[2bf92f2] | 1 | """Prototype plottable object support. |
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| 2 | |
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| 3 | The main point of this prototype is to provide a clean separation between |
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| 4 | the style (plotter details: color, grids, widgets, etc.) and substance |
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| 5 | (application details: which information to plot). Programmers should not be |
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| 6 | dictating line colours and plotting symbols. |
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| 7 | |
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| 8 | Unlike the problem of style in CSS or Word, where most paragraphs look |
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| 9 | the same, each line on a graph has to be distinguishable from its neighbours. |
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| 10 | Our solution is to provide parametric styles, in which a number of |
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| 11 | different classes of object (e.g., reflectometry data, reflectometry |
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| 12 | theory) representing multiple graph primitives cycle through a colour |
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| 13 | palette provided by the underlying plotter. |
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| 14 | |
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| 15 | A full treatment would provide perceptual dimensions of prominence and |
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| 16 | distinctiveness rather than a simple colour number. |
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| 17 | """ |
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| 18 | |
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| 19 | # Design question: who owns the color? |
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| 20 | # Is it a property of the plottable? |
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| 21 | # Or of the plottable as it exists on the graph? |
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| 22 | # Or if the graph? |
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| 23 | # If a plottable can appear on multiple graphs, in some case the |
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| 24 | # color should be the same on each graph in which it appears, and |
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| 25 | # in other cases (where multiple plottables from different graphs |
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| 26 | # coexist), the color should be assigned by the graph. In any case |
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| 27 | # once a plottable is placed on the graph its color should not |
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| 28 | # depend on the other plottables on the graph. Furthermore, if |
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| 29 | # a plottable is added and removed from a graph and added again, |
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| 30 | # it may be nice, but not necessary, to have the color persist. |
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| 31 | # |
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| 32 | # The safest approach seems to be to give ownership of color |
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| 33 | # to the graph, which will allocate the colors along with the |
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| 34 | # plottable. The plottable will need to return the number of |
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| 35 | # colors that are needed. |
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| 36 | # |
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| 37 | # The situation is less clear for symbols. It is less clear |
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| 38 | # how much the application requires that symbols be unique across |
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| 39 | # all plots on the graph. |
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| 40 | |
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| 41 | # Support for ancient python versions |
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[8e44d51] | 42 | import copy |
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| 43 | import numpy |
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[f193585] | 44 | import math |
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[a17ffdf] | 45 | import sys |
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[8e44d51] | 46 | |
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[2bf92f2] | 47 | if 'any' not in dir(__builtins__): |
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| 48 | def any(L): |
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| 49 | for cond in L: |
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| 50 | if cond: return True |
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| 51 | return False |
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| 52 | def all(L): |
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| 53 | for cond in L: |
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| 54 | if not cond: return False |
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| 55 | return True |
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[b43a009] | 56 | |
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[2bf92f2] | 57 | # Graph structure for holding multiple plottables |
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| 58 | class Graph: |
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| 59 | """ |
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| 60 | Generic plottables graph structure. |
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| 61 | |
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| 62 | Plot styles are based on color/symbol lists. The user gets to select |
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| 63 | the list of colors/symbols/sizes to choose from, not the application |
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| 64 | developer. The programmer only gets to add/remove lines from the |
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| 65 | plot and move to the next symbol/color. |
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| 66 | |
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| 67 | Another dimension is prominence, which refers to line sizes/point sizes. |
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| 68 | |
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| 69 | Axis transformations allow the user to select the coordinate view |
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| 70 | which provides clarity to the data. There is no way we can provide |
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| 71 | every possible transformation for every application generically, so |
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| 72 | the plottable objects themselves will need to provide the transformations. |
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| 73 | Here are some examples from reflectometry: |
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| 74 | independent: x -> f(x) |
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| 75 | monitor scaling: y -> M*y |
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| 76 | log: y -> log(y if y > min else min) |
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| 77 | cos: y -> cos(y*pi/180) |
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| 78 | dependent: x -> f(x,y) |
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| 79 | Q4: y -> y*x^4 |
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| 80 | fresnel: y -> y*fresnel(x) |
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| 81 | coordinated: x,y = f(x,y) |
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| 82 | Q: x -> 2*pi/L (cos(x*pi/180) - cos(y*pi/180)) |
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| 83 | y -> 2*pi/L (sin(x*pi/180) + sin(y*pi/180)) |
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| 84 | reducing: x,y = f(x1,x2,y1,y2) |
