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55  <div class="section" id="scipyfitting">
56<h1>ScipyFitting<a class="headerlink" href="#scipyfitting" title="Permalink to this headline">¶</a></h1>
57<div class="section" id="mod-sans-fit-scipyfitting">
58<h2>:mod:` sans.fit.ScipyFitting`<a class="headerlink" href="#mod-sans-fit-scipyfitting" title="Permalink to this headline">¶</a></h2>
59<span class="target" id="module-sans.fit.ScipyFitting"></span><p>ScipyFitting module contains FitArrange , ScipyFit,
60Parameter classes.All listed classes work together to perform a
61simple fit with scipy optimizer.</p>
62<dl class="class">
63<dt id="sans.fit.ScipyFitting.ScipyFit">
64<em class="property">class </em><tt class="descclassname">sans.fit.ScipyFitting.</tt><tt class="descname">ScipyFit</tt><a class="headerlink" href="#sans.fit.ScipyFitting.ScipyFit" title="Permalink to this definition">¶</a></dt>
65<dd><p>Bases: <a class="reference internal" href="AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitEngine" title="sans.fit.AbstractFitEngine.FitEngine"><tt class="xref py py-class docutils literal"><span class="pre">sans.fit.AbstractFitEngine.FitEngine</span></tt></a></p>
66<p>ScipyFit performs the Fit.This class can be used as follow:
67#Do the fit SCIPY
68create an engine: engine = ScipyFit()
69Use data must be of type plottable
70Use a sans model</p>
71<p>Add data with a dictionnary of FitArrangeDict where Uid is a key and data
72is saved in FitArrange object.
73engine.set_data(data,Uid)</p>
74<p>Set model parameter &#8220;M1&#8221;= model.name add {model.parameter.name:value}.</p>
75<table class="docutils field-list" frame="void" rules="none">
76<col class="field-name" />
77<col class="field-body" />
78<tbody valign="top">
79<tr class="field-odd field"><th class="field-name">Note :</th><td class="field-body">Set_param() if used must always preceded set_model()
80for the fit to be performed.In case of Scipyfit set_param is called in
81fit () automatically.</td>
82</tr>
83</tbody>
84</table>
85<p>engine.set_param( model,&#8221;M1&#8221;, {&#8216;A&#8217;:2,&#8217;B&#8217;:4})</p>
86<p>Add model with a dictionnary of FitArrangeDict{} where Uid is a key and model
87is save in FitArrange object.
88engine.set_model(model,Uid)</p>
89<p>engine.fit return chisqr,[model.parameter 1,2,..],[[err1....][..err2...]]
90chisqr1, out1, cov1=engine.fit({model.parameter.name:value},qmin,qmax)</p>
91<dl class="method">
92<dt id="sans.fit.ScipyFitting.ScipyFit.__init__">
93<tt class="descname">__init__</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.ScipyFitting.ScipyFit.__init__" title="Permalink to this definition">¶</a></dt>
94<dd><p>Creates a dictionary (self.fit_arrange_dict={})of FitArrange elements
95with Uid as keys</p>
96</dd></dl>
97
98<dl class="attribute">
99<dt id="sans.fit.ScipyFitting.ScipyFit.__module__">
100<tt class="descname">__module__</tt><em class="property"> = 'sans.fit.ScipyFitting'</em><a class="headerlink" href="#sans.fit.ScipyFitting.ScipyFit.__module__" title="Permalink to this definition">¶</a></dt>
101<dd></dd></dl>
102
103<dl class="method">
104<dt id="sans.fit.ScipyFitting.ScipyFit._check_param_range">
105<tt class="descname">_check_param_range</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.ScipyFitting.ScipyFit._check_param_range" title="Permalink to this definition">¶</a></dt>
106<dd><p>Check parameter range and set the initial value inside
107if it is out of range.</p>
108<p>: model: park model object</p>
109</dd></dl>
110
111<dl class="method">
112<dt id="sans.fit.ScipyFitting.ScipyFit._get_zero_shift">
113<tt class="descname">_get_zero_shift</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.ScipyFitting.ScipyFit._get_zero_shift" title="Permalink to this definition">¶</a></dt>
114<dd><p>Get 10% shift of the param value = 0 based on the range value</p>
115<p>: param range: min or max value of the bounds</p>
116</dd></dl>
117
118<dl class="method">
119<dt id="sans.fit.ScipyFitting.ScipyFit.fit">
120<tt class="descname">fit</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.ScipyFitting.ScipyFit.fit" title="Permalink to this definition">¶</a></dt>
121<dd></dd></dl>
122
123<dl class="method">
124<dt id="sans.fit.ScipyFitting.ScipyFit.get_model">
125<tt class="descname">get_model</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.ScipyFitting.ScipyFit.get_model" title="Permalink to this definition">¶</a></dt>
126<dd><table class="docutils field-list" frame="void" rules="none">
127<col class="field-name" />
128<col class="field-body" />
129<tbody valign="top">
130<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>id</strong> &#8211; id is key in the dictionary containing the model to return</td>
131</tr>
132<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body">a model at this id or None if no FitArrange element was
