[a00ee4c] | 1 | |
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[7116b6e0] | 2 | ################################################################################ |
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| 3 | #This software was developed by the University of Tennessee as part of the |
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| 4 | #Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
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| 5 | #project funded by the US National Science Foundation. |
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| 6 | # |
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| 7 | #See the license text in license.txt |
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| 8 | # |
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| 9 | #copyright 2009, University of Tennessee |
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| 10 | ################################################################################ |
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[a00ee4c] | 11 | |
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| 12 | """ |
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[7116b6e0] | 13 | Dialog panel to explore the P(r) inversion results for a range |
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| 14 | of D_max value. User picks a number of points and a range of |
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| 15 | distances, then can toggle between inversion outputs and see |
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| 16 | their distribution as a function of D_max. |
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| 17 | """ |
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| 18 | |
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| 19 | |
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[a00ee4c] | 20 | import wx |
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| 21 | import numpy |
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| 22 | import math |
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| 23 | import logging |
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[3b865c1] | 24 | import sys |
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[a00ee4c] | 25 | |
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| 26 | # Avoid Matplotlib complaining about the lack of legend on the plot |
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| 27 | import warnings |
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| 28 | warnings.simplefilter("ignore") |
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| 29 | |
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| 30 | # Import plotting classes |
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| 31 | from danse.common.plottools.PlotPanel import PlotPanel |
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| 32 | from danse.common.plottools import Theory1D as Model1D |
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| 33 | from danse.common.plottools.plottables import Graph |
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| 34 | |
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[9ff861b] | 35 | from pr_widgets import PrTextCtrl |
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| 36 | |
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[a00ee4c] | 37 | # Default number of points on the output plot |
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| 38 | DEFAULT_NPTS = 10 |
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| 39 | # Default output parameter to plot |
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| 40 | DEFAULT_OUTPUT = 'Chi2/dof' |
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| 41 | |
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| 42 | class OutputPlot(PlotPanel): |
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| 43 | """ |
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[7116b6e0] | 44 | Plot panel used to show the selected results as a function |
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| 45 | of D_max |
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[a00ee4c] | 46 | """ |
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| 47 | def __init__(self, d_min, d_max, parent, id = -1, color = None,\ |
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| 48 | dpi = None, style = wx.NO_FULL_REPAINT_ON_RESIZE, **kwargs): |
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| 49 | """ |
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[7116b6e0] | 50 | Initialization. The parameters added to PlotPanel are: |
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| 51 | |
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| 52 | :param d_min: Minimum value of D_max to explore |
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| 53 | :param d_max: Maximum value of D_max to explore |
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| 54 | |
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[a00ee4c] | 55 | """ |
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| 56 | PlotPanel.__init__(self, parent, id = id, style = style, **kwargs) |
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| 57 | |
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| 58 | self.parent = parent |
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| 59 | self.min = d_min |
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| 60 | self.max = d_max |
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| 61 | self.npts = DEFAULT_NPTS |
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| 62 | |
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| 63 | step = (self.max-self.min)/(self.npts-1) |
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| 64 | self.x = numpy.arange(self.min, self.max+step*0.01, step) |
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| 65 | dx = numpy.zeros(len(self.x)) |
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| 66 | y = numpy.ones(len(self.x)) |
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| 67 | dy = numpy.zeros(len(self.x)) |
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| 68 | |
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| 69 | # Plot area |
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| 70 | self.plot = Model1D(self.x,y=y,dy=dy) |
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| 71 | self.plot.name = DEFAULT_OUTPUT |
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| 72 | |
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| 73 | # Graph |
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| 74 | self.graph = Graph() |
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| 75 | self.graph.xaxis("\\rm{D_{max}}", 'A') |
