[b3644f3] | 1 | |
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[32c0841] | 2 | import os |
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| 3 | import sys |
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| 4 | import numpy |
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[de9483d] | 5 | import wx |
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[a618972] | 6 | import re |
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[b3644f3] | 7 | |
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[ff3f900b] | 8 | from dataFitting import Data1D |
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| 9 | from dataFitting import Data2D |
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[c7bc3e7] | 10 | from DataLoader.loader import Loader |
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[b3644f3] | 11 | from load_thread import DataReader |
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[7a07864] | 12 | from sans.guicomm.events import FitStateUpdateEvent |
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| 13 | from sans.guicomm.events import InvStateUpdateEvent |
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[32c0841] | 14 | from sans.guicomm.events import StatusEvent |
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| 15 | from sans.guicomm.events import NewPlotEvent |
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[b3644f3] | 16 | |
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[32c0841] | 17 | SVS_FILE_EXT = ['.svs', '.inv', '.prv', '.fitv'] |
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[b3644f3] | 18 | |
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[d792e813] | 19 | def enable_add_data(existing_panel, new_plot): |
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| 20 | """ |
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[d955bf19] | 21 | Enable append data on a plot panel |
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[d792e813] | 22 | """ |
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[32c0841] | 23 | is_theory = len(existing_panel.plots) <= 1 and \ |
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| 24 | existing_panel.plots.values()[0].__class__.__name__ == "Theory1D" |
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[d792e813] | 25 | |
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| 26 | is_data2d = hasattr(new_plot, 'data') |
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| 27 | is_data1d = existing_panel.__class__.__name__ == "ModelPanel1D"\ |
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| 28 | and existing_panel.group_id is not None |
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[d45e7e9] | 29 | has_meta_data = hasattr(new_plot, 'meta_data') |
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| 30 | |
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| 31 | #disable_add_data if the data is being recovered from a saved state file. |
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| 32 | is_state_data = False |
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| 33 | if has_meta_data: |
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| 34 | if 'invstate' in new_plot.meta_data: is_state_data = True |
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| 35 | if 'prstate' in new_plot.meta_data: is_state_data = True |
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| 36 | if 'fitstate' in new_plot.meta_data: is_state_data = True |
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| 37 | |
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| 38 | return is_data1d and not is_data2d and not is_theory and not is_state_data |
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[58eac5d] | 39 | |
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[a618972] | 40 | def parse_name(name, expression): |
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| 41 | """ |
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[d955bf19] | 42 | remove "_" in front of a name |
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[a618972] | 43 | """ |
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| 44 | if re.match(expression, name) is not None: |
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| 45 | word = re.split(expression, name, 1) |
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| 46 | for item in word: |
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| 47 | if item.lstrip().rstrip() != '': |
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| 48 | return item |
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| 49 | else: |
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| 50 | return name |
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| 51 | |
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[de9483d] | 52 | def choose_data_file(parent, location=None): |
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[d955bf19] | 53 | """ |
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| 54 | """ |
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[de9483d] | 55 | path = None |
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[196608d] | 56 | if location == None: |
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[de9483d] | 57 | location = os.getcwd() |
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[c7bc3e7] | 58 | |
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| 59 | l = Loader() |
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| 60 | cards = l.get_wildcards() |
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| 61 | wlist = '|'.join(cards) |
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| 62 | |
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[4e9583c] | 63 | dlg = wx.FileDialog(parent, "Choose a file", location, "", wlist, wx.OPEN) |
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[de9483d] | 64 | if dlg.ShowModal() == wx.ID_OK: |
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| 65 | path = dlg.GetPath() |
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| 66 | mypath = os.path.basename(path) |
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| 67 | dlg.Destroy() |
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| 68 | |
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[4e9583c] | 69 | return path |
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[de9483d] | 70 | |
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[d792e813] | 71 | def open_dialog_append_data(panel_name, data_name): |
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[b91c736] | 72 | """ |
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[d955bf19] | 73 | Pop up an error message. |
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| 74 | |
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| 75 | :param panel_name: the name of the current panel |
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| 76 | :param data_name: the name of the current data |
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| 77 | |
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[b91c736] | 78 | """ |
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[32c0841] | 79 | message = " Do you want to append %s data\n in " % (str(data_name)) |
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| 80 | message += " %s panel?\n\n" % (str(panel_name)) |