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| 85 | spin asymmetry: x -> x1, y -> (y1 - y2)/(y1 + y2) |
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| 86 | vector net: x -> x1, y -> y1*cos(y2*pi/180) |
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| 87 | Multiple transformations are possible, such as Q4 spin asymmetry |
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| 88 | |
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| 89 | Axes have further complications in that the units of what are being |
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| 90 | plotted should correspond to the units on the axes. Plotting multiple |
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| 91 | types on the same graph should be handled gracefully, e.g., by creating |
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| 92 | a separate tab for each available axis type, breaking into subplots, |
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| 93 | showing multiple axes on the same plot, or generating inset plots. |
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| 94 | Ultimately the decision should be left to the user. |
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| 95 | |
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| 96 | Graph properties such as grids/crosshairs should be under user control, |
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| 97 | as should the sizes of items such as axis fonts, etc. No direct |
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| 98 | access will be provided to the application. |
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| 99 | |
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| 100 | Axis limits are mostly under user control. If the user has zoomed or |
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| 101 | panned then those limits are preserved even if new data is plotted. |
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| 102 | The exception is when, e.g., scanning through a set of related lines |
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| 103 | in which the user may want to fix the limits so that user can compare |
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| 104 | the values directly. Another exception is when creating multiple |
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| 105 | graphs sharing the same limits, though this case may be important |
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| 106 | enough that it is handled by the graph widget itself. Axis limits |
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| 107 | will of course have to understand the effects of axis transformations. |
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| 108 | |
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| 109 | High level plottable objects may be composed of low level primitives. |
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| 110 | Operations such as legend/hide/show copy/paste, etc. need to operate |
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| 111 | on these primitives as a group. E.g., allowing the user to have a |
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| 112 | working canvas where they can drag lines they want to save and annotate |
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| 113 | them. |
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| 114 | |
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| 115 | Graphs need to be printable. A page layout program for entire plots |
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| 116 | would be nice. |
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| 117 | """ |
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| 118 | def xaxis(self,name,units): |
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| 119 | """Properties of the x axis. |
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| 120 | """ |
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| 121 | if self.prop["xunit"] and units != self.prop["xunit"]: |
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| 122 | pass |
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| 123 | #print "Plottable: how do we handle non-commensurate units" |
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| 124 | self.prop["xlabel"] = "%s (%s)"%(name,units) |
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| 125 | self.prop["xunit"] = units |
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| 126 | |
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| 127 | def yaxis(self,name,units): |
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| 128 | """Properties of the y axis. |
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| 129 | """ |
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[057210c] | 130 | if self.prop["yunit"] and units != self.prop["yunit"]: |
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[2bf92f2] | 131 | pass |
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| 132 | #print "Plottable: how do we handle non-commensurate units" |
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| 133 | self.prop["ylabel"] = "%s (%s)"%(name,units) |
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[057210c] | 134 | self.prop["yunit"] = units |
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[2bf92f2] | 135 | |
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| 136 | def title(self,name): |
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| 137 | """Graph title |
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| 138 | """ |
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| 139 | self.prop["title"] = name |
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| 140 | |
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| 141 | def get(self,key): |
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| 142 | """Get the graph properties""" |
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| 143 | if key=="color": |
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| 144 | return self.color |
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| 145 | elif key == "symbol": |
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| 146 | return self.symbol |
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| 147 | else: |
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| 148 | return self.prop[key] |
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| 149 | |
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| 150 | def set(self,**kw): |
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| 151 | """Set the graph properties""" |
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| 152 | for key in kw: |
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| 153 | if key == "color": |
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| 154 | self.color = kw[key]%len(self.colorlist) |
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| 155 | elif key == "symbol": |
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| 156 | self.symbol = kw[key]%len(self.symbollist) |
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| 157 | else: |
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| 158 | self.prop[key] = kw[key] |
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| 159 | |
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| 160 | def isPlotted(self, plottable): |
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| 161 | """Return True is the plottable is already on the graph""" |
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| 162 | if plottable in self.plottables: |
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| 163 | return True |
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| 164 | return False |
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| 165 | |
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| 166 | def add(self,plottable): |
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| 167 | """Add a new plottable to the graph""" |
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| 168 | # record the colour associated with the plottable |
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| 169 | if not plottable in self.plottables: |
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| 170 | self.plottables[plottable]=self.color |
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| 171 | self.color += plottable.colors() |