133created with this id</td>
134</tr>
135</tbody>
136</table>
137</dd></dl>
138
139<dl class="method">
140<dt id="sans.fit.ScipyFitting.ScipyFit.get_problem_to_fit">
141<tt class="descname">get_problem_to_fit</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.ScipyFitting.ScipyFit.get_problem_to_fit" title="Permalink to this definition">¶</a></dt>
142<dd><p>return the self.selected value of the fit problem of id</p>
143<table class="docutils field-list" frame="void" rules="none">
144<col class="field-name" />
145<col class="field-body" />
146<tbody valign="top">
147<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>id</strong> &#8211; the id of the problem</td>
148</tr>
149</tbody>
150</table>
151</dd></dl>
152
153<dl class="method">
154<dt id="sans.fit.ScipyFitting.ScipyFit.remove_fit_problem">
155<tt class="descname">remove_fit_problem</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.ScipyFitting.ScipyFit.remove_fit_problem" title="Permalink to this definition">¶</a></dt>
156<dd><p>remove   fitarrange in id</p>
157</dd></dl>
158
159<dl class="method">
160<dt id="sans.fit.ScipyFitting.ScipyFit.select_problem_for_fit">
161<tt class="descname">select_problem_for_fit</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.ScipyFitting.ScipyFit.select_problem_for_fit" title="Permalink to this definition">¶</a></dt>
162<dd><p>select a couple of model and data at the id position in dictionary
163and set in self.selected value to value</p>
164<table class="docutils field-list" frame="void" rules="none">
165<col class="field-name" />
166<col class="field-body" />
167<tbody valign="top">
168<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>value</strong> &#8211; the value to allow fitting.
169can only have the value one or zero</td>
170</tr>
171</tbody>
172</table>
173</dd></dl>
174
175<dl class="method">
176<dt id="sans.fit.ScipyFitting.ScipyFit.set_data">
177<tt class="descname">set_data</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.ScipyFitting.ScipyFit.set_data" title="Permalink to this definition">¶</a></dt>
178<dd><p>Receives plottable, creates a list of data to fit,set data
179in a FitArrange object and adds that object in a dictionary
180with key id.</p>
181<table class="docutils field-list" frame="void" rules="none">
182<col class="field-name" />
183<col class="field-body" />
184<tbody valign="top">
185<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
186<li><strong>data</strong> &#8211; data added</li>
187<li><strong>id</strong> &#8211; unique key corresponding to a fitArrange object with data</li>
188</ul>
189</td>
190</tr>
191</tbody>
192</table>
193</dd></dl>
194
195<dl class="method">
196<dt id="sans.fit.ScipyFitting.ScipyFit.set_model">
197<tt class="descname">set_model</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.ScipyFitting.ScipyFit.set_model" title="Permalink to this definition">¶</a></dt>
198<dd><p>set a model on a given  in the fit engine.</p>
199<table class="docutils field-list" frame="void" rules="none">
200<col class="field-name" />
201<col class="field-body" />
202<tbody valign="top">
203<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>model</strong> &#8211; sans.models type</td>
204</tr>
205</tbody>
206</table>
207<dl class="docutils">
208<dt>:param <span class="classifier-delimiter">:</span> <span class="classifier">is the key of the fitArrange dictionary where model is </span></dt>
209<dd>saved as a value</dd>
210</dl>
211<table class="docutils field-list" frame="void" rules="none">
212<col class="field-name" />
213<col class="field-body" />
214<tbody valign="top">
215<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
216<li><strong>pars</strong> &#8211; the list of parameters to fit</li>
217<li><strong>constraints</strong> &#8211; <p>list of
218tuple (name of parameter, value of parameters)
219the value of parameter must be a string to constraint 2 different
220parameters.
221Example: 
222we want to fit 2 model M1 and M2 both have parameters A and B.
223constraints can be:</p>
224<blockquote>
225<div>constraints = [(M1.A, M2.B+2), (M1.B= M2.A <a href="#id1"><span class="problematic" id="id2">*</span></a>5),...,]</div></blockquote>
226</li>
227</ul>
228</td>
229</tr>
230<tr class="field-even field"><th class="field-name">Note :</th><td class="field-body"><p class="first last">pars must contains only name of existing model&#8217;s parameters</p>
231</td>
232</tr>
233</tbody>
234</table>
235</dd></dl>
236
237</dd></dl>
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249  <ul>
250<li><a class="reference internal" href="#">ScipyFitting</a><ul>
251<li><a class="reference internal" href="#mod-sans-fit-scipyfitting">:mod:` sans.fit.ScipyFitting`</a></li>
252</ul>
253</li>
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255
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