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| 76 | self.graph.yaxis("\\rm{%s}" % DEFAULT_OUTPUT,"") |
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| 77 | self.graph.add(self.plot) |
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| 78 | self.graph.render(self) |
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| 79 | |
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| 80 | def onContextMenu(self, event): |
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| 81 | """ |
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[7116b6e0] | 82 | Default context menu for the plot panel |
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| 83 | |
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| 84 | :TODO: Would be nice to add printing and log/linear scales. |
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[a00ee4c] | 85 | The current verison of plottools no longer plays well with |
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| 86 | plots outside of guiframe. Guiframe team needs to fix this. |
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| 87 | """ |
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| 88 | # Slicer plot popup menu |
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| 89 | id = wx.NewId() |
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| 90 | slicerpop = wx.Menu() |
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| 91 | slicerpop.Append(id,'&Save image', 'Save image as PNG') |
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| 92 | wx.EVT_MENU(self, id, self.onSaveImage) |
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| 93 | |
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| 94 | id = wx.NewId() |
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| 95 | slicerpop.AppendSeparator() |
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| 96 | slicerpop.Append(id, '&Reset Graph') |
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| 97 | wx.EVT_MENU(self, id, self.onResetGraph) |
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| 98 | |
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| 99 | pos = event.GetPosition() |
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| 100 | pos = self.ScreenToClient(pos) |
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| 101 | self.PopupMenu(slicerpop, pos) |
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| 102 | |
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| 103 | class Results: |
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| 104 | """ |
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[7116b6e0] | 105 | Class to hold the inversion output parameters |
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| 106 | as a function of D_max |
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[a00ee4c] | 107 | """ |
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| 108 | def __init__(self): |
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| 109 | """ |
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[7116b6e0] | 110 | Initialization. Create empty arrays |
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| 111 | and dictionary of labels. |
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[a00ee4c] | 112 | """ |
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| 113 | # Array of output for each inversion |
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| 114 | self.chi2 = [] |
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| 115 | self.osc = [] |
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| 116 | self.pos = [] |
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| 117 | self.pos_err = [] |
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| 118 | self.rg = [] |
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| 119 | self.iq0 = [] |
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| 120 | self.bck = [] |
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| 121 | self.d_max = [] |
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| 122 | |
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| 123 | # Dictionary of outputs |
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| 124 | self.outputs = {} |
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| 125 | self.outputs['Chi2/dof'] = ["\chi^2/dof", "a.u.", self.chi2] |
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| 126 | self.outputs['Oscillation parameter'] = ["Osc", "a.u.", self.osc] |
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| 127 | self.outputs['Positive fraction'] = ["P^+", "a.u.", self.pos] |
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| 128 | self.outputs['1-sigma positive fraction'] = ["P^+_{1\ \sigma}", "a.u.", self.pos_err] |
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| 129 | self.outputs['Rg'] = ["R_g", "A", self.rg] |
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| 130 | self.outputs['I(q=0)'] = ["I(q=0)", "1/A", self.iq0] |
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| 131 | self.outputs['Background'] = ["Bck", "1/A", self.bck] |
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| 132 | |
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| 133 | class ExploreDialog(wx.Dialog): |
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| 134 | """ |
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[7116b6e0] | 135 | The explorer dialog box. This dialog is meant to be |
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| 136 | invoked by the InversionControl class. |
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[a00ee4c] | 137 | """ |
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| 138 | |
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| 139 | def __init__(self, pr_state, nfunc, *args, **kwds): |
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| 140 | """ |
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[7116b6e0] | 141 | Initialization. The parameters added to Dialog are: |
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| 142 | |
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| 143 | :param pr_state: sans.pr.invertor.Invertor object |
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| 144 | :param nfunc: Number of terms in the expansion |
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| 145 | |
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[a00ee4c] | 146 | """ |
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| 147 | kwds["style"] = wx.RESIZE_BORDER|wx.DEFAULT_DIALOG_STYLE |
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| 148 | wx.Dialog.__init__(self, *args, **kwds) |
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| 149 | |
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| 150 | # Initialize Results object |
