1 | <html> |
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2 | <head> |
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3 | </head> |
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4 | |
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5 | |
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6 | <body> |
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7 | <h4> Batch Fit </h4> |
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8 | |
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9 | <ul> |
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10 | <li><a href="#fitpage">Batch Fit</a></li> |
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11 | <li><a href="#batchwindow">Batch Window</a></li> |
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12 | </ul> |
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13 | |
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14 | <h5><font color="blue"><a name="fitpage">Batch Fit</a></font></h5> |
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15 | <p> |
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16 | Create <b>Batch Page </b> by selecting <b>Batch </b> radio button on |
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17 | Data Explorer<font color="blue"><a href="#batch_button">(see figure below)</a></font> |
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18 | and for a new control page select 'New FitPage' in the 'Fitting' menubar.<br /> |
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19 | </p> |
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20 | <br /><img src="batch_button_area.bmp" /><br /><br /> |
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21 | <a name="figure1"><u>Figure 1: MenuBar</u></a><br /> |
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22 | <br /> |
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23 | Load Data to Data Explorer if not loaded. <br/> |
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24 | Select one or more data sets by checking the check boxes, and then make sure |
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25 | that "Fitting" is selected in the dropdown menu next to the "Send To" button. |
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26 | Once ready, click the 'Send To' button to set data to a BatchPage. If already an empty batch page exists, it will be set there. |
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27 | Otherwise it will create a new Batch Page. |
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28 | Set up the model and the parameter values as same as a single fitting <font color="blue"><a href="single_fit_help.html">(see single fit help)</a></font>. |
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29 | The use 'Fit' button to perform the fitting. |
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30 | <br />Unlike a single fit, the results of the fittings will not return to the BatchPage'. Instead, a Grid window will be provided once the fitting is completed. |
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31 | The Grid window is also accessible from the 'View' menu <font color="blue"><a href="#figure2">(see Figure 2)</a></font>. |
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32 | <br /> Note that only one model is used for all the data. |
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33 | The initial parameter values given in the control page will be used all the data fittings. If one wants the FitEngine to use the initial values |
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34 | from the results of the previous data fitting (if any), choose the 'Chain Fitting' in the Fitting menubar, which will speed up the fitting |
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35 | especially when you have lots of, and similar, data sets. |
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36 | </p> |
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37 | |
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38 | <h5><font color="blue"><a name="batchwindow">Batch Window</a></font></h5> |
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39 | <p> |
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40 | Batch Window provides an easy way to view the fit results, i.e., plot data, fits, and residuals. |
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41 | Batch window will be automatically shown after a batch fit is finished. <br /> |
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42 | Once closed, |
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43 | it can be opened anytime from the "View" menubar item <font color="blue"><a href="#figure2">(see Figure 2)</a></font>.<br /> |
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44 | </p> |
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45 | <br /><br /><img src="restore_batch_window.bmp" /><br /><br /> |
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46 | <a name="#figure2"><u>Figure 2: Edit Menu</u></a><br /> |
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47 | <br /> |
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48 | <ul> |
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49 | <li> <a href="#edit_grid"> Edit Grid </a></li> |
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50 | <li><a href="#save_grid"> Save Grid </a></li> |
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51 | <li><a href="#load_batch"> Open Batch Results </a></li> |
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52 | <li><a href="#plot"> Plot </a></li> |
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53 | <li><a href="#view"> View Column/Cell(s) </a></li> |
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54 | </ul> |
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55 | |
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56 | |
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57 | |
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58 | <h5><font color="blue"><a name="edit_grid"> Edit Grid </a></font></h5> |
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59 | <p> |
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60 | Once a batch fit is completed, all fitted and fixed model parameters are displayed to the current sheet of |
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61 | the batch window except the errors of the parameters. To view the errors, |
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62 | click on a given column then under <b> Edit </b> menubar item, and insert the desired parameter by selecting |
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63 | a menu item with the appropriated label. Empty column can be inserted in the same way. |
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64 | A column value can be customized by editing an existing empty column.<br /> |
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65 | To Remove column from the grid, select it, choose edit menu, and click the <b> 'remove' </b> menu item. |
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66 | Any removed column should reinserted whenever needed.<br /> |
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67 | All above options are also available when right clicking on a given column label |
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68 | <font color="blue"><a href="#figure3">(see Figure 3)</a></font>. |
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69 | <b>Note:</b> A column always needs to be selected in order to remove or insert a column in the grid.<br /><br /> |
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70 | |
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71 | <img src="edit_menu.bmp" /><br /><br /> |
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72 | <a name="figure3"><u>Figure 3: Edit Menu</u></a><br /> |
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73 | </p> |
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74 | |
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75 | |
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76 | <h5><font color="blue"><a name="save_grid"> Save Grid </a></font></h5> |
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77 | <p> |
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78 | To save the current page on the batch window, select the <b> 'File' </b> menubar item |
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79 | <font color="blue"><a href="#figure4">(see Figure 4)</a></font>, then choose the <b> 'Save as' </b> |
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80 | menu item to save it as a .csv file. <br /> |
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81 | <b>Note: </b> The grid doesn't save the data array, fits, and the array residuals. As a result, the 'View (fit) Results' functionality |
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82 | will be lost when reloading the saved file.<br /> |
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83 | |
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84 | <font color="red">Warning! To ensure accuracy of saved fit results, It is recommended to save the current grid |
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85 | before modifying it . </font> |
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86 | </p> |
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87 | |
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88 | |