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[b91c736] | 81 | dial = wx.MessageDialog(None, message, 'Question', |
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| 82 | wx.YES_NO|wx.NO_DEFAULT|wx.ICON_QUESTION) |
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| 83 | if dial.ShowModal() == wx.ID_YES: |
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| 84 | return True |
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| 85 | else: |
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| 86 | return False |
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[4e9583c] | 87 | |
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[32c0841] | 88 | # where is this method used? |
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[4e9583c] | 89 | def load_ascii_1D(path): |
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| 90 | """ |
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| 91 | Load a 1D ascii file, with errors |
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| 92 | """ |
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| 93 | if path and os.path.isfile(path): |
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| 94 | |
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| 95 | file_x = numpy.zeros(0) |
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| 96 | file_y = numpy.zeros(0) |
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| 97 | file_dy = numpy.zeros(0) |
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| 98 | file_dx = numpy.zeros(0) |
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| 99 | |
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| 100 | input_f = open(path,'r') |
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| 101 | buff = input_f.read() |
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| 102 | lines = buff.split('\n') |
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| 103 | |
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| 104 | has_dy = False |
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| 105 | has_dx = False |
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| 106 | |
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| 107 | for line in lines: |
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| 108 | try: |
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| 109 | toks = line.split() |
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| 110 | x = float(toks[0]) |
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| 111 | y = float(toks[1]) |
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[32c0841] | 112 | if len(toks) == 3: |
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[4e9583c] | 113 | has_dy = True |
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| 114 | errdy = float(toks[2]) |
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| 115 | else: |
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| 116 | errdy = 0.0 |
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| 117 | if len(toks) == 4: |
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| 118 | has_dx = True |
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| 119 | errdx = float(toks[3]) |
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| 120 | else: |
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| 121 | errdx = 0.0 |
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| 122 | file_x = numpy.append(file_x, x) |
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| 123 | file_y = numpy.append(file_y, y) |
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| 124 | file_dy = numpy.append(file_dy, dyerr) |
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| 125 | file_dx = numpy.append(file_dx, dxerr) |
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| 126 | except: |
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| 127 | print "READ ERROR", line |
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| 128 | |
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| 129 | if has_dy == False: |
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| 130 | file_dy = None |
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| 131 | if has_dx == False: |
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| 132 | file_dx = None |
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| 133 | |
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| 134 | return file_x, file_y, file_dy, file_dx |
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| 135 | return None, None, None, None |
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[fc2b91a] | 136 | |
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[cb0d17c] | 137 | def load_error(error=None): |
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| 138 | """ |
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[d955bf19] | 139 | Pop up an error message. |
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| 140 | |
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| 141 | :param error: details error message to be displayed |
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[cb0d17c] | 142 | """ |
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[0881f51] | 143 | message = "The data file you selected could not be loaded.\n" |
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[cb0d17c] | 144 | message += "Make sure the content of your file is properly formatted.\n\n" |
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| 145 | |
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| 146 | if error is not None: |
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[32c0841] | 147 | message += "When contacting the DANSE team, mention the" |
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| 148 | message += " following:\n%s" % str(error) |
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[cb0d17c] | 149 | |
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[32c0841] | 150 | dial = wx.MessageDialog(None, message, 'Error Loading File', |
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| 151 | wx.OK | wx.ICON_EXCLAMATION) |
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[cb0d17c] | 152 | dial.ShowModal() |
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| 153 | |
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[b3644f3] | 154 | def on_load_error(parent): |
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| 155 | """ |
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| 156 | """ |
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| 157 | wx.PostEvent(parent, StatusEvent(status="Load cancel..", info="warning", |
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| 158 | type="stop")) |
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[cc1ead1] | 159 | |
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[b35d3d1] | 160 | def plot_data(parent, path, format=None): |
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[6d920cd] | 161 | """ |
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[d955bf19] | 162 | Use the DataLoader loader to created data to plot. |
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| 163 | |
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| 164 | :param path: the path of the data to load |
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[b35d3d1] | 165 | : param format: file format (as file extension) |
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[6d920cd] | 166 | """ |
