inversion_panel.py @ 632adc4

ESS_GUIESS_GUI_DocsESS_GUI_batch_fittingESS_GUI_bumps_abstractionESS_GUI_iss1116ESS_GUI_iss879ESS_GUI_iss959ESS_GUI_openclESS_GUI_orderingESS_GUI_sync_sascalccostrafo411magnetic_scattrelease-4.1.1release-4.1.2release-4.2.2release_4.0.1ticket-1009ticket-1094-headlessticket-1242-2d-resolutionticket-1243ticket-1249ticket885unittest-saveload

Last change on this file since 632adc4 was 11f5196, checked in by Jae Cho <jhjcho@…>, 13 years ago

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1	#!/usr/bin/env python
2
3	# version
4	__id__ = "$Id: aboutdialog.py 1193 2007-05-03 17:29:59Z dmitriy $"
5	__revision__ = "$Revision: 1193 $"
6
7	import wx
8	import os
9	import sys
10	import logging
11	from wx.lib.scrolledpanel import ScrolledPanel
12	from sans.guiframe.events import StatusEvent
13	from sans.guiframe.panel_base import PanelBase
14	from inversion_state import InversionState
15	from pr_widgets import PrTextCtrl
16	from pr_widgets import DataFileTextCtrl
17	from pr_widgets import OutputTextCtrl
18
19	if sys.platform.count("darwin")==0:
20	FONT_VARIANT = 0
21	else:
22	FONT_VARIANT = 1
23
24	class InversionControl(ScrolledPanel, PanelBase):
25	"""
26	"""
27	window_name = 'pr_control'
28	window_caption = "P(r) control panel"
29	CENTER_PANE = True
30
31	# Figure of merit parameters [default]
32
33	## Oscillation parameters (sin function = 1.1)
34	oscillation_max = 1.5
35
36	def __init__(self, parent, id=-1, plots=None,
37	standalone=False, **kwargs):
38	"""
39	"""
40	ScrolledPanel.__init__(self, parent, id=id, **kwargs)
41	PanelBase.__init__(self, parent)
42	self.SetupScrolling()
43	#Set window's font size
44	self.SetWindowVariant(variant=FONT_VARIANT)
45
46	self.plots = plots
47	self.radio_buttons = {}
48	self.parent = parent
49
50	## Data file TextCtrl
51	self.data_file = None
52	self.plot_data = None
53	self.nfunc_ctl = None
54	self.alpha_ctl = None
55	self.dmax_ctl = None
56	self.time_ctl = None
57	self.chi2_ctl = None
58	self.osc_ctl = None
59	self.file_radio = None
60	self.plot_radio = None
61	self.label_sugg = None
62	self.qmin_ctl = None
63	self.qmax_ctl = None
64	self.swidth_ctl = None
65	self.sheight_ctl = None
66
67	self.rg_ctl = None
68	self.iq0_ctl = None
69	self.bck_chk = None
70	self.bck_ctl = None
71
72	# TextCtrl for fraction of positive P(r)
73	self.pos_ctl = None
74
75	# TextCtrl for fraction of 1 sigma positive P(r)
76	self.pos_err_ctl = None
77
78	## Estimates
79	self.alpha_estimate_ctl = None
80	self.nterms_estimate_ctl = None
81	## D_max distance explorator
82	self.distance_explorator_ctl = None
83	## Data manager
84	self._manager = None
85	## Standalone flage
86	self.standalone = standalone
87	## Default file location for save
88	self._default_save_location = os.getcwd()
89	# Default width
90	self._default_width = 350
91	self._do_layout()
92
93	def __setattr__(self, name, value):
94	"""
95	Allow direct hooks to text boxes
96	"""
97	if name == 'nfunc':
98	self.nfunc_ctl.SetValue(str(int(value)))
99	elif name == 'd_max':
100	self.dmax_ctl.SetValue(str(value))
101	elif name == 'alpha':
102	self.alpha_ctl.SetValue(str(value))
103	elif name == 'chi2':
104	self.chi2_ctl.SetValue("%-5.2g" % value)
105	elif name == 'bck':
106	self.bck_ctl.SetValue("%-5.2g" % value)
107	elif name == 'q_min':
108	self.qmin_ctl.SetValue("%-5.2g" % value)
109	elif name == 'q_max':
110	self.qmax_ctl.SetValue("%-5.2g" % value)
111	elif name == 'elapsed':
112	self.time_ctl.SetValue("%-5.2g" % value)
113	elif name =='rg':
114	self.rg_ctl.SetValue("%-5.2g" % value)
115	elif name == 'iq0':
116	self.iq0_ctl.SetValue("%-5.2g" % value)
117	elif name == 'oscillation':
118	self.osc_ctl.SetValue("%-5.2g" % value)
119	elif name == 'slit_width':
120	self.swidth_ctl.SetValue("%-5.2g" % value)
121	elif name == 'slit_height':
122	self.sheight_ctl.SetValue("%-5.2g" % value)
123	elif name == 'positive':
124	self.pos_ctl.SetValue("%-5.2g" % value)
125	elif name == 'pos_err':
126	self.pos_err_ctl.SetValue("%-5.2g" % value)
127	elif name == 'alpha_estimate':
128	self.alpha_estimate_ctl.SetToolTipString("Click to accept value.")
129	self.alpha_estimate_ctl.Enable(True)
130	self.alpha_estimate_ctl.SetLabel("%-3.1g" % value)
131	#self.alpha_estimate_ctl.Show()
132	#self.label_sugg.Show()
133	elif name == 'nterms_estimate':
134	self.nterms_estimate_ctl.SetToolTipString("Click to accept value.")