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| 172 | |
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| 173 | def changed(self): |
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| 174 | """Detect if any graphed plottables have changed""" |
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| 175 | return any([p.changed() for p in self.plottables]) |
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[052a66bc] | 176 | |
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| 177 | def get_range(self): |
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| 178 | """ |
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| 179 | Return the range of all displayed plottables |
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| 180 | """ |
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| 181 | min = None |
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| 182 | max = None |
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| 183 | |
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| 184 | for p in self.plottables: |
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| 185 | if p.hidden==True: |
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| 186 | continue |
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| 187 | |
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| 188 | if not p.x==None: |
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| 189 | for x_i in p.x: |
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| 190 | if min==None or x_i<min: |
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| 191 | min = x_i |
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| 192 | if max==None or x_i>max: |
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| 193 | max = x_i |
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| 194 | |
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| 195 | return min, max |
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[2bf92f2] | 196 | |
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| 197 | def delete(self,plottable): |
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| 198 | """Remove an existing plottable from the graph""" |
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| 199 | if plottable in self.plottables: |
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| 200 | del self.plottables[plottable] |
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[a17ffdf] | 201 | if self.color > 0: |
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| 202 | self.color = self.color -1 |
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| 203 | else: |
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| 204 | self.color =0 |
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[f193585] | 205 | |
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[052a66bc] | 206 | def reset_scale(self): |
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| 207 | """ |
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| 208 | Resets the scale transformation data to the underlying data |
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| 209 | """ |
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| 210 | for p in self.plottables: |
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| 211 | p.reset_view() |
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[2bf92f2] | 212 | |
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| 213 | def reset(self): |
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| 214 | """Reset the graph.""" |
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| 215 | self.color = 0 |
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| 216 | self.symbol = 0 |
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| 217 | self.prop = {"xlabel":"", "xunit":None, |
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| 218 | "ylabel":"","yunit":None, |
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| 219 | "title":""} |
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| 220 | self.plottables = {} |
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[b43a009] | 221 | |
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| 222 | |
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[2bf92f2] | 223 | def _make_labels(self): |
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| 224 | # Find groups of related plottables |
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| 225 | sets = {} |
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| 226 | for p in self.plottables: |
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| 227 | if p.__class__ in sets: |
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| 228 | sets[p.__class__].append(p) |
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| 229 | else: |
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| 230 | sets[p.__class__] = [p] |
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| 231 | |
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| 232 | # Ask each plottable class for a set of unique labels |
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| 233 | labels = {} |
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| 234 | for c in sets: |
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| 235 | labels.update(c.labels(sets[c])) |
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| 236 | |
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| 237 | return labels |
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[52b1f77] | 238 | |
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[4972de2] | 239 | def get_plottable(self, name): |
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| 240 | """ |
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| 241 | Return the plottable with the given |
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| 242 | name if it exists. Otherwise return None |
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| 243 | """ |
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| 244 | for item in self.plottables: |
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| 245 | if item.name==name: |
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| 246 | return item |
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| 247 | return None |
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| 248 | |
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[6cfe703] | 249 | def returnPlottable(self): |
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[b43a009] | 250 | """ |
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| 251 | This method returns a dictionary of plottables contained in graph |
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| 252 | It is just by Plotpanel to interact with the complete list of plottables |
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| 253 | inside the graph. |
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| 254 | """ |
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[6cfe703] | 255 | return self.plottables |
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[2bf92f2] | 256 | |
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| 257 | def render(self,plot): |
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| 258 | """Redraw the graph""" |
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[4972de2] | 259 | plot.connect.clearall() |
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| 260 | |
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[2bf92f2] | 261 | plot.clear() |
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| 262 | plot.properties(self.prop) |
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| 263 | labels = self._make_labels() |
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| 264 | for p in self.plottables: |
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| 265 | p.render(plot,color=self.plottables[p],symbol=0,label=labels[p]) |
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| 266 | plot.render() |
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[46693050] | 267 | |
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[b43a009] | 268 | |
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[2bf92f2] | 269 | |
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| 270 | def __init__(self,**kw): |
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| 271 | self.reset() |
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| 272 | self.set(**kw) |
