[6b126e8] | 1 | """ |
---|
| 2 | Unit tests for fitting module |
---|
| 3 | """ |
---|
| 4 | import unittest |
---|
| 5 | from sans.guitools.plottables import Theory1D |
---|
| 6 | from sans.guitools.plottables import Data1D |
---|
| 7 | from sans.fit.ScipyFitting import Parameter |
---|
| 8 | import math |
---|
| 9 | import logging |
---|
| 10 | logging.basicConfig(level=logging.DEBUG, |
---|
| 11 | format='%(asctime)s %(levelname)s %(message)s', |
---|
| 12 | filename='test_log.txt', |
---|
| 13 | filemode='w') |
---|
| 14 | class testFitModule(unittest.TestCase): |
---|
| 15 | def test0(self): |
---|
[985c88b] | 16 | """ test fitting for two set of data and 2 models no constraint""" |
---|
[6b126e8] | 17 | from sans.fit.Loader import Load |
---|
| 18 | load= Load() |
---|
| 19 | #Load the first set of data |
---|
| 20 | load.set_filename("testdata1.txt") |
---|
| 21 | load.set_values() |
---|
| 22 | data1 = Data1D(x=[], y=[],dx=None, dy=None) |
---|
| 23 | load.load_data(data1) |
---|
| 24 | |
---|
| 25 | #Load the second set of data |
---|
| 26 | load.set_filename("testdata2.txt") |
---|
| 27 | load.set_values() |
---|
| 28 | data2 = Data1D(x=[], y=[],dx=None, dy=None) |
---|
| 29 | load.load_data(data2) |
---|
| 30 | |
---|
| 31 | #Importing the Fit module |
---|
| 32 | from sans.fit.Fitting import Fit |
---|
| 33 | fitter= Fit('park') |
---|
| 34 | # Receives the type of model for the fitting |
---|
| 35 | from sans.guitools.LineModel import LineModel |
---|
| 36 | model1 = LineModel() |
---|
| 37 | model2 = LineModel() |
---|
| 38 | |
---|
| 39 | #Do the fit |
---|
[985c88b] | 40 | model1.setParam( 'A', 1) |
---|
| 41 | model1.setParam( 'B', 2) |
---|
| 42 | fitter.set_model(model1,"M1",1, ['A','B']) |
---|
[6b126e8] | 43 | fitter.set_data(data1,1) |
---|
[985c88b] | 44 | |
---|
| 45 | model2.setParam( 'A', 1) |
---|
| 46 | model2.setParam( 'B', 1) |
---|
| 47 | fitter.set_model(model2,"M2",2, ['A','B']) |
---|
[6b126e8] | 48 | fitter.set_data(data2,2) |
---|
| 49 | |
---|
| 50 | |
---|
| 51 | chisqr1, out1, cov1,result= fitter.fit() |
---|
| 52 | print "chisqr1",chisqr1 |
---|
| 53 | print "out1", out1 |
---|
| 54 | print " cov1", cov1 |
---|
[985c88b] | 55 | self.assert_(chisqr1) |
---|
[6b126e8] | 56 | |
---|
| 57 | def test01(self): |
---|
[985c88b] | 58 | """ test fitting for two set of data and 2 models and 2 constraints set on on model""" |
---|
[6b126e8] | 59 | from sans.fit.Loader import Load |
---|
| 60 | load= Load() |
---|
| 61 | #Load the first set of data |
---|
| 62 | load.set_filename("testdata1.txt") |
---|
| 63 | load.set_values() |
---|
| 64 | data1 = Data1D(x=[], y=[],dx=None, dy=None) |
---|
| 65 | load.load_data(data1) |
---|
| 66 | |
---|
| 67 | #Load the second set of data |
---|
| 68 | load.set_filename("testdata2.txt") |
---|
| 69 | load.set_values() |
---|
| 70 | data2 = Data1D(x=[], y=[],dx=None, dy=None) |
---|
| 71 | load.load_data(data2) |
---|
| 72 | |
---|
| 73 | #Importing the Fit module |
---|
| 74 | from sans.fit.Fitting import Fit |
---|
| 75 | fitter= Fit('park') |
---|
| 76 | # Receives the type of model for the fitting |
---|
| 77 | from sans.guitools.LineModel import LineModel |
---|
| 78 | model1 = LineModel() |
---|
| 79 | model2 = LineModel() |
---|
| 80 | |
---|
| 81 | #Do the fit |
---|
[985c88b] | 82 | model1.setParam( 'A', 1) |
---|
| 83 | model1.setParam( 'B', 1) |
---|
| 84 | fitter.set_model(model1,"M1",1, ['A','B']) |
---|
[6b126e8] | 85 | fitter.set_data(data1,1) |
---|
[985c88b] | 86 | |
---|
| 87 | model2.setParam( 'A','M1.A') |
---|
| 88 | model2.setParam( 'B', 'M1.B') |
---|
| 89 | fitter.set_model(model2,"M2",2, ['A','B']) |
---|
[6b126e8] | 90 | fitter.set_data(data2,2) |
---|
| 91 | |
---|
| 92 | |
---|
| 93 | chisqr1, out1, cov1= fitter.fit() |