135	self.nterms_estimate_ctl.Enable(True)
136	self.nterms_estimate_ctl.SetLabel("%-g" % value)
137	elif name == 'plotname':
138	self.plot_data.SetValue(str(value))
139	self._on_pars_changed(None)
140	elif name == 'datafile':
141	self.plot_data.SetValue(str(value))
142	self._on_pars_changed(None)
143	else:
144	wx.Panel.__setattr__(self, name, value)
145
146	def __getattr__(self, name):
147	"""
148	Allow direct hooks to text boxes
149	"""
150	if name == 'nfunc':
151	try:
152	return int(self.nfunc_ctl.GetValue())
153	except:
154	return -1
155	elif name == 'd_max':
156	try:
157	return self.dmax_ctl.GetValue()
158	except:
159	return -1.0
160	elif name == 'alpha':
161	try:
162	return self.alpha_ctl.GetValue()
163	except:
164	return -1.0
165	elif name == 'chi2':
166	try:
167	return float(self.chi2_ctl.GetValue())
168	except:
169	return None
170	elif name == 'bck':
171	try:
172	return float(self.bck_ctl.GetValue())
173	except:
174	return None
175	elif name == 'q_min':
176	try:
177	return float(self.qmin_ctl.GetValue())
178	except:
179	return 0.0
180	elif name=='q_max':
181	try:
182	return float(self.qmax_ctl.GetValue())
183	except:
184	return 0.0
185	elif name == 'elapsed':
186	try:
187	return float(self.time_ctl.GetValue())
188	except:
189	return None
190	elif name == 'rg':
191	try:
192	return float(self.rg_ctl.GetValue())
193	except:
194	return None
195	elif name=='iq0':
196	try:
197	return float(self.iq0_ctl.GetValue())
198	except:
199	return None
200	elif name == 'oscillation':
201	try:
202	return float(self.osc_ctl.GetValue())
203	except:
204	return None
205	elif name == 'slit_width':
206	try:
207	return float(self.swidth_ctl.GetValue())
208	except:
209	return None
210	elif name=='slit_height':
211	try:
212	return float(self.sheight_ctl.GetValue())
213	except:
214	return None
215	elif name == 'pos':
216	try:
217	return float(self.pos_ctl.GetValue())
218	except:
219	return None
220	elif name == 'pos_err':
221	try:
222	return float(self.pos_err_ctl.GetValue())
223	except:
224	return None
225	elif name == 'alpha_estimate':
226	try:
227	return float(self.alpha_estimate_ctl.GetLabel())
228	except:
229	return None
230	elif name == 'nterms_estimate':
231	try:
232	return int(self.nterms_estimate_ctl.GetLabel())
233	except:
234	return None
235	elif name == 'plotname':
236	return self.plot_data.GetValue()
237	elif name == 'datafile':
238	return self.plot_data.GetValue()
239	else:
240	return wx.Panel.__getattribute__(self, name)
241
242	def save_project(self, doc=None):
243	"""
244	return an xml node containing state of the panel
245	that guiframe can write to file
246	"""
247	data = self.get_data()
248	state = self.get_state()
249	if data is not None:
250	new_doc = self._manager.state_reader.write_toXML(data, state)
251	if new_doc is not None:
252	if doc is not None and hasattr(doc, "firstChild"):
253	child = new_doc.firstChild.firstChild
254	doc.firstChild.appendChild(child)
255	else:
256	doc = new_doc
257	return doc
258
259	def on_save(self, evt=None):
260	"""
261	Method used to create a memento of the current state
262
263	:return: state object
264	"""
265	# Ask the user the location of the file to write to.
266	path = None
267	dlg = wx.FileDialog(self, "Choose a file",
268	self._default_save_location, "", "*.prv", wx.SAVE)
269	if dlg.ShowModal() == wx.ID_OK:
270	path = dlg.GetPath()
271	self._default_save_location = os.path.dirname(path)
272	else:
273	return None
274
275	dlg.Destroy()
276
277	state = self.get_state()
278
279	# MAC always needs the extension for saving
280	extens = ".prv"
281	# Make sure the ext included in the file name
282	fName = os.path.splitext(path)[0] + extens
283	self._manager.save_data(filepath=fName, prstate=state)
284
285	return state
286
287	def get_data(self):
288	"""
289	"""
290	return self._manager.get_data()
291
292	def get_state(self):
293	"""
294	Get the current state
295
296	: return: state object
297	"""
298	# Construct the state object
299	state = InversionState()
300
301	# Read the panel's parameters
302	flag, alpha, dmax, nfunc, qmin, \
303	qmax, height, width = self._read_pars()
304
305	state.nfunc = nfunc
306	state.d_max = dmax
307	state.alpha = alpha
308	state.qmin = qmin
309	state.qmax = qmax
310	state.width = width
311	state.height = height
312
313	# Data file
314	state.file = self.plot_data.GetValue()
315
316	# Background evaluation checkbox
317	state.estimate_bck = self.bck_chk.IsChecked()
318
319	# Estimates
320	state.nterms_estimate = self.nterms_estimate
321	state.alpha_estimate = self.alpha_estimate
322
323	# Read the output values
324	state.chi2 = self.chi2
325	state.elapsed = self.elapsed
326	state.osc = self.oscillation
327	state.pos = self.pos
328	state.pos_err = self.pos_err
329	state.rg = self.rg
330	state.iq0 = self.iq0
331	state.bck = self.bck
332
333	return state
334
335	def set_state(self, state):
336	"""
337	Set the state of the panel and inversion problem to
338	the state passed as a parameter.
339	Execute the inversion immediately after filling the
340	controls.