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[4972de2] | 273 | |
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| 274 | # Name of selected plottable, if any |
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| 275 | self.selected_plottable = None |
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[2bf92f2] | 276 | |
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| 277 | |
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| 278 | # Transform interface definition |
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| 279 | # No need to inherit from this class, just need to provide |
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| 280 | # the same methods. |
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| 281 | class Transform: |
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| 282 | """Define a transform plugin to the plottable architecture. |
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| 283 | |
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| 284 | Transforms operate on axes. The plottable defines the |
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| 285 | set of transforms available for it, and the axes on which |
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| 286 | they operate. These transforms can operate on the x axis |
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| 287 | only, the y axis only or on the x and y axes together. |
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| 288 | |
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| 289 | This infrastructure is not able to support transformations |
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| 290 | such as log and polar plots as these require full control |
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| 291 | over the drawing of axes and grids. |
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| 292 | |
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| 293 | A transform has a number of attributes. |
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| 294 | |
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| 295 | name: user visible name for the transform. This will |
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| 296 | appear in the context menu for the axis and the transform |
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| 297 | menu for the graph. |
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| 298 | type: operational axis. This determines whether the |
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| 299 | transform should appear on x,y or z axis context |
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| 300 | menus, or if it should appear in the context menu for |
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| 301 | the graph. |
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| 302 | inventory: (not implemented) |
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| 303 | a dictionary of user settable parameter names and |
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| 304 | their associated types. These should appear as keyword |
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| 305 | arguments to the transform call. For example, Fresnel |
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| 306 | reflectivity requires the substrate density: |
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| 307 | { 'rho': type.Value(10e-6/units.angstrom**2) } |
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| 308 | Supply reasonable defaults in the callback so that |
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| 309 | limited plotting clients work even though they cannot |
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| 310 | set the inventory. |
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| 311 | """ |
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| 312 | |
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| 313 | def __call__(self,plottable,**kwargs): |
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| 314 | """Transform the data. Whenever a plottable is added |
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| 315 | to the axes, the infrastructure will apply all required |
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| 316 | transforms. When the user selects a different representation |
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| 317 | for the axes (via menu, script, or context menu), all |
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| 318 | plottables on the axes will be transformed. The |
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| 319 | plottable should store the underlying data but set |
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| 320 | the standard x,dx,y,dy,z,dz attributes appropriately. |
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| 321 | |
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| 322 | If the call raises a NotImplemented error the dataline |
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| 323 | will not be plotted. The associated string will usually |
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| 324 | be 'Not a valid transform', though other strings are possible. |
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| 325 | The application may or may not display the message to the |
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| 326 | user, along with an indication of which plottable was at fault. |
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| 327 | """ |
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| 328 | raise NotImplemented,"Not a valid transform" |
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| 329 | |
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| 330 | # Related issues |
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| 331 | # ============== |
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| 332 | # |
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| 333 | # log scale: |
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| 334 | # All axes have implicit log/linear scaling options. |
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| 335 | # |
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| 336 | # normalization: |
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| 337 | # Want to display raw counts vs detector efficiency correction |
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| 338 | # Want to normalize by time/monitor/proton current/intensity. |
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| 339 | # Want to display by eg. counts per 3 sec or counts per 10000 monitor. |
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| 340 | # Want to divide by footprint (ab initio, fitted or measured). |
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| 341 | # Want to scale by attenuator values. |
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| 342 | # |
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| 343 | # compare/contrast: |
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| 344 | # Want to average all visible lines with the same tag, and |
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| 345 | # display difference from one particular line. Not a transform |
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| 346 | # issue? |
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| 347 | # |
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| 348 | # multiline graph: |
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| 349 | # How do we show/hide data parts. E.g., data or theory, or |
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| 350 | # different polarization cross sections? One way is with |
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| 351 | # tags: each plottable has a set of tags and the tags are |
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| 352 | # listed as check boxes above the plotting area. Click a |
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| 353 | # tag and all plottables with that tag are hidden on the |
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| 354 | # plot and on the legend. |
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| 355 | # |
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| 356 | # nonconformant y-axes: |
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| 357 | # What do we do with temperature vs. Q and reflectivity vs. Q |