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| 151 | self.results = Results() |
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| 152 | |
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| 153 | self.pr_state = pr_state |
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| 154 | self._default_min = 0.9*self.pr_state.d_max |
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| 155 | self._default_max = 1.1*self.pr_state.d_max |
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| 156 | self.nfunc = nfunc |
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| 157 | |
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| 158 | # Control for number of points |
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[9ff861b] | 159 | self.npts_ctl = PrTextCtrl(self, -1, style=wx.TE_PROCESS_ENTER, size=(60,20)) |
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[a00ee4c] | 160 | # Control for the minimum value of D_max |
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[9ff861b] | 161 | self.dmin_ctl = PrTextCtrl(self, -1, style=wx.TE_PROCESS_ENTER, size=(60,20)) |
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[a00ee4c] | 162 | # Control for the maximum value of D_max |
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[9ff861b] | 163 | self.dmax_ctl = PrTextCtrl(self, -1, style=wx.TE_PROCESS_ENTER, size=(60,20)) |
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[a00ee4c] | 164 | |
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| 165 | # Output selection box for the y axis |
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| 166 | self.output_box = None |
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| 167 | |
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| 168 | # Create the plot object |
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| 169 | self.plotpanel = OutputPlot(self._default_min, self._default_max, self, -1, style=wx.RAISED_BORDER) |
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| 170 | |
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| 171 | # Create the layout of the dialog |
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| 172 | self.__do_layout() |
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| 173 | self.Fit() |
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| 174 | |
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| 175 | # Calculate exploration results |
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| 176 | self._recalc() |
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| 177 | # Graph the default output curve |
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[164c7d0] | 178 | self._plot_output() |
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[a00ee4c] | 179 | |
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| 180 | class Event: |
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| 181 | """ |
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[7116b6e0] | 182 | Class that holds the content of the form |
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[a00ee4c] | 183 | """ |
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| 184 | ## Number of points to be plotted |
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| 185 | npts = 0 |
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| 186 | ## Minimum value of D_max |
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| 187 | dmin = 0 |
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| 188 | ## Maximum value of D_max |
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| 189 | dmax = 0 |
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| 190 | |
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[164c7d0] | 191 | def _get_values(self, event=None): |
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[a00ee4c] | 192 | """ |
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[7116b6e0] | 193 | Invoked when the user changes a value of the form. |
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| 194 | Check that the values are of the right type. |
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| 195 | |
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| 196 | :return: ExploreDialog.Event object if the content is good, |
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| 197 | None otherwise |
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[a00ee4c] | 198 | """ |
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| 199 | # Flag to make sure that all values are good |
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| 200 | flag = True |
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| 201 | |
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| 202 | # Empty ExploreDialog.Event content |
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| 203 | content_event = self.Event() |
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| 204 | |
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| 205 | # Read each text control and make sure the type is valid |
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| 206 | # Let the user know if a type is invalid by changing the |
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| 207 | # background color of the control. |
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| 208 | try: |
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| 209 | content_event.npts = int(self.npts_ctl.GetValue()) |
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| 210 | self.npts_ctl.SetBackgroundColour(wx.WHITE) |
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| 211 | self.npts_ctl.Refresh() |
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| 212 | except: |
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| 213 | flag = False |
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| 214 | self.npts_ctl.SetBackgroundColour("pink") |
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| 215 | self.npts_ctl.Refresh() |
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| 216 | |
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| 217 | try: |
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| 218 | content_event.dmin = float(self.dmin_ctl.GetValue()) |
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| 219 | self.dmin_ctl.SetBackgroundColour(wx.WHITE) |
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| 220 | self.dmin_ctl.Refresh() |
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| 221 | except: |
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| 222 | flag = False |
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| 223 | self.dmin_ctl.SetBackgroundColour("pink") |
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| 224 | self.dmin_ctl.Refresh() |