341
342	:param state: InversionState object
343	"""
344	if state.nfunc is not None:
345	self.nfunc = state.nfunc
346	if state.d_max is not None:
347	self.d_max = state.d_max
348	if state.alpha is not None:
349	self.alpha = state.alpha
350	if state.qmin is not None:
351	self.q_min = state.qmin
352	if state.qmax is not None:
353	self.q_max = state.qmax
354	if state.width is not None:
355	self.slit_width = state.width
356	if state.height is not None:
357	self.slit_height = state.height
358
359	# Data file
360	self.plot_data.SetValue(str(state.file))
361
362	# Background evaluation checkbox
363	self.bck_chk.SetValue(state.estimate_bck)
364
365	# Estimates
366	if state.nterms_estimate is not None:
367	self.nterms_estimate = state.nterms_estimate
368	if state.alpha_estimate is not None:
369	self.alpha_estimate = state.alpha_estimate
370
371
372	# Read the output values
373	if state.chi2 is not None:
374	self.chi2 = state.chi2
375	if state.elapsed is not None:
376	self.elapsed = state.elapsed
377	if state.osc is not None:
378	self.oscillation = state.osc
379	if state.pos is not None:
380	self.positive = state.pos
381	if state.pos_err is not None:
382	self.pos_err = state.pos_err
383	if state.rg is not None:
384	self.rg = state.rg
385	if state.iq0 is not None:
386	self.iq0 = state.iq0
387	if state.bck is not None:
388	self.bck = state.bck
389
390	# Perform inversion
391	self._on_invert(None)
392
393	def set_manager(self, manager):
394	self._manager = manager
395
396	def _do_layout(self):
397	vbox = wx.GridBagSizer(0,0)
398	iy_vb = 0
399
400	# ----- I(q) data -----
401	databox = wx.StaticBox(self, -1, "I(q) data source")
402
403	boxsizer1 = wx.StaticBoxSizer(databox, wx.VERTICAL)
404	boxsizer1.SetMinSize((self._default_width, 50))
405	pars_sizer = wx.GridBagSizer(5, 5)
406
407	iy = 0
408	self.file_radio = wx.StaticText(self, -1, "Name:")
409	pars_sizer.Add(self.file_radio, (iy, 0), (1, 1),
410	wx.LEFT\|wx.EXPAND\|wx.ADJUST_MINSIZE, 15)
411
412	self.plot_data = DataFileTextCtrl(self, -1, size=(260,20))
413
414	pars_sizer.Add(self.plot_data, (iy, 1), (1, 1),
415	wx.EXPAND\|wx.LEFT\|wx.RIGHT\|wx.ADJUST_MINSIZE, 15)
416
417	self.bck_chk = wx.CheckBox(self, -1, "Estimate background level")
418	hint_msg = "Check box to let the fit estimate "
419	hint_msg += "the constant background level."
420	self.bck_chk.SetToolTipString(hint_msg)
421	self.bck_chk.Bind(wx.EVT_CHECKBOX, self._on_pars_changed)
422	iy += 1
423	pars_sizer.Add(self.bck_chk, (iy, 0), (1, 2),
424	wx.LEFT\|wx.EXPAND\|wx.ADJUST_MINSIZE, 15)
425	boxsizer1.Add(pars_sizer, 0, wx.EXPAND)
426	vbox.Add(boxsizer1, (iy_vb, 0), (1, 1),
427	wx.LEFT\|wx.RIGHT\|wx.EXPAND\|wx.ADJUST_MINSIZE\|wx.TOP, 5)
428
429	# ----- Add slit parameters -----
430	if True:
431	sbox = wx.StaticBox(self, -1, "Slit parameters")
432	sboxsizer = wx.StaticBoxSizer(sbox, wx.VERTICAL)
433	sboxsizer.SetMinSize((self._default_width, 20))
434
435	sizer_slit = wx.GridBagSizer(5, 5)
436
437	label_sheight = wx.StaticText(self, -1, "Height", size=(40, 20))
438	label_swidth = wx.StaticText(self, -1, "Width", size=(40, 20))
439	#label_sunits1 = wx.StaticText(self, -1, "[A^(-1)]")
440	label_sunits2 = wx.StaticText(self, -1, "[A^(-1)]", size=(55,20))
441	self.sheight_ctl = PrTextCtrl(self, -1, style=wx.TE_PROCESS_ENTER,
442	size=(60,20))
443	self.swidth_ctl = PrTextCtrl(self, -1, style=wx.TE_PROCESS_ENTER,
444	size=(60,20))
445	hint_msg = "Enter slit height in units of Q or leave blank."
446	self.sheight_ctl.SetToolTipString(hint_msg)
447	hint_msg = "Enter slit width in units of Q or leave blank."
448	self.swidth_ctl.SetToolTipString(hint_msg)
449	#self.sheight_ctl.Bind(wx.EVT_TEXT, self._on_pars_changed)
450	#self.swidth_ctl.Bind(wx.EVT_TEXT, self._on_pars_changed)
451
452	iy = 0
453	sizer_slit.Add(label_sheight, (iy, 0), (1, 1),
454	wx.LEFT\|wx.EXPAND, 5)
455	sizer_slit.Add(self.sheight_ctl, (iy, 1), (1, 1),
456	wx.LEFT\|wx.EXPAND, 5)
457
458	sizer_slit.Add(label_swidth, (iy, 2), (1, 1),
459	wx.LEFT\|wx.EXPAND, 5)
460	sizer_slit.Add(self.swidth_ctl, (iy, 3), (1, 1),
461	wx.LEFT\|wx.EXPAND, 5)
462	sizer_slit.Add(label_sunits2, (iy, 4), (1, 1),
463	wx.LEFT\|wx.EXPAND, 5)
464
465	sboxsizer.Add(sizer_slit, wx.TOP, 15)
466	iy_vb += 1
467	vbox.Add(sboxsizer, (iy_vb, 0), (1, 1),
468	wx.LEFT\|wx.RIGHT\|wx.EXPAND\|wx.ADJUST_MINSIZE, 5)
469
470
471	# ----- Q range -----
472	qbox = wx.StaticBox(self, -1, "Q range")
473	qboxsizer = wx.StaticBoxSizer(qbox, wx.VERTICAL)
474	qboxsizer.SetMinSize((self._default_width, 20))
475
476	sizer_q = wx.GridBagSizer(5, 5)
477
478	label_qmin = wx.StaticText(self, -1, "Q min", size=(40, 20))
479	label_qmax = wx.StaticText(self, -1, "Q max", size=(40, 20))
480	#label_qunits1 = wx.StaticText(self, -1, "[A^(-1)]")
481	label_qunits2 = wx.StaticText(self, -1, "[A^(-1)]", size=(55, 20))
482	self.qmin_ctl = PrTextCtrl(self, -1, style=wx.TE_PROCESS_ENTER,
483	size=(60,20))
484	self.qmax_ctl = PrTextCtrl(self, -1, style=wx.TE_PROCESS_ENTER,
485	size=(60,20))
486	hint_msg = "Select a lower bound for Q or leave blank."