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| 358 | # on the same graph? |
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| 359 | # |
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| 360 | # 2D -> 1D: |
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| 361 | # Want various slices through the data. Do transforms apply |
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| 362 | # to the sliced data as well? |
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| 363 | |
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| 364 | |
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[052a66bc] | 365 | class Plottable(object): |
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| 366 | |
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| 367 | # Short ascii name to refer to the plottable in a menu |
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| 368 | short_name = None |
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| 369 | |
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[4972de2] | 370 | # Fancy name |
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| 371 | name = None |
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| 372 | |
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[052a66bc] | 373 | # Data |
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| 374 | x = None |
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| 375 | y = None |
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| 376 | dx = None |
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| 377 | dy = None |
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| 378 | |
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| 379 | # Parameter to allow a plot to be part of the list without being displayed |
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| 380 | hidden = False |
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[4972de2] | 381 | |
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| 382 | # Flag to set whether a plottable has an interactor or not |
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| 383 | interactive = True |
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[052a66bc] | 384 | |
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| 385 | def __setattr__(self, name, value): |
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| 386 | """ |
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| 387 | Take care of changes in View when data is changed. |
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| 388 | This method is provided for backward compatibility. |
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| 389 | """ |
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| 390 | object.__setattr__(self, name, value) |
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| 391 | |
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| 392 | if name in ['x', 'y', 'dx', 'dy']: |
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| 393 | self.reset_view() |
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| 394 | #print "self.%s has been called" % name |
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| 395 | |
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| 396 | def set_data(self, x, y, dx=None, dy=None): |
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| 397 | self.x = x |
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| 398 | self.y = y |
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| 399 | self.dy = dy |
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| 400 | self.dx = dx |
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| 401 | self.transformView() |
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| 402 | |
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[2bf92f2] | 403 | def xaxis(self, name, units): |
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[370e587] | 404 | """ |
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| 405 | Set the name and unit of x_axis |
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| 406 | @param name: the name of x-axis |
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| 407 | @param units : the units of x_axis |
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| 408 | """ |
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[2bf92f2] | 409 | self._xaxis = name |
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| 410 | self._xunit = units |
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| 411 | |
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| 412 | def yaxis(self, name, units): |
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[370e587] | 413 | """ |
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| 414 | Set the name and unit of y_axis |
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| 415 | @param name: the name of y-axis |
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| 416 | @param units : the units of y_axis |
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| 417 | """ |
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[2bf92f2] | 418 | self._yaxis = name |
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| 419 | self._yunit = units |
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[370e587] | 420 | |
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[5789654] | 421 | def get_xaxis(self): |
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[370e587] | 422 | """ Return the units and name of x-axis""" |
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[5789654] | 423 | return self._xaxis, self._xunit |
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[370e587] | 424 | |
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[5789654] | 425 | def get_yaxis(self): |
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[370e587] | 426 | """ Return the units and name of y- axis""" |
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[5789654] | 427 | return self._yaxis, self._yunit |
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[2bf92f2] | 428 | |
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| 429 | @classmethod |
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| 430 | def labels(cls,collection): |
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| 431 | """ |
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| 432 | Construct a set of unique labels for a collection of plottables of |
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| 433 | the same type. |
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| 434 | |
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| 435 | Returns a map from plottable to name. |
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| 436 | """ |
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| 437 | n = len(collection) |
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| 438 | map = {} |
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| 439 | if n > 0: |
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| 440 | basename = str(cls).split('.')[-1] |
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| 441 | if n == 1: |
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| 442 | map[collection[0]] = basename |
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| 443 | else: |
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| 444 | for i in xrange(len(collection)): |
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| 445 | map[collection[i]] = "%s %d"%(basename,i) |
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| 446 | return map |
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| 447 | ##Use the following if @classmethod doesn't work |
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| 448 | # labels = classmethod(labels) |
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[b43a009] | 449 | def setLabel(self,labelx,labely): |
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| 450 | """ |
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| 451 | It takes a label of the x and y transformation and set View parameters |
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| 452 | @param transx: The label of x transformation is sent by Properties Dialog |
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| 453 | @param transy: The label of y transformation is sent Properties Dialog |
