1 | """ |
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2 | Class that manages what is being displayed on the 1D plot |
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3 | of a SANS modeling application |
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4 | |
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5 | TODO: Eliminate the code to re-read the data in menu_Simple and Menu_Guinier. |
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6 | Modify the way you store and handle the data in Data1D |
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7 | |
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8 | TODO: use only one menu entry for "Toggle between Q and Q**2 scale" instead |
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9 | of have one menu entry for Q and one menu entry for Q**2. |
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10 | You want to be consistent in the way you present options for the x-axis |
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11 | and y-axis. |
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12 | |
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13 | """ |
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14 | |
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15 | import wx |
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16 | import wx.lib.newevent |
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17 | |
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18 | (FunctionParamEvent, EVT_FUNC_PARS) = wx.lib.newevent.NewEvent() |
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19 | |
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20 | from PlotPanel import PlotPanel |
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21 | import numpy, pylab |
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22 | from plottables import Plottable, Graph |
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23 | import os |
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24 | import math |
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25 | from scipy import optimize |
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26 | |
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27 | |
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28 | |
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29 | DEFAULT_QMIN = 0 |
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30 | DEFAULT_QMAX = 0.05 |
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31 | DEFAULT_QSTEP = 0.001 |
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32 | |
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33 | |
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34 | class Data1D(Plottable): |
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35 | """Data plottable: scatter plot of x,y with errors in x and y. |
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36 | """ |
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37 | |
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38 | def __init__(self,x,y,dx=None,dy=None): |
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39 | """Draw points specified by x[i],y[i] in the current color/symbol. |
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40 | Uncertainty in x is given by dx[i], or by (xlo[i],xhi[i]) if the |
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41 | uncertainty is asymmetric. Similarly for y uncertainty. |
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42 | |
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43 | The title appears on the legend. |
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44 | The label, if it is different, appears on the status bar. |
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45 | """ |
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46 | self.name = "DATA" |
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47 | self.x = x |
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48 | self.y = y |
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49 | self.dx = dx |
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50 | self.dy = dy |
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51 | self.hidden = False |
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52 | |
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53 | |
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54 | |
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55 | def render(self,plot,**kw): |
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56 | plot.curve(self.x,self.y,dy=self.dy,**kw) |
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57 | |
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58 | def changed(self): |
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59 | return False |
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60 | |
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61 | @classmethod |
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62 | def labels(cls, collection): |
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63 | """Build a label mostly unique within a collection""" |
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64 | map = {} |
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65 | for item in collection: |
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66 | map[item] = r"$\rm{%s}$" % item.name |
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67 | return map |
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68 | |
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69 | |
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70 | class ModelPanel1D(PlotPanel): |
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71 | def __init__(self, parent, id = -1, color = None,\ |
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72 | dpi = None, style = wx.NO_FULL_REPAINT_ON_RESIZE, **kwargs): |
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73 | PlotPanel.__init__(self, parent, id = id, style = style, **kwargs) |
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74 | |
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75 | self.parent = parent |
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76 | self.qmin = DEFAULT_QMIN |
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77 | self.qmax = DEFAULT_QMAX |
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78 | self.qstep = DEFAULT_QSTEP |
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79 | |
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80 | self.figure.subplots_adjust(bottom=.25) |
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81 | |
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82 | self.set_yscale('log') |
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83 | self.set_xscale('linear') |
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84 | self.x = pylab.arange(self.qmin, self.qmax+self.qstep*0.01, self.qstep) |
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85 | # Error on x |
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86 | self.dx = numpy.zeros(len(self.x)) |
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87 | # Intensity values |
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88 | y = numpy.ones(len(self.x)) |
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89 | # Error on y |
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90 | self.dy = numpy.zeros(len(self.x)) |
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91 | |
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92 | # Plottables |
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93 | self.file_data = Data1D(x=[], y=[], dx=[], dy=[]) |
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94 | self.file_data.name = "Loaded 1D data" |
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95 | |
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96 | self.t = pylab.arange(0.0, 10, 1) |
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97 | self.r = [0,3,2,4.5,6,1,2,4,7,9] |
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98 | self.file_data1 = Data1D(x=self.t, y=[], dx=self.r, dy=self.r) |