487	self.qmin_ctl.SetToolTipString(hint_msg)
488	hint_msg = "Select an upper bound for Q or leave blank."
489	self.qmax_ctl.SetToolTipString(hint_msg)
490	self.qmin_ctl.Bind(wx.EVT_TEXT, self._on_pars_changed)
491	self.qmax_ctl.Bind(wx.EVT_TEXT, self._on_pars_changed)
492
493	iy = 0
494	sizer_q.Add(label_qmin, (iy, 0), (1, 1), wx.LEFT\|wx.EXPAND, 5)
495	sizer_q.Add(self.qmin_ctl, (iy, 1), (1, 1), wx.LEFT\|wx.EXPAND, 5)
496	#sizer_q.Add(label_qunits1, (iy,2), (1,1), wx.LEFT\|wx.EXPAND, 15)
497	sizer_q.Add(label_qmax, (iy, 2), (1, 1), wx.LEFT\|wx.EXPAND, 5)
498	sizer_q.Add(self.qmax_ctl, (iy, 3), (1, 1), wx.LEFT\|wx.EXPAND, 5)
499	sizer_q.Add(label_qunits2, (iy, 4), (1, 1), wx.LEFT\|wx.EXPAND, 5)
500	qboxsizer.Add(sizer_q, wx.TOP, 15)
501
502	iy_vb += 1
503	vbox.Add(qboxsizer, (iy_vb,0), (1,1),
504	wx.LEFT\|wx.RIGHT\|wx.EXPAND\|wx.ADJUST_MINSIZE, 5)
505
506	# ----- Parameters -----
507	parsbox = wx.StaticBox(self, -1, "Parameters")
508	boxsizer2 = wx.StaticBoxSizer(parsbox, wx.VERTICAL)
509	boxsizer2.SetMinSize((self._default_width,50))
510
511	explanation = "P(r) is found by fitting a set of base functions"
512	explanation += " to I(Q). The minimization involves"
513	explanation += " a regularization term to ensure a smooth P(r)."
514	explanation += " The regularization constant gives the size of that "
515	explanation += "term. The suggested value is the value above which the"
516	explanation += " output P(r) will have only one peak."
517	label_explain = wx.StaticText(self, -1, explanation, size=(280,90))
518	boxsizer2.Add(label_explain, wx.LEFT\|wx.BOTTOM, 5)
519
520
521
522	label_nfunc = wx.StaticText(self, -1, "Number of terms")
523	label_nfunc.SetMinSize((120, 20))
524	label_alpha = wx.StaticText(self, -1, "Regularization constant")
525	label_dmax = wx.StaticText(self, -1, "Max distance [A]")
526	self.label_sugg = wx.StaticText(self, -1, "Suggested value")
527	#self.label_sugg.Hide()
528
529	self.nfunc_ctl = PrTextCtrl(self, -1, style=wx.TE_PROCESS_ENTER,
530	size=(60,20))
531	self.nfunc_ctl.SetToolTipString("Number of terms in the expansion.")
532	self.alpha_ctl = PrTextCtrl(self, -1, style=wx.TE_PROCESS_ENTER,
533	size=(60,20))
534	hint_msg = "Control parameter for the size of the regularization term."
535	self.alpha_ctl.SetToolTipString(hint_msg)
536	self.dmax_ctl = PrTextCtrl(self, -1, style=wx.TE_PROCESS_ENTER,
537	size=(60,20))
538	hint_msg = "Maximum distance between any two points in the system."
539	self.dmax_ctl.SetToolTipString(hint_msg)
540	id = wx.NewId()
541	self.alpha_estimate_ctl = wx.Button(self, id, "")
542	#self.alpha_estimate_ctl.Hide()
543	self.Bind(wx.EVT_BUTTON, self._on_accept_alpha, id = id)
544	self.alpha_estimate_ctl.Enable(False)
545	#self.alpha_estimate_ctl.SetBackgroundColour('#ffdf85')
546	#self.alpha_estimate_ctl.SetBackgroundColour(self.GetBackgroundColour())
547	self.alpha_estimate_ctl.SetToolTipString("Waiting for estimate...")
548
549	id = wx.NewId()
550	self.nterms_estimate_ctl = wx.Button(self, id, "")
551	#self.nterms_estimate_ctl.Hide()
552	self.Bind(wx.EVT_BUTTON, self._on_accept_nterms, id = id)
553	self.nterms_estimate_ctl.Enable(False)
554
555	self.nterms_estimate_ctl.SetToolTipString("Waiting for estimate...")