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| 454 | """ |
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| 455 | self.view.xLabel= labelx |
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| 456 | self.view.yLabel = labely |
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[f193585] | 457 | |
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[2bf92f2] | 458 | def __init__(self): |
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[6cfe703] | 459 | self.view = View() |
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[5789654] | 460 | self._xaxis = "" |
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| 461 | self._xunit = "" |
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| 462 | self._yaxis = "" |
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| 463 | self._yunit = "" |
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| 464 | |
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[bbec827] | 465 | |
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[52b1f77] | 466 | def set_View(self,x,y): |
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[8cebf9b] | 467 | """ Load View """ |
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[52b1f77] | 468 | self.x= x |
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| 469 | self.y = y |
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| 470 | self.reset_view() |
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| 471 | |
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| 472 | def reset_view(self): |
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[8cebf9b] | 473 | """ Reload view with new value to plot""" |
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[52b1f77] | 474 | self.view = self.View(self.x, self.y, self.dx, self.dy) |
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[34ae302] | 475 | self.view.Xreel = self.view.x |
---|
| 476 | self.view.Yreel = self.view.y |
---|
| 477 | self.view.DXreel = self.view.dx |
---|
| 478 | self.view.DYreel = self.view.dy |
---|
[2bf92f2] | 479 | def render(self,plot): |
---|
| 480 | """The base class makes sure the correct units are being used for |
---|
| 481 | subsequent plottable. |
---|
| 482 | |
---|
| 483 | For now it is assumed that the graphs are commensurate, and if you |
---|
| 484 | put a Qx object on a Temperature graph then you had better hope |
---|
| 485 | that it makes sense. |
---|
| 486 | """ |
---|
[52b1f77] | 487 | |
---|
[8e4516f] | 488 | plot.xaxis(self._xaxis, self._xunit) |
---|
| 489 | plot.yaxis(self._yaxis, self._yunit) |
---|
[2bf92f2] | 490 | |
---|
[052a66bc] | 491 | def is_empty(self): |
---|
| 492 | """ |
---|
| 493 | Returns True if there is no data stored in the plottable |
---|
| 494 | """ |
---|
| 495 | if not self.x==None and len(self.x)==0 \ |
---|
| 496 | and not self.y==None and len(self.y)==0: |
---|
| 497 | return True |
---|
| 498 | return False |
---|
| 499 | |
---|
| 500 | |
---|
[2bf92f2] | 501 | def colors(self): |
---|
| 502 | """Return the number of colors need to render the object""" |
---|
| 503 | return 1 |
---|
[057210c] | 504 | |
---|
[6ed101a] | 505 | def transformView(self): |
---|
[b43a009] | 506 | """ |
---|
| 507 | It transforms x, y before displaying |
---|
| 508 | """ |
---|
[6ed101a] | 509 | self.view.transform( self.x, self.y, self.dx,self.dy) |
---|
[3d3a0e5] | 510 | |
---|
[5789654] | 511 | def returnValuesOfView(self): |
---|
[b43a009] | 512 | """ |
---|
| 513 | Return View parameters and it is used by Fit Dialog |
---|
| 514 | """ |
---|
[f63f5ff] | 515 | return self.view.returnXview() |
---|
[f193585] | 516 | |
---|
[46693050] | 517 | def check_data_PlottableX(self): |
---|
[b43a009] | 518 | """ |
---|
| 519 | Since no transformation is made for log10(x), check that |
---|
| 520 | no negative values is plot in log scale |
---|
| 521 | """ |
---|
[46693050] | 522 | self.view.check_data_logX() |
---|
[f193585] | 523 | |
---|
[46693050] | 524 | def check_data_PlottableY(self): |
---|
[b43a009] | 525 | """ |
---|
| 526 | Since no transformation is made for log10(y), check that |
---|
| 527 | no negative values is plot in log scale |
---|
| 528 | """ |
---|
[46693050] | 529 | self.view.check_data_logY() |
---|
[34ae302] | 530 | |
---|
[b43a009] | 531 | def transformX(self,transx,transdx): |
---|
| 532 | """ |
---|
| 533 | Receive pointers to function that transform x and dx |
---|
| 534 | and set corresponding View pointers |
---|
| 535 | @param transx: pointer to function that transforms x |
---|
| 536 | @param transdx: pointer to function that transforms dx |
---|
| 537 | """ |
---|
| 538 | self.view.setTransformX(transx,transdx) |
---|
| 539 | |
---|
| 540 | def transformY(self,transy,transdy): |
---|
| 541 | """ |
---|
| 542 | Receive pointers to function that transform y and dy |
---|
| 543 | and set corresponding View pointers |
---|
| 544 | @param transy: pointer to function that transforms y |
---|
| 545 | @param transdy: pointer to function that transforms dy |
---|
| 546 | """ |
---|
| 547 | self.view.setTransformY(transy,transdy) |
---|
[34ae302] | 548 | |
---|
| 549 | def onReset(self): |
---|
[b43a009] | 550 | """ |
---|
| 551 | Reset x, y, dx, dy view with its parameters |
---|
| 552 | """ |
---|
[34ae302] | 553 | self.view.onResetView() |
---|
[b43a009] | 554 | |
---|
[150c04a] | 555 | def onFitRange(self,xmin=None,xmax=None): |
---|
[b43a009] | 556 | """ |
---|
| 557 | It limits View data range to plot from min to max |
---|
| 558 | @param xmin: the minimum value of x to plot. |
---|
| 559 | @param xmax: the maximum value of x to plot |
---|
| 560 | """ |
---|
[34ae302] | 561 | self.view.onFitRangeView(xmin,xmax) |
---|
[b43a009] | 562 | |
---|
[057210c] | 563 | class View: |
---|
| 564 | """ |
---|
| 565 | Representation of the data that might include a transformation |
---|
| 566 | """ |
---|
| 567 | x = None |
---|
| 568 | y = None |
---|
| 569 | dx = None |
---|
| 570 | dy = None |
---|
[ddff053] | 571 | |
---|
[46693050] | 572 | |
---|
[057210c] | 573 | def __init__(self, x=None, y=None, dx=None, dy=None): |
---|
| 574 | self.x = x |
---|
| 575 | self.y = y |
---|
| 576 | self.dx = dx |
---|
| 577 | self.dy = dy |
---|
[b43a009] | 578 | # To change x range to the reel range |
---|
[34ae302] | 579 | self.Xreel = self.x |
---|
| 580 | self.Yreel = self.y |
---|
| 581 | self.DXreel = self.dx |
---|
| 582 | self.DYreel = self.dy |
---|
[b43a009] | 583 | # Labels of x and y received from Properties Dialog |
---|
| 584 | self.xLabel ="" |
---|
| 585 | self.yLabel ="" |
---|
| 586 | # Function to transform x, y, dx and dy |
---|
[f193585] | 587 | self.funcx= None |
---|
| 588 | self.funcy= None |
---|
| 589 | self.funcdx= None |
---|
| 590 | self.funcdy= None |
---|
[052a66bc] | 591 | |
---|
[6ed101a] | 592 | def transform(self, x=None,y=None,dx=None, dy=None): |
---|
[057210c] | 593 | """ |
---|
[b43a009] | 594 | Transforms the x,y,dx and dy vectors and stores the output in View parameters |
---|
| 595 | |
---|
[057210c] | 596 | @param x: array of x values |
---|
[b43a009] | 597 | @param y: array of y values |
---|
| 598 | @param dx: array of errors values on x |
---|
| 599 | @param dy: array of error values on y |
---|
[057210c] | 600 | """ |
---|
[8e44d51] | 601 | |
---|
[057210c] | 602 | # Sanity check |
---|
[b43a009] | 603 | # Do the transofrmation only when x and y are empty |
---|
[052a66bc] | 604 | has_err_x = not (dx==None or len(dx)==0) |
---|
| 605 | has_err_y = not (dy==None or len(dy)==0) |
---|
| 606 | |
---|
[b43a009] | 607 | if (x!=None) and (y!=None): |
---|
[052a66bc] | 608 | if not dx==None and not len(dx)==0 and not len(x)==len(dx): |
---|
[6ed101a] | 609 | raise ValueError, "Plottable.View: Given x and dx are not of the same length" |
---|
| 610 | # Check length of y array |
---|
[7a03e65] | 611 | if not len(y)==len(x): |
---|
| 612 | raise ValueError, "Plottable.View: Given y and x are not of the same length" |
---|
[6ed101a] | 613 | |
---|
[052a66bc] | 614 | if not dy==None and not len(dy)==0 and not len(y)==len(dy): |
---|
| 615 | message = "Plottable.View: Given y and dy are not of the same length: len(y)=%s, len(dy)=%s" %(len(y), len(dy)) |
---|
| 616 | raise ValueError, message |
---|
| 617 | |
---|
| 618 | |
---|
[6ed101a] | 619 | self.x = [] |
---|
| 620 | self.y = [] |
---|
[052a66bc] | 621 | if has_err_x: |
---|
| 622 | self.dx = [] |
---|
| 623 | else: |
---|
| 624 | self.dx = None |
---|
| 625 | if has_err_y: |
---|
| 626 | self.dy = [] |