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| 225 | |
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| 226 | try: |
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| 227 | content_event.dmax = float(self.dmax_ctl.GetValue()) |
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| 228 | self.dmax_ctl.SetBackgroundColour(wx.WHITE) |
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| 229 | self.dmax_ctl.Refresh() |
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| 230 | except: |
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| 231 | flag = False |
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| 232 | self.dmax_ctl.SetBackgroundColour("pink") |
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| 233 | self.dmax_ctl.Refresh() |
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| 234 | |
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| 235 | # If the content of the form is valid, return the content, |
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| 236 | # otherwise return None |
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| 237 | if flag: |
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[164c7d0] | 238 | if event is not None: |
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| 239 | event.Skip(True) |
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[a00ee4c] | 240 | return content_event |
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| 241 | else: |
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| 242 | return None |
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| 243 | |
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| 244 | def _plot_output(self, event=None): |
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| 245 | """ |
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[7116b6e0] | 246 | Invoked when a new output type is selected for plotting, |
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| 247 | or when a new computation is finished. |
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[a00ee4c] | 248 | """ |
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| 249 | # Get the output type selection |
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| 250 | output_type = self.output_box.GetString(self.output_box.GetSelection()) |
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| 251 | |
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| 252 | # If the selected output type is part of the results ojbect, |
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| 253 | # display the results. |
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| 254 | # Note: by design, the output type should always be part of the |
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| 255 | # results object. |
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| 256 | if self.results.outputs.has_key(output_type): |
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| 257 | self.plotpanel.plot.x = self.results.d_max |
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| 258 | self.plotpanel.plot.y = self.results.outputs[output_type][2] |
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| 259 | self.plotpanel.plot.name = '_nolegend_' |
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| 260 | self.plotpanel.graph.yaxis("\\rm{%s}" % self.results.outputs[output_type][0], self.results.outputs[output_type][1]) |
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| 261 | |
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| 262 | # Redraw |
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| 263 | self.plotpanel.graph.render(self.plotpanel) |
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| 264 | self.plotpanel.subplot.figure.canvas.draw_idle() |
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| 265 | else: |
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| 266 | msg = "ExploreDialog: the Results object's dictionary does not contain " |
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| 267 | msg += "the [%s] output type. This must be indicative of a change in the " % str(output_type) |
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| 268 | msg += "ExploreDialog code." |
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| 269 | logging.error(msg) |
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| 270 | |
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| 271 | def __do_layout(self): |
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| 272 | """ |
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[7116b6e0] | 273 | Do the layout of the dialog |
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[a00ee4c] | 274 | """ |
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| 275 | # Dialog box properties |
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| 276 | self.SetTitle("D_max Explorer") |
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| 277 | self.SetSize((600, 595)) |
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| 278 | |
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| 279 | sizer_main = wx.BoxSizer(wx.VERTICAL) |
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| 280 | sizer_button = wx.BoxSizer(wx.HORIZONTAL) |
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| 281 | sizer_params = wx.GridBagSizer(5,5) |
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| 282 | |
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| 283 | iy = 0 |
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| 284 | ix = 0 |
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| 285 | label_npts = wx.StaticText(self, -1, "Npts") |
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| 286 | sizer_params.Add(label_npts, (iy,ix), (1,1), wx.LEFT|wx.EXPAND|wx.ADJUST_MINSIZE, 15) |
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| 287 | ix += 1 |
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| 288 | sizer_params.Add(self.npts_ctl, (iy,ix), (1,1), wx.EXPAND|wx.ADJUST_MINSIZE, 0) |
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| 289 | self.npts_ctl.SetValue("%g" % DEFAULT_NPTS) |
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[164c7d0] | 290 | self.npts_ctl.Bind(wx.EVT_KILL_FOCUS, self._recalc) |
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[a00ee4c] | 291 | |
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| 292 | ix += 1 |
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| 293 | label_dmin = wx.StaticText(self, -1, "Min Distance [A]") |
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| 294 | sizer_params.Add(label_dmin, (iy,ix), (1,1), wx.LEFT|wx.EXPAND|wx.ADJUST_MINSIZE, 15) |
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| 295 | ix += 1 |