556
557	self.nfunc_ctl.Bind(wx.EVT_TEXT, self._read_pars)
558	self.alpha_ctl.Bind(wx.EVT_TEXT, self._read_pars)
559	self.dmax_ctl.Bind(wx.EVT_TEXT, self._on_pars_changed)
560
561	# Distance explorator
562	id = wx.NewId()
563	self.distance_explorator_ctl = wx.Button(self, id, "Explore")
564	self.Bind(wx.EVT_BUTTON, self._on_explore, id = id)
565
566
567	sizer_params = wx.GridBagSizer(5,5)
568
569	iy = 0
570	sizer_params.Add(self.label_sugg, (iy, 2), (1, 1), wx.LEFT, 15)
571	iy += 1
572	sizer_params.Add(label_nfunc, (iy, 0), (1, 1), wx.LEFT, 15)
573	sizer_params.Add(self.nfunc_ctl, (iy, 1), (1, 1), wx.RIGHT, 0)
574	sizer_params.Add(self.nterms_estimate_ctl, (iy, 2), (1, 1), wx.LEFT, 15)
575	iy += 1
576	sizer_params.Add(label_alpha, (iy, 0), (1, 1), wx.LEFT, 15)
577	sizer_params.Add(self.alpha_ctl, (iy, 1), (1, 1), wx.RIGHT, 0)
578	sizer_params.Add(self.alpha_estimate_ctl, (iy, 2), (1, 1), wx.LEFT, 15)
579	iy += 1
580	sizer_params.Add(label_dmax, (iy, 0), (1, 1), wx.LEFT, 15)
581	sizer_params.Add(self.dmax_ctl, (iy, 1), (1, 1), wx.RIGHT, 0)
582	sizer_params.Add(self.distance_explorator_ctl, (iy, 2),
583	(1, 1), wx.LEFT, 15)
584
585	boxsizer2.Add(sizer_params, 0)
586
587	iy_vb += 1
588	vbox.Add(boxsizer2, (iy_vb, 0), (1, 1),
589	wx.LEFT\|wx.RIGHT\|wx.EXPAND\|wx.ADJUST_MINSIZE, 5)
590
591
592	# ----- Results -----
593	resbox = wx.StaticBox(self, -1, "Outputs")
594	ressizer = wx.StaticBoxSizer(resbox, wx.VERTICAL)
595	ressizer.SetMinSize((self._default_width, 50))
596
597	label_rg = wx.StaticText(self, -1, "Rg")
598	label_rg_unit = wx.StaticText(self, -1, "[A]")
599	label_iq0 = wx.StaticText(self, -1, "I(Q=0)")
600	label_iq0_unit = wx.StaticText(self, -1, "[A^(-1)]")
601	label_bck = wx.StaticText(self, -1, "Background")
602	label_bck_unit = wx.StaticText(self, -1, "[A^(-1)]")
603	self.rg_ctl = OutputTextCtrl(self, -1, size=(60,20))
604	hint_msg = "Radius of gyration for the computed P(r)."
605	self.rg_ctl.SetToolTipString(hint_msg)
606	self.iq0_ctl = OutputTextCtrl(self, -1, size=(60, 20))
607	hint_msg = "Scattering intensity at Q=0 for the computed P(r)."
608	self.iq0_ctl.SetToolTipString(hint_msg)
609	self.bck_ctl = OutputTextCtrl(self, -1, size=(60, 20))
610	self.bck_ctl.SetToolTipString("Value of estimated constant background.")
611
612	label_time = wx.StaticText(self, -1, "Computation time")
613	label_time_unit = wx.StaticText(self, -1, "secs")
614	label_time.SetMinSize((120,20))
615	label_chi2 = wx.StaticText(self, -1, "Chi2/dof")
616	label_osc = wx.StaticText(self, -1, "Oscillations")
617	label_pos = wx.StaticText(self, -1, "Positive fraction")
618	label_pos_err = wx.StaticText(self, -1, "1-sigma positive fraction")
619
620	self.time_ctl = OutputTextCtrl(self, -1, size=(60, 20))
621	hint_msg = "Computation time for the last inversion, in seconds."
622	self.time_ctl.SetToolTipString(hint_msg)
623
624	self.chi2_ctl = OutputTextCtrl(self, -1, size=(60, 20))
625	self.chi2_ctl.SetToolTipString("Chi^2 over degrees of freedom.")
626
627	# Oscillation parameter
628	self.osc_ctl = OutputTextCtrl(self, -1, size=(60, 20))
629	hint_msg = "Oscillation parameter. P(r) for a sphere has an "
630	hint_msg += " oscillation parameter of 1.1."
631	self.osc_ctl.SetToolTipString(hint_msg)
632
633	# Positive fraction figure of merit
634	self.pos_ctl = OutputTextCtrl(self, -1, size=(60, 20))
635	hint_msg = "Fraction of P(r) that is positive. "
636	hint_msg += "Theoretically, P(r) is defined positive."
637	self.pos_ctl.SetToolTipString(hint_msg)
638
639	# 1-simga positive fraction figure of merit
640	self.pos_err_ctl = OutputTextCtrl(self, -1, size=(60, 20))
641	message = "Fraction of P(r) that is at least 1 standard deviation"
642	message += " greater than zero.\n"
643	message += "This figure of merit tells you about the size of the "
644	message += "P(r) errors.\n"
645	message += "If it is close to 1 and the other figures of merit are bad,"
646	message += " consider changing the maximum distance."