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89 | <h5><font color="blue"><a name="load_batch"> Open Batch Results </a></font></h5> |
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90 | <p> |
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91 | Any <b> csv </b> file can be opened in the grid by selecting the <b> 'Open' </b> |
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92 | under the <b> 'File' </b> menu in the Grid Window <font color="blue"><a href="#figure4">(see Figure 4)</a></font>. |
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93 | All columns in the file will be displayed but insertion will not available. |
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94 | Insertion will be available only when at least one column will be |
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95 | removed from the grid. |
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96 | |
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97 | <br /><img src="file_menu.bmp" /><br /><br /> |
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98 | <a name="figure4"><u>Figure 4: MenuBar</u></a><br /> |
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99 | </p> |
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100 | |
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101 | |
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102 | <h5><font color="blue"><a name="plot"> Plot </a></font></h5> |
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103 | <p> |
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104 | To <b> plot </b> a column versus another, |
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105 | select one column at the time, click the <b> 'Add' </b> button next to the text control |
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106 | of X/Y -axis <b> Selection Range </b> |
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107 | to plot the value of this column on the X/Y axis. Alternatively, all available range can be selected by clicking the column letter (eg. B). |
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108 | Repeat the same procedure the next axis. Finally, click the <b> 'Plot' </b> button. |
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109 | When clicking on <b> Add </b> button, the grid |
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110 | will automatically fill the axis label, but different labels and units can be |
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111 | entered in the correct controls before clicking |
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112 | on the plot button.<br /> |
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113 | <b>X/Y -Axis Selection Range </b> can be edited manually. These text controls |
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114 | allows the following types of expression:<br /> |
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115 | |
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116 | operation can be <font color="#00CC33"><b>+</b></font>,<font color="#00CC33"> |
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117 | <b> -</b></font>, <font color="#00CC33"><b>*</b></font>, |
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118 | <font color="#00CC33"><b>/</b></font>, or <font color="#00CC33">pow</font>.<br /> <br /> |
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119 | |
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120 | 1) if the current axis label range is a function of 1 or more columns, |
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121 | write this type of expression: <br /> |
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122 | constant1 * <font color="#CC9933">column_name1</font> |
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123 | <font color="blue">[minimum row index : maximum row index]</font> |
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124 | <font color="#00CC33">operator</font> constant2 <font color="#00CC33"> |
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125 | <b>*</b></font> <font color="#CC9933">column_name2</font> |
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126 | <font color="blue">[minimum row index : maximum row index]</font> <br /> |
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127 | Example : <font color="#CC9933">radius</font>[2 : 5]<font color="#00CC33"><big>< |
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128 | b> -</b></big></font> 3 <font color="#00CC33"><b>*</b></font> |
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129 | <font color="#CC9933">scale</font>[2 : 5] <br /><br /> |
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130 | |
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131 | 2) if only some values of a given column are need but the range between |
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132 | the first row and the last row used is not continuous,<br />write |
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133 | the following expression in the text control: <br /> |
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134 | <font color="#CC9933">column_name1</font> |
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135 | <font color="blue">[minimum row index1 : maximum row index1]</font> |
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136 | <font color="#00CC33"><big><b> , </b></big></font> |
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137 | <font color="#CC9933">column_name1</font> |
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138 | <font color="blue">[minimum row index2 : maximum row index2]</font> <br /> |
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139 | Example : <font color="#CC9933">radius </font><font color="blue"> [2 : 5] </font> |
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140 | <font color="#00CC33"><big><b> , </b></big></font><font color="#CC9933">radius </font> |
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141 | <font color="blue">[10 : 25] </font><br /><br /> |
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142 | |
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143 | |
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144 | <b>Note: </b>Both text controls ( X and Y -axis Selection Range) need to be filled |
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145 | with valid entries for plotting to work <font color="blue"><a href="#figure5">(see Figure 5)</a></font>. |
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146 | |
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147 | <br /><br /><img src="plot_button.bmp" /><br /><br /> |
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148 | <a name="figure5"><u>Figure 5: Plotting</u></a><br /> |
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149 | |
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150 | </p> |
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151 | |
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152 | |
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153 | <h5><font color="blue"><a name="view"> View Column/Cell(s) </a></font></h5> |
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154 | <p> |
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155 | Select 1 or more cells from the same column, click the <b> 'View Fits' </b> |
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156 | button to display available curves. <br /> |
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157 | |
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158 | For example, select the cells of the <b> 'Chi2' </b> column, then click the <b> 'View Results' </b> |
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159 | button. The plots generates will represent the <b>residuals </b> plots. <br /> |
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160 | |
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161 | |
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162 | If you select any cells of the <b> 'Data' </b> column and click the |
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163 | <b> 'View Results' </b> button. It generates both |
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164 | <b> data and fits</b> in the graph <font color="blue"><a href="#figure6">(see Figure 6)</a></font>. <br /> |
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165 | |
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166 | <b>Alternatively, just click the column letter (eg. B) |
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167 | to choose all the available Data sets, then simply click the 'View Results' button to plot the data and fits. |
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168 | </b> |
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169 | <br /> |
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170 | <br /><br /><img src="view_button.bmp" /><br /><br /> |
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171 | <a name="figure6"><u>Figure 6: View Results</u></a><br /><br /> |
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172 | </p> |
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173 | |
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174 | |
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175 | </body> |
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176 | </html> |
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