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| 296 | sizer_params.Add(self.dmin_ctl, (iy,ix), (1,1), wx.EXPAND|wx.ADJUST_MINSIZE, 0) |
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| 297 | self.dmin_ctl.SetValue(str(self._default_min)) |
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[164c7d0] | 298 | self.dmin_ctl.Bind(wx.EVT_KILL_FOCUS, self._recalc) |
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[a00ee4c] | 299 | |
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| 300 | ix += 1 |
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| 301 | label_dmax = wx.StaticText(self, -1, "Max Distance [A]") |
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| 302 | sizer_params.Add(label_dmax, (iy,ix), (1,1), wx.LEFT|wx.EXPAND|wx.ADJUST_MINSIZE, 15) |
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| 303 | ix += 1 |
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| 304 | sizer_params.Add(self.dmax_ctl, (iy,ix), (1,1), wx.EXPAND|wx.ADJUST_MINSIZE, 0) |
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| 305 | self.dmax_ctl.SetValue(str(self._default_max)) |
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[164c7d0] | 306 | self.dmax_ctl.Bind(wx.EVT_KILL_FOCUS, self._recalc) |
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[a00ee4c] | 307 | |
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| 308 | |
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| 309 | # Ouput selection box |
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| 310 | selection_msg = wx.StaticText(self, -1, "Select a dependent variable:") |
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| 311 | self.output_box = wx.ComboBox(self, -1) |
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| 312 | for item in self.results.outputs.keys(): |
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| 313 | self.output_box.Append(item, "") |
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| 314 | self.output_box.SetStringSelection(DEFAULT_OUTPUT) |
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| 315 | |
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| 316 | output_sizer = wx.GridBagSizer(5,5) |
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| 317 | output_sizer.Add(selection_msg, (0,0), (1,1), wx.LEFT|wx.EXPAND|wx.ADJUST_MINSIZE, 10) |
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| 318 | output_sizer.Add(self.output_box, (0,1), (1,2), wx.LEFT|wx.EXPAND|wx.ADJUST_MINSIZE, 10) |
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| 319 | |
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| 320 | wx.EVT_COMBOBOX(self.output_box,-1, self._plot_output) |
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| 321 | sizer_main.Add(output_sizer, 0, wx.EXPAND | wx.ALL, 10) |
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| 322 | |
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| 323 | sizer_main.Add(self.plotpanel, 0, wx.EXPAND | wx.ALL, 10) |
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| 324 | sizer_main.SetItemMinSize(self.plotpanel, 400,400) |
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| 325 | |
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| 326 | sizer_main.Add(sizer_params, 0, wx.EXPAND|wx.ALL, 10) |
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| 327 | static_line_3 = wx.StaticLine(self, -1) |
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| 328 | sizer_main.Add(static_line_3, 0, wx.EXPAND, 0) |
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| 329 | |
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| 330 | # Bottom area with the close button |
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| 331 | sizer_button.Add((20, 20), 1, wx.EXPAND|wx.ADJUST_MINSIZE, 0) |
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| 332 | button_OK = wx.Button(self, wx.ID_OK, "Close") |
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| 333 | sizer_button.Add(button_OK, 0, wx.LEFT|wx.RIGHT|wx.ADJUST_MINSIZE, 10) |
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| 334 | |
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| 335 | sizer_main.Add(sizer_button, 0, wx.EXPAND|wx.BOTTOM|wx.TOP, 10) |
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| 336 | self.SetAutoLayout(True) |
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| 337 | self.SetSizer(sizer_main) |
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| 338 | self.Layout() |
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| 339 | self.Centre() |
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| 340 | |
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| 341 | # Bind the Enter key to recalculation |
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| 342 | self.Bind(wx.EVT_TEXT_ENTER, self._recalc) |
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| 343 | |
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| 344 | def _recalc(self, event=None): |
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| 345 | """ |
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[7116b6e0] | 346 | Invoked when the user changed a value on the form. |
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| 347 | Process the form and compute the output to be plottted. |
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[a00ee4c] | 348 | """ |
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| 349 | # Get the content of the form |
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| 350 | content = self._get_values() |
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| 351 | # If the content of the form is invalid, return and do nothing |
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| 352 | if content is None: |
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| 353 | return |
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| 354 | |
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| 355 | # Results object to store the computation outputs. |
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| 356 | results = Results() |
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| 357 | |
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| 358 | # Loop over d_max values |
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| 359 | for i in range(content.npts): |
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| 360 | d = content.dmin + i * (content.dmax - content.dmin)/(content.npts-1.0) |
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| 361 | self.pr_state.d_max = d |
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| 362 | try: |
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[3b865c1] | 363 | out, cov = self.pr_state.invert(self.nfunc) |
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| 364 | |
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| 365 | # Store results |