647	self.pos_err_ctl.SetToolTipString(message)
648
649	sizer_res = wx.GridBagSizer(5, 5)
650
651	iy = 0
652	sizer_res.Add(label_rg, (iy, 0), (1, 1), wx.LEFT\|wx.EXPAND, 15)
653	sizer_res.Add(self.rg_ctl, (iy, 1), (1, 1), wx.RIGHT\|wx.EXPAND, 15)
654	sizer_res.Add(label_rg_unit, (iy, 2), (1, 1), wx.RIGHT\|wx.EXPAND, 15)
655	iy += 1
656	sizer_res.Add(label_iq0, (iy, 0), (1, 1), wx.LEFT\|wx.EXPAND, 15)
657	sizer_res.Add(self.iq0_ctl, (iy, 1), (1, 1), wx.RIGHT\|wx.EXPAND, 15)
658	sizer_res.Add(label_iq0_unit, (iy, 2), (1, 1), wx.RIGHT\|wx.EXPAND, 15)
659	iy += 1
660	sizer_res.Add(label_bck, (iy, 0), (1, 1), wx.LEFT\|wx.EXPAND, 15)
661	sizer_res.Add(self.bck_ctl, (iy, 1), (1, 1), wx.RIGHT\|wx.EXPAND, 15)
662	sizer_res.Add(label_bck_unit, (iy, 2), (1, 1), wx.RIGHT\|wx.EXPAND, 15)
663	iy += 1
664	sizer_res.Add(label_time, (iy, 0), (1, 1), wx.LEFT\|wx.EXPAND, 15)
665	sizer_res.Add(self.time_ctl, (iy, 1), (1, 1), wx.RIGHT\|wx.EXPAND, 15)
666	sizer_res.Add(label_time_unit, (iy, 2), (1, 1), wx.RIGHT\|wx.EXPAND, 15)
667	iy += 1
668	sizer_res.Add(label_chi2, (iy, 0), (1, 1), wx.LEFT\|wx.EXPAND, 15)
669	sizer_res.Add(self.chi2_ctl, (iy, 1), (1, 1), wx.RIGHT\|wx.EXPAND, 15)
670	iy += 1
671	sizer_res.Add(label_osc, (iy, 0), (1, 1), wx.LEFT\|wx.EXPAND, 15)
672	sizer_res.Add(self.osc_ctl, (iy, 1), (1, 1), wx.RIGHT\|wx.EXPAND, 15)
673
674	iy += 1
675	sizer_res.Add(label_pos, (iy, 0), (1, 1), wx.LEFT\|wx.EXPAND, 15)
676	sizer_res.Add(self.pos_ctl, (iy, 1), (1, 1), wx.RIGHT\|wx.EXPAND, 15)
677
678	iy += 1
679	sizer_res.Add(label_pos_err, (iy, 0), (1, 1), wx.LEFT\|wx.EXPAND, 15)
680	sizer_res.Add(self.pos_err_ctl, (iy,1), (1, 1), wx.RIGHT\|wx.EXPAND, 15)
681
682	ressizer.Add(sizer_res, 0)
683	iy_vb += 1
684	vbox.Add(ressizer, (iy_vb, 0), (1, 1),
685	wx.LEFT\|wx.RIGHT\|wx.EXPAND\|wx.ADJUST_MINSIZE, 5)
686
687	# ----- Buttons -----
688	id = wx.NewId()
689	button_OK = wx.Button(self, id, "Compute")
690	button_OK.SetToolTipString("Perform P(r) inversion.")
691	self.Bind(wx.EVT_BUTTON, self._on_invert, id = id)
692
693	self._set_reset_flag(True)
694	self._set_save_flag(True)
695	sizer_button = wx.BoxSizer(wx.HORIZONTAL)
696	sizer_button.Add((20, 20), 1, wx.EXPAND\|wx.ADJUST_MINSIZE, 0)
697	sizer_button.Add(button_OK, 0, wx.LEFT\|wx.ADJUST_MINSIZE, 10)
698
699	iy_vb += 1
700	vbox.Add(sizer_button, (iy_vb, 0), (1, 1),
701	wx.EXPAND\|wx.BOTTOM\|wx.TOP\|wx.RIGHT, 10)
702
703	self.Bind(wx.EVT_TEXT_ENTER, self._on_invert)
704
705	self.SetSizer(vbox)
706
707	def _on_accept_alpha(self, evt):
708	"""
709	User has accepted the estimated alpha,
710	set it as part of the input parameters
711	"""
712	try:
713	alpha = self.alpha_estimate_ctl.GetLabel()
714	tmp = float(alpha)
715	self.alpha_ctl.SetValue(alpha)
716	except:
717	# No estimate or bad estimate, either do nothing
718	#import sys
719	print "InversionControl._on_accept_alpha: %s" % sys.exc_value
720	pass
721
722	def _on_accept_nterms(self, evt):
723	"""
724	User has accepted the estimated number of terms,
725	set it as part of the input parameters
726	"""
727	try:
728	nterms = self.nterms_estimate_ctl.GetLabel()
729	tmp = float(nterms)
730	self.nfunc_ctl.SetValue(nterms)
731	except:
732	# No estimate or bad estimate, either do nothing
733	import sys
734	print "InversionControl._on_accept_nterms: %s" % sys.exc_value
735	pass
736
737	def clear_panel(self):
738	"""
739	"""
740	self.plot_data.SetValue("")
741	self.on_reset(event=None)
742
743	def on_reset(self, event=None):
744	"""
745	Resets inversion parameters
746	"""
747	self.nfunc = self._manager.DEFAULT_NFUNC
748	self.d_max = self._manager.DEFAULT_DMAX
749	self.alpha = self._manager.DEFAULT_ALPHA
750	self.qmin_ctl.SetValue("")
751	self.qmax_ctl.SetValue("")
752	self.time_ctl.SetValue("")
753	self.rg_ctl.SetValue("")
754	self.iq0_ctl.SetValue("")
755	self.bck_ctl.SetValue("")
756	self.chi2_ctl.SetValue("")
757	self.osc_ctl.SetValue("")
758	self.pos_ctl.SetValue("")
759	self.pos_err_ctl.SetValue("")
760	self.alpha_estimate_ctl.Enable(False)
761	self.alpha_estimate_ctl.SetLabel("")
762	self.nterms_estimate_ctl.Enable(False)
763	self.nterms_estimate_ctl.SetLabel("")
764	self._on_pars_changed()
765
766	def _on_pars_changed(self, evt=None):
767	"""
768	Called when an input parameter has changed
769	We will estimate the alpha parameter behind the
770	scenes.