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[32c0841] | 167 | #from sans.guicomm.events import NewPlotEvent, StatusEvent |
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| 168 | #from DataLoader.loader import Loader |
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[cc1ead1] | 169 | # Instantiate a loader |
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| 170 | L = Loader() |
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| 171 | |
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| 172 | # Load data |
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| 173 | try: |
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[b35d3d1] | 174 | output = L.load(path, format) |
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[cc1ead1] | 175 | except: |
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[4e9583c] | 176 | load_error(sys.exc_value) |
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[cc1ead1] | 177 | return |
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[b63dc6e] | 178 | basename = os.path.basename(path) |
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[cb0d17c] | 179 | # Notify user if the loader completed the load but no data came out |
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| 180 | if output == None: |
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[028a0e8] | 181 | if not basename.endswith('.svs'): |
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| 182 | load_error("The data file appears to be empty.") |
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[cb0d17c] | 183 | return |
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[cc1ead1] | 184 | |
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[b63dc6e] | 185 | root, extension = os.path.splitext(basename) |
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| 186 | ext = extension.lower() |
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[acb1ad1] | 187 | filename = os.path.basename(path) |
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[196608d] | 188 | if not output.__class__.__name__ == "list": |
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[12aa9b5] | 189 | ## Creating a Data2D with output |
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[81812d9] | 190 | if hasattr(output,'data'): |
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[32c0841] | 191 | msg = "Loading 2D data: %s" % output.filename |
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| 192 | wx.PostEvent(parent, StatusEvent(status=msg, info="info", |
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| 193 | type="stop")) |
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[196608d] | 194 | new_plot = Data2D(image=None, err_image=None) |
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[ff3f900b] | 195 | |
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[81812d9] | 196 | else: |
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[32c0841] | 197 | msg = "Loading 1D data: %s" % output.filename |
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| 198 | wx.PostEvent(parent, StatusEvent(status=msg, info="info", |
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| 199 | type="stop")) |
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[196608d] | 200 | new_plot = Data1D(x=[], y=[], dx=None, dy=None) |
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[ff3f900b] | 201 | |
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| 202 | new_plot.copy_from_datainfo(output) |
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| 203 | output.clone_without_data(clone=new_plot) |
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| 204 | |
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[25ccf33] | 205 | ## data 's name |
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[196608d] | 206 | if output.filename is None or output.filename == "": |
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[ff3f900b] | 207 | output.filename = str(filename) |
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[12aa9b5] | 208 | ## name of the data allow to differentiate data when plotted |
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[a618972] | 209 | name = parse_name(name=output.filename, expression="_") |
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[ff3f900b] | 210 | |
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[35eeea8] | 211 | new_plot.name = name |
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[12aa9b5] | 212 | ## allow to highlight data when plotted |
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[81812d9] | 213 | new_plot.interactive = True |
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[12aa9b5] | 214 | ## when 2 data have the same id override the 1 st plotted |
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[35eeea8] | 215 | new_plot.id = name |
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[12aa9b5] | 216 | ##group_id specify on which panel to plot this data |
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[35eeea8] | 217 | new_plot.group_id = name |
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[196608d] | 218 | new_plot.is_data = True |
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[12aa9b5] | 219 | ##post data to plot |
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[b91c736] | 220 | title = output.filename |
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[ff3f900b] | 221 | if hasattr(new_plot,"title"): |
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[b91c736] | 222 | title = str(new_plot.title.lstrip().rstrip()) |
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[196608d] | 223 | if title == "": |
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| 224 | title = str(name) |
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[ff3f900b] | 225 | else: |
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| 226 | title = str(name) |
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[32c0841] | 227 | if hasattr(parent, "panel_on_focus") and \ |
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| 228 | not(parent.panel_on_focus is None): |
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| 229 | existing_panel = parent.panel_on_focus |
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| 230 | panel_name = existing_panel.window_caption |
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| 231 | data_name = new_plot.name |
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| 232 | if enable_add_data(existing_panel, new_plot): |
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| 233 | if open_dialog_append_data(panel_name, data_name): |
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| 234 | #add this plot the an existing panel |
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| 235 | new_plot.group_id = existing_panel.group_id |
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[ef16f59] | 236 | # plot data |
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[af47c8d] | 237 | wx.PostEvent(parent, NewPlotEvent(plot=new_plot, title=title)) |
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[b63dc6e] | 238 | if ext in SVS_FILE_EXT: |
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[9b18735] | 239 | # set state and plot computation if exists |
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[32c0841] | 240 | wx.PostEvent(parent, InvStateUpdateEvent()) |