---|
| 627 | else: |
---|
| 628 | self.dy = None |
---|
[34ae302] | 629 | tempx=[] |
---|
| 630 | tempy=[] |
---|
[052a66bc] | 631 | |
---|
| 632 | if not has_err_x: |
---|
[6ed101a] | 633 | dx=numpy.zeros(len(x)) |
---|
[052a66bc] | 634 | if not has_err_y: |
---|
[6ed101a] | 635 | dy=numpy.zeros(len(y)) |
---|
[47f695c9] | 636 | |
---|
[6ed101a] | 637 | for i in range(len(x)): |
---|
[46693050] | 638 | try: |
---|
[6ed101a] | 639 | tempx =self.funcx(x[i],y[i]) |
---|
| 640 | tempy =self.funcy(y[i],x[i]) |
---|
[052a66bc] | 641 | if has_err_x: |
---|
| 642 | tempdx = self.funcdx(x[i], y[i], dx[i], dy[i]) |
---|
| 643 | if has_err_y: |
---|
| 644 | tempdy = self.funcdy(y[i], x[i], dy[i], dx[i]) |
---|
[6ed101a] | 645 | |
---|
| 646 | self.x.append(tempx) |
---|
| 647 | self.y.append(tempy) |
---|
[052a66bc] | 648 | if has_err_x: |
---|
| 649 | self.dx.append(tempdx) |
---|
| 650 | if has_err_y: |
---|
| 651 | self.dy.append(tempdy) |
---|
[46693050] | 652 | except: |
---|
[34ae302] | 653 | tempx=x[i] |
---|
| 654 | tempy=y[i] |
---|
[052a66bc] | 655 | print "View.transform: skipping point x=%g y=%g" % (x[i], y[i]) |
---|
[34ae302] | 656 | |
---|
[47f695c9] | 657 | print sys.exc_value |
---|
[34ae302] | 658 | |
---|
[6ed101a] | 659 | # Sanity check |
---|
[052a66bc] | 660 | if not len(self.x)==len(self.y): |
---|
| 661 | raise ValueError, "Plottable.View: transformed x and y are not of the same length" |
---|
| 662 | if has_err_x and not (len(self.x) and len(self.dx)): |
---|
| 663 | raise ValueError, "Plottable.View: transformed x and dx are not of the same length" |
---|
| 664 | if has_err_y and not (len(self.y) and len(self.dy)): |
---|
| 665 | raise ValueError, "Plottable.View: transformed y and dy are not of the same length" |
---|
| 666 | |
---|
[b43a009] | 667 | # Check that negative values are not plot on x and y axis for log10 transformation |
---|
[47f695c9] | 668 | self.check_data_logX() |
---|
| 669 | self.check_data_logY() |
---|
[b43a009] | 670 | # Store x ,y dx,and dy in their full range for reset |
---|
[34ae302] | 671 | self.Xreel = self.x |
---|
| 672 | self.Yreel = self.y |
---|
| 673 | self.DXreel = self.dx |
---|
| 674 | self.DYreel = self.dy |
---|
[b43a009] | 675 | |
---|
| 676 | |
---|
[34ae302] | 677 | def onResetView(self): |
---|
[b43a009] | 678 | """ |
---|
| 679 | Reset x,y,dx and y in their full range and in the initial scale |
---|
| 680 | in case their previous range has changed |
---|
| 681 | """ |
---|
| 682 | self.x = self.Xreel |
---|
| 683 | self.y = self.Yreel |
---|
| 684 | self.dx = self.DXreel |
---|
| 685 | self.dy = self.DYreel |
---|
| 686 | |
---|
| 687 | def setTransformX(self,funcx,funcdx): |
---|
| 688 | """ |
---|
| 689 | Receive pointers to function that transform x and dx |
---|
| 690 | and set corresponding View pointers |
---|
| 691 | @param transx: pointer to function that transforms x |
---|
| 692 | @param transdx: pointer to function that transforms dx |
---|
| 693 | """ |
---|
[f193585] | 694 | self.funcx= funcx |
---|
| 695 | self.funcdx= funcdx |
---|
| 696 | |
---|
[b43a009] | 697 | def setTransformY(self,funcy,funcdy): |
---|
| 698 | """ |
---|
| 699 | Receive pointers to function that transform y and dy |
---|
| 700 | and set corresponding View pointers |
---|
| 701 | @param transx: pointer to function that transforms y |
---|
| 702 | @param transdx: pointer to function that transforms dy |
---|
| 703 | """ |
---|
[f193585] | 704 | self.funcy= funcy |
---|
| 705 | self.funcdy= funcdy |
---|
[6ed101a] | 706 | |
---|
[f63f5ff] | 707 | def returnXview(self): |
---|
[b43a009] | 708 | """ |
---|
| 709 | Return View x,y,dx,dy |
---|
| 710 | """ |
---|
[5789654] | 711 | return self.x,self.y,self.dx,self.dy |
---|
[831149e] | 712 | |
---|
[f193585] | 713 | |
---|
[46693050] | 714 | def check_data_logX(self): |
---|
[b43a009] | 715 | """ |
---|
| 716 | Remove negative value in x vector |
---|
| 717 | to avoid plotting negative value of Log10 |
---|
| 718 | """ |
---|
[46693050] | 719 | tempx=[] |
---|
| 720 | tempdx=[] |
---|
| 721 | tempy=[] |
---|
| 722 | tempdy=[] |
---|
[6ed101a] | 723 | if self.dx==None: |
---|
| 724 | self.dx=numpy.zeros(len(self.x)) |
---|
| 725 | if self.dy==None: |
---|
| 726 | self.dy=numpy.zeros(len(self.y)) |
---|
[b43a009] | 727 | if self.xLabel=="log10(x)" : |
---|
[f193585] | 728 | for i in range(len(self.x)): |
---|
| 729 | try: |
---|
| 730 | if (self.x[i]> 0): |
---|
| 731 | |
---|
| 732 | tempx.append(self.x[i]) |
---|
| 733 | tempdx.append(self.dx[i]) |
---|
| 734 | tempy.append(self.y[i]) |
---|
| 735 | tempdy.append(self.dy[i]) |
---|
| 736 | except: |
---|
[47f695c9] | 737 | print "check_data_logX: skipping point x %g" %self.x[i] |
---|
[f193585] | 738 | print sys.exc_value |
---|
| 739 | pass |
---|
[6ed101a] | 740 | |
---|
[b43a009] | 741 | self.x = tempx |
---|
| 742 | self.y = tempy |
---|
| 743 | self.dx = tempdx |
---|
| 744 | self.dy = tempdy |
---|
[f193585] | 745 | |
---|
[46693050] | 746 | def check_data_logY(self): |
---|
[b43a009] | 747 | """ |
---|
| 748 | Remove negative value in y vector |
---|
| 749 | to avoid plotting negative value of Log10 |
---|
| 750 | """ |
---|
[46693050] | 751 | tempx=[] |
---|
| 752 | tempdx=[] |
---|
| 753 | tempy=[] |
---|
| 754 | tempdy=[] |
---|
[6ed101a] | 755 | if self.dx==None: |
---|
| 756 | self.dx=numpy.zeros(len(self.x)) |
---|
| 757 | if self.dy==None: |
---|
| 758 | self.dy=numpy.zeros(len(self.y)) |
---|
[b43a009] | 759 | if (self.yLabel == "log10(y)" ): |
---|
[6ed101a] | 760 | for i in range(len(self.x)): |
---|
[f193585] | 761 | try: |
---|
| 762 | if (self.y[i]> 0): |
---|
| 763 | tempx.append(self.x[i]) |
---|
| 764 | tempdx.append(self.dx[i]) |
---|
| 765 | tempy.append(self.y[i]) |
---|
| 766 | tempdy.append(self.dy[i]) |
---|
| 767 | except: |
---|
[47f695c9] | 768 | print "check_data_logY: skipping point %g" %self.y[i] |
---|
[f193585] | 769 | print sys.exc_value |
---|
| 770 | pass |
---|
[b43a009] | 771 | |
---|
| 772 | self.x = tempx |
---|
| 773 | self.y = tempy |
---|
| 774 | self.dx = tempdx |
---|
| 775 | self.dy = tempdy |
---|
[46693050] | 776 | |
---|
[150c04a] | 777 | def onFitRangeView(self,xmin=None,xmax=None): |
---|
[b43a009] | 778 | """ |
---|
| 779 | It limits View data range to plot from min to max |
---|
| 780 | @param xmin: the minimum value of x to plot. |
---|
| 781 | @param xmax: the maximum value of x to plot |
---|
| 782 | """ |
---|
[34ae302] | 783 | tempx=[] |
---|
| 784 | tempdx=[] |
---|
| 785 | tempy=[] |
---|
| 786 | tempdy=[] |
---|
[bbec827] | 787 | if self.dx==None: |
---|
| 788 | self.dx=numpy.zeros(len(self.x)) |
---|
| 789 | if self.dy==None: |
---|
| 790 | self.dy=numpy.zeros(len(self.y)) |
---|
[150c04a] | 791 | if ( xmin != None ) and ( xmax != None ): |
---|
| 792 | for i in range(len(self.x)): |
---|
| 793 | if ( self.x[i] >= xmin ) and ( self.x[i] <= xmax ): |
---|
| 794 | tempx.append(self.x[i]) |
---|
| 795 | tempdx.append(self.dx[i]) |
---|
| 796 | tempy.append(self.y[i]) |
---|
| 797 | tempdy.append(self.dy[i]) |
---|
| 798 | self.x=tempx |
---|
| 799 | self.y=tempy |
---|
| 800 | self.dx=tempdx |
---|
| 801 | self.dy=tempdy |
---|
[831149e] | 802 | |
---|
[2bf92f2] | 803 | class Data1D(Plottable): |
---|
| 804 | """Data plottable: scatter plot of x,y with errors in x and y. |
---|
| 805 | """ |
---|
| 806 | |
---|
| 807 | def __init__(self,x,y,dx=None,dy=None): |
---|
| 808 | """Draw points specified by x[i],y[i] in the current color/symbol. |
---|
| 809 | Uncertainty in x is given by dx[i], or by (xlo[i],xhi[i]) if the |
---|
| 810 | uncertainty is asymmetric. Similarly for y uncertainty. |
---|
| 811 | |
---|
| 812 | The title appears on the legend. |
---|
| 813 | The label, if it is different, appears on the status bar. |
---|
| 814 | """ |
---|
[057210c] | 815 | self.name = "data" |
---|
[2bf92f2] | 816 | self.x = x |
---|
| 817 | self.y = y |
---|
| 818 | self.dx = dx |
---|
| 819 | self.dy = dy |
---|
[05da1f89] | 820 | self.xaxis( '', '') |
---|
| 821 | self.yaxis( '', '') |
---|
[057210c] | 822 | self.view = self.View(self.x, self.y, self.dx, self.dy) |
---|
[52b1f77] | 823 | |
---|
[2bf92f2] | 824 | def render(self,plot,**kw): |
---|
[4972de2] | 825 | """ |
---|
| 826 | Renders the plottable on the graph |
---|
| 827 | """ |
---|
| 828 | if self.interactive==True: |
---|
| 829 | plot.interactive_points(self.view.x,self.view.y, |
---|
| 830 | dx=self.view.dx,dy=self.view.dy, |