771	"""
772	flag, alpha, dmax, nfunc, qmin, qmax, height, width = self._read_pars()
773	has_bck = self.bck_chk.IsChecked()
774
775	# If the pars are valid, estimate alpha
776	if flag:
777	self.nterms_estimate_ctl.Enable(False)
778	self.alpha_estimate_ctl.Enable(False)
779
780	dataset = self.plot_data.GetValue()
781	if dataset is not None and dataset.strip() != "":
782	self._manager.estimate_plot_inversion(alpha=alpha, nfunc=nfunc,
783	d_max=dmax,
784	q_min=qmin, q_max=qmax,
785	bck=has_bck,
786	height=height,
787	width=width)
788
789	def _read_pars(self, evt=None):
790	"""
791	"""
792	alpha = 0
793	nfunc = 5
794	dmax = 120
795	qmin = 0
796	qmax = 0
797	height = 0
798	width = 0
799	flag = True
800	# Read slit height
801	try:
802	height_str = self.sheight_ctl.GetValue()
803	if len(height_str.lstrip().rstrip()) == 0:
804	height = 0
805	else:
806	height = float(height_str)
807	self.sheight_ctl.SetBackgroundColour(wx.WHITE)
808	self.sheight_ctl.Refresh()
809	except:
810	flag = False
811	self.sheight_ctl.SetBackgroundColour("pink")
812	self.sheight_ctl.Refresh()
813
814	# Read slit width
815	try:
816	width_str = self.swidth_ctl.GetValue()
817	if len(width_str.lstrip().rstrip())==0:
818	width = 0
819	else:
820	width = float(width_str)
821	self.swidth_ctl.SetBackgroundColour(wx.WHITE)
822	self.swidth_ctl.Refresh()
823	except:
824	flag = False
825	self.swidth_ctl.SetBackgroundColour("pink")
826	self.swidth_ctl.Refresh()
827
828	# Read alpha
829	try:
830	alpha = float(self.alpha_ctl.GetValue())
831	self.alpha_ctl.SetBackgroundColour(wx.WHITE)
832	self.alpha_ctl.Refresh()
833	except:
834	flag = False
835	self.alpha_ctl.SetBackgroundColour("pink")
836	self.alpha_ctl.Refresh()
837
838	# Read d_max
839	try:
840	dmax = float(self.dmax_ctl.GetValue())
841	self.dmax_ctl.SetBackgroundColour(wx.WHITE)
842	self.dmax_ctl.Refresh()
843	except:
844	flag = False
845	self.dmax_ctl.SetBackgroundColour("pink")
846	self.dmax_ctl.Refresh()
847
848	# Read nfunc
849	try:
850	nfunc = int(self.nfunc_ctl.GetValue())
851	npts = self._manager.get_npts()
852	if npts > 0 and nfunc > npts:
853	message = "Number of function terms should be smaller "
854	message += "than the number of points"
855	wx.PostEvent(self._manager.parent, StatusEvent(status=message))
856	raise ValueError, message
857	self.nfunc_ctl.SetBackgroundColour(wx.WHITE)
858	self.nfunc_ctl.Refresh()
859	except:
860	flag = False
861	self.nfunc_ctl.SetBackgroundColour("pink")
862	self.nfunc_ctl.Refresh()
863
864	# Read qmin
865	try:
866	qmin_str = self.qmin_ctl.GetValue()
867	if len(qmin_str.lstrip().rstrip()) == 0:
868	qmin = None
869	else:
870	qmin = float(qmin_str)
871	self.qmin_ctl.SetBackgroundColour(wx.WHITE)
872	self.qmin_ctl.Refresh()
873	except:
874	flag = False
875	self.qmin_ctl.SetBackgroundColour("pink")
876	self.qmin_ctl.Refresh()
877
878	# Read qmax
879	try:
880	qmax_str = self.qmax_ctl.GetValue()
881	if len(qmax_str.lstrip().rstrip()) == 0:
882	qmax = None
883	else:
884	qmax = float(qmax_str)
885	self.qmax_ctl.SetBackgroundColour(wx.WHITE)
886	self.qmax_ctl.Refresh()
887	except:
888	flag = False
889	self.qmax_ctl.SetBackgroundColour("pink")
890	self.qmax_ctl.Refresh()
891
892	return flag, alpha, dmax, nfunc, qmin, qmax, height, width
893
894	def _on_explore(self, evt):
895	"""
896	Invoke the d_max exploration dialog
897	"""
898	from explore_dialog import ExploreDialog
899	if self._manager._last_pr is not None:
900	pr = self._manager._create_plot_pr()
901	dialog = ExploreDialog(pr, 10, None, -1, "")
902	dialog.ShowModal()
903	else:
904	message = "No data to analyze. Please load a data set to proceed."
905	wx.PostEvent(self._manager.parent, StatusEvent(status=message))
906
907	def _on_invert(self, evt):
908	"""
909	Perform inversion
910
911	:param silent: when True, there will be no output for the user
912
913	"""
914	# Get the data from the form
915	# Push it to the manager
916
917	flag, alpha, dmax, nfunc, qmin, qmax, height, width = self._read_pars()
918	has_bck = self.bck_chk.IsChecked()
919
920	if flag:
921	dataset = self.plot_data.GetValue()
922	if dataset==None or len(dataset.strip())==0:
923	message = "No data to invert. Select a data set before"
924	message += " proceeding with P(r) inversion."
925	wx.PostEvent(self._manager.parent, StatusEvent(status=message))
926	else:
927	self._manager.setup_plot_inversion(alpha=alpha, nfunc=nfunc,
928	d_max=dmax,
929	q_min=qmin, q_max=qmax,
930	bck=has_bck,
931	height=height,
932	width=width)
933	else:
934	message = "The P(r) form contains invalid values: "
935	message += "please submit it again."