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| 241 | wx.PostEvent(parent, FitStateUpdateEvent()) |
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| 242 | ## the output of the loader is a list , some xml files contain |
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| 243 | #more than one data |
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[81812d9] | 244 | else: |
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[32c0841] | 245 | i = 0 |
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[ef16f59] | 246 | for item in output: |
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[81812d9] | 247 | try: |
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[4da35bc] | 248 | ## Creating a Data2D with output |
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[32c0841] | 249 | if hasattr(item, 'data'): |
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| 250 | msg = "Loading 2D data: %s" % item.filename |
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| 251 | wx.PostEvent(parent, StatusEvent(status=msg, info="info", |
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| 252 | type="stop")) |
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[4da35bc] | 253 | new_plot = Data2D(image=None, err_image=None) |
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| 254 | |
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| 255 | else: |
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[32c0841] | 256 | msg = "Loading 1D data: %s" % str(item.run[0]) |
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| 257 | wx.PostEvent(parent, StatusEvent(status=msg, info="info", |
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| 258 | type="stop")) |
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[4da35bc] | 259 | try: |
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| 260 | dx = item.dx |
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| 261 | dxl = item.dxl |
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| 262 | dxw = item.dxw |
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| 263 | except: |
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| 264 | dx = None |
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| 265 | dxl = None |
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| 266 | dxw = None |
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| 267 | |
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[32c0841] | 268 | new_plot = Data1D(x=item.x, y=item.y, dx=dx, dy=item.dy) |
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[ef16f59] | 269 | if dxl != None: |
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| 270 | new_plot.dxl = dxl |
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| 271 | if dxl != None: |
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| 272 | new_plot.dxw = dxw |
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| 273 | |
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| 274 | new_plot.copy_from_datainfo(item) |
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[4da35bc] | 275 | item.clone_without_data(clone=new_plot) |
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[9b18735] | 276 | # find original data file name without timestemp |
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[b35d3d1] | 277 | name = parse_name(name=str(item.run[0]), expression="_") |
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[9b18735] | 278 | max_char = name.find("[") |
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| 279 | if max_char < 0: |
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| 280 | max_char = len(name) |
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[32c0841] | 281 | original_name = name[0:max_char] |
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[ef16f59] | 282 | #TODO: this is a very annoying feature. We should make this |
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| 283 | # an option. Excel doesn't do this. Why should we? |
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| 284 | # What is the requirement for this feature, and are the |
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| 285 | # counter arguments stronger? Is this feature developed |
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| 286 | # to please at least 80% of the users or a special few? |
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[b35d3d1] | 287 | new_plot.name = name |
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| 288 | new_plot.interactive = True |
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[9b18735] | 289 | new_plot.group_id = original_name |
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[b35d3d1] | 290 | new_plot.id = name |
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| 291 | new_plot.is_data = True |
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[ef16f59] | 292 | title = item.filename |
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| 293 | |
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[32c0841] | 294 | if hasattr(item, "title"): |
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[b35d3d1] | 295 | title = item.title.lstrip().rstrip() |
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| 296 | if title == "": |
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| 297 | title = str(name) |
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| 298 | else: |
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| 299 | title = name |
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[32c0841] | 300 | if hasattr(parent, "panel_on_focus") and \ |
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| 301 | not(parent.panel_on_focus is None): |
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[b35d3d1] | 302 | existing_panel = parent.panel_on_focus |
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| 303 | panel_name = existing_panel.window_caption |
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| 304 | data_name = new_plot.name |
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| 305 | if enable_add_data(existing_panel, new_plot): |
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| 306 | if open_dialog_append_data(panel_name, data_name): |
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| 307 | #add this plot the an existing panel |
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| 308 | new_plot.group_id = existing_panel.group_id |
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[ef16f59] | 309 | # plot data |
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[32c0841] | 310 | wx.PostEvent(parent, NewPlotEvent(plot=new_plot, |
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| 311 | title=str(title))) |
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[b63dc6e] | 312 | if ext in SVS_FILE_EXT: |
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[9b18735] | 313 | # set state and plot computation if exists |
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[32c0841] | 314 | wx.PostEvent(parent, InvStateUpdateEvent()) |
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| 315 | wx.PostEvent(parent, FitStateUpdateEvent()) |
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[b35d3d1] | 316 | except: |
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[32c0841] | 317 | raise |
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