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99 | |
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100 | # Graph |
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101 | self.graph = Graph() |
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102 | self.graph.xaxis('\\rm{q} ', 'A^{-1}') |
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103 | self.graph.yaxis("\\rm{Intensity} ","cm^{-1}") |
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104 | self.graph.add(self.file_data) |
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105 | #self.graph.add(self.file_data1) |
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106 | self.graph.render(self) |
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107 | |
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108 | |
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109 | # Bind events |
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110 | self.parent.Bind(EVT_FUNC_PARS, self._onEVT_FUNC_PARS) |
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111 | |
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112 | def onSave1DData(self, evt): |
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113 | """ |
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114 | Saves the date in a file |
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115 | @param evt: wx event |
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116 | """ |
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117 | path = None |
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118 | dlg = wx.FileDialog(self, "Choose a file", os.getcwd(), "", "*.txt", wx.SAVE) |
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119 | if dlg.ShowModal() == wx.ID_OK: |
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120 | path = dlg.GetPath() |
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121 | mypath = os.path.basename(path) |
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122 | print path |
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123 | dlg.Destroy() |
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124 | if not path == None: |
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125 | |
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126 | out = open(path, 'w') |
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127 | out.write("<q> <I_1D>\n") |
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128 | for i in range(len(self.file_data.x)): |
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129 | out.write("%g %g\n" % (self.file_data.x[i], self.file_data.y[i])) |
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130 | out.close() |
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131 | |
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132 | def onContextMenu(self, event): |
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133 | """ |
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134 | Pop up a context menu |
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135 | """ |
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136 | # Slicer plot popup menu |
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137 | slicerpop = wx.Menu() |
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138 | slicerpop.Append(314, "&Save 1D model points (%s)" % self.file_data.name, |
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139 | 'Save randomly oriented data currently displayed') |
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140 | |
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141 | slicerpop.Append(316, '&Load 1D data file') |
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142 | slicerpop.Append(321, '&Display Error') |
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143 | slicerpop.AppendSeparator() |
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144 | # Those labels were wrong. The way you coded it, it's note necessarily log(I)! |
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145 | slicerpop.Append(315, '&Toggle Linear/Log intensity scale Y-axis') |
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146 | slicerpop.Append(319, '&Plot Q') |
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147 | slicerpop.Append(317, '&Plot Q**2') |
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148 | slicerpop.Append(320, '&Plot log(Q)') |
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149 | |
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150 | wx.EVT_MENU(self, 314, self.onSave1DData) |
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151 | wx.EVT_MENU(self, 315, self._onToggleScale) |
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152 | wx.EVT_MENU(self, 316, self._onLoad1DData) |
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153 | |
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154 | wx.EVT_MENU(self, 319, self._onLinearQ) |
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155 | wx.EVT_MENU(self, 317, self._onSquaredQ) |
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156 | wx.EVT_MENU(self, 320, self._onLogQ) |
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157 | wx.EVT_MENU(self, 321, self._onError) |
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158 | pos = event.GetPosition() |
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159 | pos = self.ScreenToClient(pos) |
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160 | self.PopupMenu(slicerpop, pos) |
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161 | |
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162 | def _onError(self, event): |
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163 | print self.file_data1.dx |
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164 | a,b,c=self.points(x=self.file_data1.x, y=self.file_data1.y, \ |
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165 | dx=self.file_data1.dx , dy=self.file_data1.dy) |
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166 | |
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167 | self.graph.add(b) |
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168 | #self.graph.add(c) |
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169 | self.graph.render(self) |
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170 | self.subplot.figure.canvas.draw_idle() |
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171 | def _onFit(self,event): |
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172 | print "the SansFit goes here" |
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173 | |
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174 | def _onEVT_FUNC_PARS(self, event): |
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175 | """ |
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176 | Plot x * cstA + cstB |
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177 | """ |
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178 | a=event.cstA |
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179 | b=event.cstB |
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180 | temp=[] |
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181 | |
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182 | if self.file_data.x: |
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183 | for x_i in self.file_data.x: |
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184 | temp.append(Line_function(x_i,a,b)) |
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185 | self.file_data1.y =temp |
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186 | self.file_data1.x= self.file_data.x |
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187 | else: |
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188 | |
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189 | for x_i in self.file_data1.x: |
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190 | temp.append(Line_function(x_i,a,b)) |
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191 | self.file_data1.y =temp |
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192 | |
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193 | self.file_data1.name = "Loaded 1D data" |