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[a00ee4c] | 366 | iq0 = self.pr_state.iq0(out) |
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| 367 | rg = self.pr_state.rg(out) |
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| 368 | pos = self.pr_state.get_positive(out) |
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| 369 | pos_err = self.pr_state.get_pos_err(out, cov) |
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| 370 | osc = self.pr_state.oscillations(out) |
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| 371 | |
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| 372 | results.d_max.append(self.pr_state.d_max) |
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| 373 | results.bck.append(self.pr_state.background) |
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| 374 | results.chi2.append(self.pr_state.chi2) |
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| 375 | results.iq0.append(iq0) |
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| 376 | results.rg.append(rg) |
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| 377 | results.pos.append(pos) |
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| 378 | results.pos_err.append(pos_err) |
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| 379 | results.osc.append(osc) |
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| 380 | except: |
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| 381 | # This inversion failed, skip this D_max value |
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[3b865c1] | 382 | logging.error("ExploreDialog: inversion failed for D_max=%s\n%s" % (str(d), sys.exc_value)) |
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[a00ee4c] | 383 | |
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| 384 | self.results = results |
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| 385 | |
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| 386 | # Plot the selected output |
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| 387 | self._plot_output() |
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| 388 | |
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| 389 | ##### testing code ############################################################ |
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[7116b6e0] | 390 | """ |
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| 391 | Example: :: |
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| 392 | |
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[a00ee4c] | 393 | class MyApp(wx.App): |
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[7116b6e0] | 394 | |
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| 395 | #Test application used to invoke the ExploreDialog for testing |
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| 396 | |
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[a00ee4c] | 397 | def OnInit(self): |
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| 398 | from inversion_state import Reader |
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| 399 | from sans.pr.invertor import Invertor |
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| 400 | wx.InitAllImageHandlers() |
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| 401 | |
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| 402 | def call_back(state, datainfo=None): |
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[7116b6e0] | 403 | |
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| 404 | #Dummy call-back method used by the P(r) |
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| 405 | #file reader. |
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| 406 | |
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[a00ee4c] | 407 | print state |
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| 408 | |
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| 409 | # Load test data |
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| 410 | # This would normally be loaded by the application |
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| 411 | # of the P(r) plug-in. |
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| 412 | r = Reader(call_back) |
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| 413 | data = r.read("test_pr_data.prv") |
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| 414 | pr_state = data.meta_data['prstate'] |
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| 415 | |
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| 416 | # Create Invertor object for the data |
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| 417 | # This would normally be assembled by the P(r) plug-in |
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| 418 | pr = Invertor() |
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| 419 | pr.d_max = pr_state.d_max |
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| 420 | pr.alpha = pr_state.alpha |
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| 421 | pr.q_min = pr_state.qmin |
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| 422 | pr.q_max = pr_state.qmax |
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| 423 | pr.x = data.x |
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| 424 | pr.y = data.y |
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| 425 | pr.err = data.y*0.1 |
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| 426 | pr.has_bck = False |
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| 427 | pr.slit_height = pr_state.height |
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| 428 | pr.slit_width = pr_state.width |
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| 429 | |
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| 430 | # Create the dialog |
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| 431 | dialog = ExploreDialog(pr, 10, None, -1, "") |
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| 432 | self.SetTopWindow(dialog) |
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| 433 | dialog.ShowModal() |
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| 434 | dialog.Destroy() |
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| 435 | |
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| 436 | return 1 |
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| 437 | |
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| 438 | if __name__ == "__main__": |
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| 439 | app = MyApp(0) |
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| 440 | app.MainLoop() |
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[7116b6e0] | 441 | |
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| 442 | """ |
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