
86<span class="n">disp</span> <span class="o">=</span> <span class="n">DisperseModel</span><span class="p">(</span><span class="n">cyl</span><span class="p">,</span> <span class="p">[</span><span class="s">&#39;cyl_phi&#39;</span><span class="p">],</span> <span class="p">[</span><span class="mf">0.3</span><span class="p">])</span>
87<span class="n">disp</span><span class="o">.</span><span class="n">run</span><span class="p">([</span><span class="mf">0.01</span><span class="p">,</span> <span class="mf">1.57</span><span class="p">])</span>
88</pre></div>
89</div>
90<dl class="method">
91<dt id="sans.models.DisperseModel.DisperseModel.__add__">
92<tt class="descname">__add__</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.__add__" title="Permalink to this definition">¶</a></dt>
93<dd></dd></dl>
94
95<dl class="attribute">
96<dt id="sans.models.DisperseModel.DisperseModel.__class__">
97<tt class="descname">__class__</tt><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.__class__" title="Permalink to this definition">¶</a></dt>
98<dd><p>alias of <tt class="xref py py-class docutils literal"><span class="pre">type</span></tt></p>
99</dd></dl>
100
101<dl class="attribute">
102<dt id="sans.models.DisperseModel.DisperseModel.__delattr__">
103<tt class="descname">__delattr__</tt><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.__delattr__" title="Permalink to this definition">¶</a></dt>
104<dd><p>x.__delattr__(&#8216;name&#8217;) &lt;==&gt; del x.name</p>
105</dd></dl>
106
107<dl class="attribute">
108<dt id="sans.models.DisperseModel.DisperseModel.__dict__">
109<tt class="descname">__dict__</tt><em class="property"> = &lt;dictproxy object at 0x0200CEB0&gt;</em><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.__dict__" title="Permalink to this definition">¶</a></dt>
110<dd></dd></dl>
111
112<dl class="method">
113<dt id="sans.models.DisperseModel.DisperseModel.__div__">
114<tt class="descname">__div__</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.__div__" title="Permalink to this definition">¶</a></dt>
115<dd></dd></dl>
116
117<dl class="attribute">
118<dt id="sans.models.DisperseModel.DisperseModel.__getattribute__">
119<tt class="descname">__getattribute__</tt><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.__getattribute__" title="Permalink to this definition">¶</a></dt>
120<dd><p>x.__getattribute__(&#8216;name&#8217;) &lt;==&gt; x.name</p>
121</dd></dl>
122
123<dl class="attribute">
124<dt id="sans.models.DisperseModel.DisperseModel.__hash__">
125<tt class="descname">__hash__</tt><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.__hash__" title="Permalink to this definition">¶</a></dt>
126<dd><p>x.__hash__() &lt;==&gt; hash(x)</p>
127</dd></dl>
128
129<dl class="method">
130<dt id="sans.models.DisperseModel.DisperseModel.__init__">
131<tt class="descname">__init__</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.__init__" title="Permalink to this definition">¶</a></dt>
132<dd><p>Initialization</p>
133<table class="docutils field-list" frame="void" rules="none">
134<col class="field-name" />
135<col class="field-body" />
136<tbody valign="top">
137<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
138<li><strong>model</strong> &#8211; Model to disperse [BaseComponent]</li>
139<li><strong>paramList</strong> &#8211; list of parameters to disperse [List of strings]</li>
140<li><strong>sigmaList</strong> &#8211; list of std deviations for Gaussian dispersion
141[List of floats]</li>
142</ul>
143</td>
144</tr>
145</tbody>
146</table>
147</dd></dl>
148
149<dl class="attribute">
150<dt id="sans.models.DisperseModel.DisperseModel.__module__">
151<tt class="descname">__module__</tt><em class="property"> = 'sans.models.DisperseModel'</em><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.__module__" title="Permalink to this definition">¶</a></dt>
152<dd></dd></dl>
153
154<dl class="method">
155<dt id="sans.models.DisperseModel.DisperseModel.__mul__">
156<tt class="descname">__mul__</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.__mul__" title="Permalink to this definition">¶</a></dt>