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194 | self.graph.xaxis('\\rm{q} ', 'A^{-1}') |
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195 | self.graph.yaxis("\\rm{Intensity} ","cm^{-1}") |
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196 | self.graph.add(self.file_data1) |
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197 | self.graph.render(self) |
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198 | self.subplot.figure.canvas.draw_idle() |
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199 | |
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200 | def _onLoad1DData(self, event): |
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201 | """ |
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202 | Load a data file |
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203 | """ |
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204 | path = None |
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205 | dlg = wx.FileDialog(self, "Choose a file", os.getcwd(), "", "*.txt", wx.OPEN) |
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206 | if dlg.ShowModal() == wx.ID_OK: |
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207 | path = dlg.GetPath() |
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208 | mypath = os.path.basename(path) |
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209 | dlg.Destroy() |
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210 | |
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211 | file_x = [] |
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212 | file_y = [] |
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213 | if not path == None: |
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214 | self.path =path |
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215 | input_f = open(path,'r') |
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216 | buff = input_f.read() |
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217 | lines = buff.split('\n') |
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218 | for line in lines: |
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219 | try: |
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220 | toks = line.split() |
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221 | x = float(toks[0]) |
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222 | y = float(toks[1]) |
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223 | file_x.append(x) |
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224 | file_y.append(y) |
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225 | except: |
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226 | print "READ ERROR", line |
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227 | |
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228 | self.file_data.x = file_x |
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229 | self.file_data.y = file_y |
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230 | |
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231 | self.file_data.name = "Loaded 1D data" |
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232 | self.graph.xaxis('\\rm{q} ', 'A^{-1}') |
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233 | self.graph.yaxis("\\rm{Intensity} ","cm^{-1}") |
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234 | |
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235 | self.graph.add(self.file_data) |
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236 | self.graph.render(self) |
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237 | self.subplot.figure.canvas.draw_idle() |
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238 | |
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239 | def onMenuGuinier(self, event): |
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240 | """ |
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241 | This method plot I vs Q**2 |
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242 | """ |
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243 | file_x =[] |
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244 | for entry in self.file_data.x: |
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245 | file_x.append(entry * entry) |
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246 | self.file_data.x = file_x |
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247 | self.graph.xaxis('\\rm{q**2 } ', 'A^{-2}') |
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248 | |
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249 | def _onSquaredQ(self, event): |
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250 | """ |
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251 | This method plots Q**2 |
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252 | """ |
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253 | self.graph.xaxis('\\rm{q}^2 ', 'A^{-2}') |
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254 | self.set_xscale('squared') |
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255 | |
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256 | self.graph.render(self) |
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257 | self.subplot.figure.canvas.draw_idle() |
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258 | |
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259 | def _onLinearQ(self, event): |
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260 | """ |
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261 | This method plots Q |
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262 | """ |
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263 | self.graph.xaxis('\\rm{q} ', 'A^{-1}') |
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264 | self.set_xscale('linear') |
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265 | |
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266 | self.graph.render(self) |
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267 | self.subplot.figure.canvas.draw_idle() |
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268 | |
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269 | def _onToggleScale(self, event): |
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270 | """ |
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271 | Toggle the scale of the y-axis |
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272 | """ |
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273 | if self.get_yscale() == 'log': |
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274 | self.set_yscale('linear') |
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275 | else: |
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276 | self.set_yscale('log') |
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277 | self.subplot.figure.canvas.draw_idle() |
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278 | |
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279 | def _onLogQ(self, event): |
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280 | """ |
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281 | Plot log(q) |
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282 | """ |
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283 | self.set_xscale('log') |
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284 | self.graph.xaxis('\\rm{q} ', 'A^{-1}') |
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285 | |
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286 | self.graph.render(self) |
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287 | self.subplot.figure.canvas.draw_idle() |
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288 | |
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289 | |
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290 | def Line_function(x, paramA, paramB): |
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291 | """ |
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292 | linear function |
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293 | """ |
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294 | return x * paramA + paramB |
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