---|
| 94 | print "chisqr1",chisqr1 |
---|
| 95 | print "out1", out1 |
---|
| 96 | print " cov1", cov1 |
---|
[60dc5f2c] | 97 | self.assert_(chisqr1) |
---|
[6b126e8] | 98 | |
---|
| 99 | |
---|
| 100 | |
---|
| 101 | def test1(self): |
---|
[985c88b] | 102 | """ test fitting for two set of data 2 model on constraint set on 1 model""" |
---|
[6b126e8] | 103 | from sans.fit.Loader import Load |
---|
| 104 | load= Load() |
---|
| 105 | #Load the first set of data |
---|
| 106 | load.set_filename("testdata_line.txt") |
---|
| 107 | load.set_values() |
---|
| 108 | data1 = Data1D(x=[], y=[],dx=None, dy=None) |
---|
| 109 | load.load_data(data1) |
---|
| 110 | |
---|
| 111 | #Load the second set of data |
---|
| 112 | load.set_filename("testdata_line1.txt") |
---|
| 113 | load.set_values() |
---|
| 114 | data2 = Data1D(x=[], y=[],dx=None, dy=None) |
---|
| 115 | load.load_data(data2) |
---|
| 116 | |
---|
| 117 | #Importing the Fit module |
---|
| 118 | from sans.fit.Fitting import Fit |
---|
| 119 | fitter= Fit('park') |
---|
| 120 | # Receives the type of model for the fitting |
---|
| 121 | from sans.guitools.LineModel import LineModel |
---|
| 122 | model1 = LineModel() |
---|
| 123 | model2 = LineModel() |
---|
| 124 | |
---|
| 125 | #Do the fit |
---|
[985c88b] | 126 | model1.setParam( 'A',1) |
---|
| 127 | model1.setParam( 'B',1) |
---|
| 128 | fitter.set_model(model1,"M1",1, ['A','B']) |
---|
[6b126e8] | 129 | fitter.set_data(data1,1) |
---|
[985c88b] | 130 | |
---|
| 131 | model2.setParam( 'A','M1.A') |
---|
| 132 | model2.setParam( 'B', 1) |
---|
| 133 | fitter.set_model(model2,"M2",2, ['A','B']) |
---|
[6b126e8] | 134 | fitter.set_data(data2,2) |
---|
| 135 | |
---|
| 136 | |
---|
| 137 | chisqr1, out1, cov1= fitter.fit() |
---|
| 138 | print "chisqr1",chisqr1 |
---|
| 139 | print "out1", out1 |
---|
| 140 | print " cov1", cov1 |
---|
[60dc5f2c] | 141 | self.assert_(chisqr1) |
---|
[6b126e8] | 142 | |
---|
| 143 | |
---|
| 144 | def test2(self): |
---|
[985c88b] | 145 | """ test fitting for two data 2 model not equal nombre of parameters fit""" |
---|
[6b126e8] | 146 | from sans.fit.Loader import Load |
---|
| 147 | load= Load() |
---|
| 148 | #Load the first set of data |
---|
| 149 | load.set_filename("testdata_line.txt") |
---|
| 150 | load.set_values() |
---|
| 151 | data1 = Data1D(x=[], y=[],dx=None, dy=None) |
---|
| 152 | load.load_data(data1) |
---|
| 153 | |
---|
| 154 | #Load the second set of data |
---|
| 155 | load.set_filename("testdata_line1.txt") |
---|
| 156 | load.set_values() |
---|
| 157 | data2 = Data1D(x=[], y=[],dx=None, dy=None) |
---|
| 158 | load.load_data(data2) |
---|
| 159 | |
---|
| 160 | #Importing the Fit module |
---|
| 161 | from sans.fit.Fitting import Fit |
---|
[30c6721] | 162 | fitter= Fit('park') |
---|
[6b126e8] | 163 | # Receives the type of model for the fitting |
---|
| 164 | from sans.guitools.LineModel import LineModel |
---|
| 165 | model1 = LineModel() |
---|
| 166 | model2 = LineModel() |
---|
| 167 | |
---|
| 168 | #Do the fit |
---|
[985c88b] | 169 | model1.setParam( 'A',1) |
---|
| 170 | model1.setParam( 'B',1) |
---|
| 171 | fitter.set_model(model1,"M1",1, ['A','B']) |
---|
[6b126e8] | 172 | fitter.set_data(data1,1) |
---|
[985c88b] | 173 | |
---|
| 174 | model2.setParam( 'A',1) |
---|
[6b126e8] | 175 | |
---|
[985c88b] | 176 | fitter.set_model(model2,"M2",2, ['A']) |
---|
[6b126e8] | 177 | fitter.set_data(data2,2) |
---|
| 178 | |
---|
| 179 | |
---|
| 180 | chisqr1, out1, cov1= fitter.fit() |
---|
| 181 | print "chisqr1",chisqr1 |
---|
| 182 | print "out1", out1 |
---|
| 183 | print " cov1", cov1 |
---|
[60dc5f2c] | 184 | self.assert_(chisqr1) |
---|
[6b126e8] | 185 | |
---|
| 186 | |
---|
| 187 | |
---|
| 188 | |
---|
| 189 | |
---|
| 190 | |
---|