157<dd></dd></dl>
158
159<dl class="staticmethod">
160<dt id="sans.models.DisperseModel.DisperseModel.__new__">
161<em class="property">static </em><tt class="descname">__new__</tt><big>(</big><em>S</em>, <em>...</em><big>)</big> &rarr; a new object with type S, a subtype of T<a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.__new__" title="Permalink to this definition">¶</a></dt>
162<dd></dd></dl>
163
164<dl class="method">
165<dt id="sans.models.DisperseModel.DisperseModel.__reduce__">
166<tt class="descname">__reduce__</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.__reduce__" title="Permalink to this definition">¶</a></dt>
167<dd><p>helper for pickle</p>
168</dd></dl>
169
170<dl class="method">
171<dt id="sans.models.DisperseModel.DisperseModel.__reduce_ex__">
172<tt class="descname">__reduce_ex__</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.__reduce_ex__" title="Permalink to this definition">¶</a></dt>
173<dd><p>helper for pickle</p>
174</dd></dl>
175
176<dl class="attribute">
177<dt id="sans.models.DisperseModel.DisperseModel.__repr__">
178<tt class="descname">__repr__</tt><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.__repr__" title="Permalink to this definition">¶</a></dt>
179<dd><p>x.__repr__() &lt;==&gt; repr(x)</p>
180</dd></dl>
181
182<dl class="attribute">
183<dt id="sans.models.DisperseModel.DisperseModel.__setattr__">
184<tt class="descname">__setattr__</tt><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.__setattr__" title="Permalink to this definition">¶</a></dt>
185<dd><p>x.__setattr__(&#8216;name&#8217;, value) &lt;==&gt; x.name = value</p>
186</dd></dl>
187
188<dl class="attribute">
189<dt id="sans.models.DisperseModel.DisperseModel.__str__">
190<tt class="descname">__str__</tt><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.__str__" title="Permalink to this definition">¶</a></dt>
191<dd><p>x.__str__() &lt;==&gt; str(x)</p>
192</dd></dl>
193
194<dl class="method">
195<dt id="sans.models.DisperseModel.DisperseModel.__sub__">
196<tt class="descname">__sub__</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.__sub__" title="Permalink to this definition">¶</a></dt>
197<dd></dd></dl>
198
199<dl class="attribute">
200<dt id="sans.models.DisperseModel.DisperseModel.__weakref__">
201<tt class="descname">__weakref__</tt><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.__weakref__" title="Permalink to this definition">¶</a></dt>
202<dd><p>list of weak references to the object (if defined)</p>
203</dd></dl>
204
205<dl class="method">
206<dt id="sans.models.DisperseModel.DisperseModel._clone">
207<tt class="descname">_clone</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel._clone" title="Permalink to this definition">¶</a></dt>
208<dd><p>Internal utility function to copy the internal
209data members to a fresh copy.</p>
210</dd></dl>
211
212<dl class="method">
213<dt id="sans.models.DisperseModel.DisperseModel.calculate_ER">
214<tt class="descname">calculate_ER</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.calculate_ER" title="Permalink to this definition">¶</a></dt>
215<dd></dd></dl>
216
217<dl class="method">
218<dt id="sans.models.DisperseModel.DisperseModel.clone">
219<tt class="descname">clone</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.clone" title="Permalink to this definition">¶</a></dt>
220<dd><p>Return a identical copy of self</p>
221</dd></dl>
222
223<dl class="method">
224<dt id="sans.models.DisperseModel.DisperseModel.evalDistribution">
225<tt class="descname">evalDistribution</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.evalDistribution" title="Permalink to this definition">¶</a></dt>
226<dd><p>Evaluate a distribution of q-values.</p>
227<ul>
228<li><p class="first">For 1D, a numpy array is expected as input:</p>
229<blockquote>
230<div><p>evalDistribution(q)</p>
231</div></blockquote>
232</li>
233</ul>
234<p>where q is a numpy array.</p>
235<ul class="simple">
236<li>For 2D, a list of numpy arrays are expected: [qx_prime,qy_prime],
237where 1D arrays,</li>
238</ul>
239<p>qx_prime = [ qx[0], qx[1], qx[2], ....]