936	wx.PostEvent(self.parent, StatusEvent(status=message))
937
938	def _change_file(self, evt=None, filepath=None, data=None):
939	"""
940	Choose a new input file for I(q)
941	"""
942	if not self._manager is None:
943	self.plot_data.SetValue(str(data.name))
944	try:
945	self._manager.show_data(data=data, reset=True)
946	self._on_pars_changed(None)
947	self._on_invert(None)
948	except:
949	msg = "InversionControl._change_file: %s" % sys.exc_value
950	logging.error(msg)
951
952	class HelpDialog(wx.Dialog):
953	"""
954	"""
955	def __init__(self, parent, id):
956	"""
957	"""
958	from sans.pr.invertor import help
959	wx.Dialog.__init__(self, parent, id, size=(400, 420))
960	self.SetTitle("P(r) help")
961
962
963	vbox = wx.BoxSizer(wx.VERTICAL)
964
965	explanation = help()
966
967	label_explain = wx.StaticText(self, -1, explanation, size=(350, 320))
968
969	vbox.Add(label_explain, 0, wx.ALL\|wx.EXPAND, 15)
970
971
972	static_line = wx.StaticLine(self, -1)
973	vbox.Add(static_line, 0, wx.EXPAND, 0)
974
975	button_OK = wx.Button(self, wx.ID_OK, "OK")
976	#button_Cancel = wx.Button(self, wx.ID_CANCEL, "Cancel")
977
978	sizer_button = wx.BoxSizer(wx.HORIZONTAL)
979	sizer_button.Add((20, 20), 1, wx.EXPAND\|wx.ADJUST_MINSIZE, 0)
980	sizer_button.Add(button_OK, 0, wx.LEFT\|wx.RIGHT\|wx.ADJUST_MINSIZE, 10)
981
982	vbox.Add(sizer_button, 0, wx.EXPAND\|wx.BOTTOM\|wx.TOP, 10)
983
984	self.SetSizer(vbox)
985	self.SetAutoLayout(True)
986
987	self.Layout()
988	self.Centre()
989
990	class PrDistDialog(wx.Dialog):
991	"""
992	Property dialog to let the user change the number
993	of points on the P(r) plot.
994	"""
995	def __init__(self, parent, id):
996	from sans.pr.invertor import help
997	wx.Dialog.__init__(self, parent, id, size=(250, 120))
998	self.SetTitle("P(r) distribution")
999
1000
1001	vbox = wx.BoxSizer(wx.VERTICAL)
1002
1003	label_npts = wx.StaticText(self, -1, "Number of points")
1004	self.npts_ctl = PrTextCtrl(self, -1, size=(100, 20))
1005
1006	pars_sizer = wx.GridBagSizer(5, 5)
1007	iy = 0
1008	pars_sizer.Add(label_npts, (iy, 0), (1, 1), wx.LEFT, 15)
1009	pars_sizer.Add(self.npts_ctl, (iy, 1), (1, 1), wx.RIGHT, 0)
1010
1011	vbox.Add(pars_sizer, 0, wx.ALL\|wx.EXPAND, 15)
1012
1013	static_line = wx.StaticLine(self, -1)
1014	vbox.Add(static_line, 0, wx.EXPAND, 0)
1015
1016	button_OK = wx.Button(self, wx.ID_OK, "OK")
1017	self.Bind(wx.EVT_BUTTON, self._checkValues, button_OK)
1018	button_Cancel = wx.Button(self, wx.ID_CANCEL, "Cancel")
1019
1020	sizer_button = wx.BoxSizer(wx.HORIZONTAL)
1021	sizer_button.Add((20, 20), 1, wx.EXPAND\|wx.ADJUST_MINSIZE, 0)
1022	sizer_button.Add(button_OK, 0, wx.LEFT\|wx.RIGHT\|wx.ADJUST_MINSIZE, 10)
1023	sizer_button.Add(button_Cancel, 0,
1024	wx.LEFT\|wx.RIGHT\|wx.ADJUST_MINSIZE, 10)
1025	vbox.Add(sizer_button, 0, wx.EXPAND\|wx.BOTTOM\|wx.TOP, 10)
1026
1027	self.SetSizer(vbox)
1028	self.SetAutoLayout(True)
1029
1030	self.Layout()
1031	self.Centre()
1032
1033	def _checkValues(self, event):
1034	"""
1035	Check the dialog content.
1036	"""
1037	flag = True
1038	try:
1039	int(self.npts_ctl.GetValue())
1040	self.npts_ctl.SetBackgroundColour(wx.WHITE)
1041	self.npts_ctl.Refresh()
1042	except:
1043	flag = False
1044	self.npts_ctl.SetBackgroundColour("pink")
1045	self.npts_ctl.Refresh()
1046	if flag:
1047	event.Skip(True)
1048
1049	def get_content(self):
1050	"""
1051	Return the content of the dialog.
1052	At this point the values have already been
1053	checked.
1054	"""
1055	value = int(self.npts_ctl.GetValue())
1056	return value
1057
1058	def set_content(self, npts):
1059	"""
1060	Initialize the content of the dialog.
1061	"""
1062	self.npts_ctl.SetValue("%i" % npts)
1063
1064	##### testing code ############################################################
1065	"""
1066	Example: ::
1067
1068	class TestPlot:
1069	def __init__(self, text):
1070	self.name = text
1071
1072	class MyApp(wx.App):
1073	def OnInit(self):
1074	wx.InitAllImageHandlers()
1075	dialog = PrDistDialog(None, -1)
1076	if dialog.ShowModal() == wx.ID_OK:
1077	pass
1078	dialog.Destroy()
1079
1080	return 1
1081
1082	# end of class MyApp
1083
1084	if __name__ == "__main__":
1085	app = MyApp(0)
1086	app.MainLoop()
1087
1088	"""
1089	##### end of testing code #####################################################

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SasView

source: sasview/inversionview/src/sans/perspectives/pr/inversion_panel.py @ 632adc4

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