---|
| 831 | name=self.name, **kw) |
---|
| 832 | else: |
---|
| 833 | plot.points(self.view.x,self.view.y,dx=self.view.dx,dy=self.view.dy,**kw) |
---|
[52b1f77] | 834 | |
---|
[2bf92f2] | 835 | def changed(self): |
---|
| 836 | return False |
---|
| 837 | |
---|
[057210c] | 838 | @classmethod |
---|
| 839 | def labels(cls, collection): |
---|
| 840 | """Build a label mostly unique within a collection""" |
---|
| 841 | map = {} |
---|
| 842 | for item in collection: |
---|
| 843 | #map[item] = label(item, collection) |
---|
| 844 | map[item] = r"$\rm{%s}$" % item.name |
---|
| 845 | return map |
---|
[2bf92f2] | 846 | |
---|
| 847 | class Theory1D(Plottable): |
---|
| 848 | """Theory plottable: line plot of x,y with confidence interval y. |
---|
| 849 | """ |
---|
| 850 | def __init__(self,x,y,dy=None): |
---|
| 851 | """Draw lines specified in x[i],y[i] in the current color/symbol. |
---|
| 852 | Confidence intervals in x are given by dx[i] or by (xlo[i],xhi[i]) |
---|
| 853 | if the limits are asymmetric. |
---|
| 854 | |
---|
| 855 | The title is the name that will show up on the legend. |
---|
| 856 | """ |
---|
[b43a009] | 857 | self.name= "theory" |
---|
[2bf92f2] | 858 | self.x = x |
---|
| 859 | self.y = y |
---|
| 860 | self.dy = dy |
---|
[05da1f89] | 861 | self.xaxis( '', '') |
---|
| 862 | self.yaxis( '', '') |
---|
[061775ff] | 863 | self.view = self.View(self.x, self.y, None, self.dy) |
---|
[b43a009] | 864 | |
---|
[2bf92f2] | 865 | def render(self,plot,**kw): |
---|
[4972de2] | 866 | if self.interactive==True: |
---|
| 867 | plot.interactive_curve(self.view.x,self.view.y, |
---|
| 868 | dy=self.view.dy, |
---|
| 869 | name=self.name,**kw) |
---|
| 870 | else: |
---|
| 871 | plot.curve(self.view.x,self.view.y,dy=self.view.dy,**kw) |
---|
| 872 | |
---|
[2bf92f2] | 873 | |
---|
| 874 | def changed(self): |
---|
| 875 | return False |
---|
[8e44d51] | 876 | |
---|
[5789654] | 877 | @classmethod |
---|
| 878 | def labels(cls, collection): |
---|
| 879 | """Build a label mostly unique within a collection""" |
---|
| 880 | map = {} |
---|
| 881 | for item in collection: |
---|
| 882 | #map[item] = label(item, collection) |
---|
| 883 | map[item] = r"$\rm{%s}$" % item.name |
---|
| 884 | return map |
---|
| 885 | |
---|
[8e44d51] | 886 | |
---|
[2bf92f2] | 887 | class Fit1D(Plottable): |
---|
| 888 | """Fit plottable: composed of a data line plus a theory line. This |
---|
| 889 | is treated like a single object from the perspective of the graph, |
---|
| 890 | except that it will have two legend entries, one for the data and |
---|
| 891 | one for the theory. |
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| 892 | |
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| 893 | The color of the data and theory will be shared.""" |
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| 894 | |
---|
| 895 | def __init__(self,data=None,theory=None): |
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| 896 | self.data=data |
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| 897 | self.theory=theory |
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| 898 | |
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| 899 | def render(self,plot,**kw): |
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| 900 | self.data.render(plot,**kw) |
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| 901 | self.theory.render(plot,**kw) |
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| 902 | |
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| 903 | def changed(self): |
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| 904 | return self.data.changed() or self.theory.changed() |
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| 905 | |
---|
| 906 | ###################################################### |
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| 907 | |
---|
| 908 | def sample_graph(): |
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| 909 | import numpy as nx |
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| 910 | |
---|
| 911 | # Construct a simple graph |
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| 912 | if False: |
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| 913 | x = nx.array([1,2,3,4,5,6],'d') |
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| 914 | y = nx.array([4,5,6,5,4,5],'d') |
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| 915 | dy = nx.array([0.2, 0.3, 0.1, 0.2, 0.9, 0.3]) |
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| 916 | else: |
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| 917 | x = nx.linspace(0,1.,10000) |
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| 918 | y = nx.sin(2*nx.pi*x*2.8) |
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| 919 | dy = nx.sqrt(100*nx.abs(y))/100 |
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| 920 | data = Data1D(x,y,dy=dy) |
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| 921 | data.xaxis('distance', 'm') |
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| 922 | data.yaxis('time', 's') |
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| 923 | graph = Graph() |
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| 924 | graph.title('Walking Results') |
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| 925 | graph.add(data) |
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| 926 | graph.add(Theory1D(x,y,dy=dy)) |
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| 927 | |
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[52b1f77] | 928 | return graph |
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[2bf92f2] | 929 | |
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| 930 | def demo_plotter(graph): |
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| 931 | import wx |
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| 932 | #from pylab_plottables import Plotter |
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| 933 | from mplplotter import Plotter |
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| 934 | |
---|
| 935 | # Make a frame to show it |
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| 936 | app = wx.PySimpleApp() |
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| 937 | frame = wx.Frame(None,-1,'Plottables') |
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| 938 | plotter = Plotter(frame) |
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| 939 | frame.Show() |
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| 940 | |
---|
| 941 | # render the graph to the pylab plotter |
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| 942 | graph.render(plotter) |
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| 943 | |
---|
| 944 | class GraphUpdate: |
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| 945 | callnum=0 |
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| 946 | def __init__(self,graph,plotter): |
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| 947 | self.graph,self.plotter = graph,plotter |
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| 948 | def __call__(self): |
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| 949 | if self.graph.changed(): |
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| 950 | self.graph.render(self.plotter) |
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| 951 | return True |
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| 952 | return False |
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| 953 | def onIdle(self,event): |
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| 954 | #print "On Idle checker %d"%(self.callnum) |
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| 955 | self.callnum = self.callnum+1 |
---|
| 956 | if self.__call__(): |
---|
| 957 | pass # event.RequestMore() |
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| 958 | update = GraphUpdate(graph,plotter) |
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| 959 | frame.Bind(wx.EVT_IDLE,update.onIdle) |
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| 960 | app.MainLoop() |
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| 961 | |
---|
| 962 | import sys; print sys.version |
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| 963 | if __name__ == "__main__": |
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| 964 | demo_plotter(sample_graph()) |
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| 965 | |
---|