240and
241qy_prime = [ qy[0], qy[1], qy[2], ....]</p>
242<p>Then get
243q = numpy.sqrt(qx_prime^2+qy_prime^2)</p>
244<p>that is a qr in 1D array;
245q = [q[0], q[1], q[2], ....]</p>
246<table class="docutils field-list" frame="void" rules="none">
247<col class="field-name" />
248<col class="field-body" />
249<tbody valign="top">
250<tr class="field-odd field"><th class="field-name">Note :</th><td class="field-body"><p class="first">Due to 2D speed issue, no anisotropic scattering
251is supported for python models, thus C-models should have</p>
252<blockquote class="last">
253<div><p>their own evalDistribution methods.</p>
254</div></blockquote>
255</td>
256</tr>
257</tbody>
258</table>
259<p>The method is then called the following way:</p>
260<p>evalDistribution(q)
261where q is a numpy array.</p>
262<table class="docutils field-list" frame="void" rules="none">
263<col class="field-name" />
264<col class="field-body" />
265<tbody valign="top">
266<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>qdist</strong> &#8211; ndarray of scalar q-values or list [qx,qy]
267where qx,qy are 1D ndarrays</td>
268</tr>
269</tbody>
270</table>
271</dd></dl>
272
273<dl class="method">
274<dt id="sans.models.DisperseModel.DisperseModel.getDispParamList">
275<tt class="descname">getDispParamList</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.getDispParamList" title="Permalink to this definition">¶</a></dt>
276<dd><p>Return a list of all available parameters for the model</p>
277</dd></dl>
278
279<dl class="method">
280<dt id="sans.models.DisperseModel.DisperseModel.getParam">
281<tt class="descname">getParam</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.getParam" title="Permalink to this definition">¶</a></dt>
282<dd></dd></dl>
283
284<dl class="method">
285<dt id="sans.models.DisperseModel.DisperseModel.getParamList">
286<tt class="descname">getParamList</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.getParamList" title="Permalink to this definition">¶</a></dt>
287<dd><p>Return a list of all available parameters for the model</p>
288</dd></dl>
289
290<dl class="method">
291<dt id="sans.models.DisperseModel.DisperseModel.getParamListWithToken">
292<tt class="descname">getParamListWithToken</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.getParamListWithToken" title="Permalink to this definition">¶</a></dt>
293<dd></dd></dl>
294
295<dl class="method">
296<dt id="sans.models.DisperseModel.DisperseModel.getParamWithToken">
297<tt class="descname">getParamWithToken</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.getParamWithToken" title="Permalink to this definition">¶</a></dt>
298<dd></dd></dl>
299
300<dl class="method">
301<dt id="sans.models.DisperseModel.DisperseModel.is_fittable">
302<tt class="descname">is_fittable</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.is_fittable" title="Permalink to this definition">¶</a></dt>
303<dd><p>Check if a given parameter is fittable or not</p>
304<table class="docutils field-list" frame="void" rules="none">
305<col class="field-name" />
306<col class="field-body" />
307<tbody valign="top">
308<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>par_name</strong> &#8211; the parameter name to check</td>
309</tr>
310</tbody>
311</table>
312</dd></dl>
313
314<dl class="attribute">
315<dt id="sans.models.DisperseModel.DisperseModel.model">
316<tt class="descname">model</tt><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.model" title="Permalink to this definition">¶</a></dt>
317<dd><p>Model to disperse</p>
318</dd></dl>
319
320<dl class="attribute">
321<dt id="sans.models.DisperseModel.DisperseModel.params">
322<tt class="descname">params</tt><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.params" title="Permalink to this definition">¶</a></dt>
323<dd><p>Parameters</p>
324</dd></dl>
325
326<dl class="method">
327<dt id="sans.models.DisperseModel.DisperseModel.run">
328<tt class="descname">run</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.run" title="Permalink to this definition">¶</a></dt>
329<dd><p>Evaluate the model</p>
330<table class="docutils field-list" frame="void" rules="none">
331<col class="field-name" />
332<col class="field-body" />
333<tbody valign="top">
334<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>x</strong> &#8211; input q, or [q,phi]</td>
335</tr>
336<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body">scattering function P(q)</td>
337</tr>
338</tbody>
339</table>
340</dd></dl>
341
342<dl class="method">
343<dt id="sans.models.DisperseModel.DisperseModel.runXY">
344<tt class="descname">runXY</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.runXY" title="Permalink to this definition">¶</a></dt>
345<dd><p>Evaluate the model</p>
346<table class="docutils field-list" frame="void" rules="none">
347<col class="field-name" />
348<col class="field-body" />
349<tbody valign="top">
350<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>x</strong> &#8211; input q, or [q,phi]</td>
351</tr>
352<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body">scattering function P(q)</td>
353</tr>
354</tbody>
355</table>
356</dd></dl>
357
358<dl class="method">
359<dt id="sans.models.DisperseModel.DisperseModel.setParam">
360<tt class="descname">setParam</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.setParam" title="Permalink to this definition">¶</a></dt>
361<dd></dd></dl>
362
363<dl class="method">
364<dt id="sans.models.DisperseModel.DisperseModel.setParamWithToken">
365<tt class="descname">setParamWithToken</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.models.DisperseModel.DisperseModel.setParamWithToken" title="Permalink to this definition">¶</a></dt>
366<dd></dd></dl>
367
368</dd></dl>
369
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381<li><a class="reference internal" href="#">DisperseModel</a><ul>
382<li><a class="reference internal" href="#sans-models-dispersemodel"><tt class="docutils literal"><span class="pre">sans.models.DisperseModel</span></tt></a></li>
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