[3e3ab46] | 1 | ################################################################################ |
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| 2 | #This software was developed by the University of Tennessee as part of the |
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| 3 | #Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
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| 4 | #project funded by the US National Science Foundation. |
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| 5 | # |
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| 6 | #See the license text in license.txt |
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| 7 | # |
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| 8 | #copyright 2009, University of Tennessee |
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| 9 | ################################################################################ |
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[e88ebfd] | 10 | import copy |
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[3e3ab46] | 11 | from sans.models.qsmearing import smear_selection |
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[d89f09b] | 12 | |
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[3e3ab46] | 13 | |
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| 14 | class FitProblemComponent(object): |
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| 15 | """ |
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| 16 | Inferface containing information to store data, model, range of data, etc... |
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| 17 | and retreive this information. This is an inferface |
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| 18 | for a fitProblem i.e relationship between data and model. |
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| 19 | """ |
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| 20 | def enable_smearing(self, flag=False): |
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| 21 | """ |
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| 22 | :param flag: bool.When flag is 1 get the computer smear value. When |
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| 23 | flag is 0 ingore smear value. |
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| 24 | """ |
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| 25 | def get_smearer(self): |
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| 26 | """ |
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| 27 | return smear object |
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| 28 | """ |
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| 29 | def save_model_name(self, name): |
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| 30 | """ |
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| 31 | """ |
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| 32 | def get_name(self): |
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| 33 | """ |
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| 34 | """ |
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| 35 | def set_model(self, model): |
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| 36 | """ |
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| 37 | associates each model with its new created name |
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| 38 | :param model: model selected |
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| 39 | :param name: name created for model |
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| 40 | """ |
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| 41 | def get_model(self): |
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| 42 | """ |
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| 43 | :return: saved model |
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| 44 | """ |
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| 45 | def set_theory_data(self, data): |
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| 46 | """ |
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| 47 | save a copy of the data select to fit |
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| 48 | :param data: data selected |
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| 49 | """ |
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| 50 | def get_theory_data(self): |
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| 51 | """ |
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| 52 | :return: list of data dList |
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| 53 | """ |
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| 54 | def set_fit_data(self, data): |
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| 55 | """ |
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| 56 | Store of list of data and create by create new fitproblem of each data |
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| 57 | id , if there was existing information about model, this information |
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| 58 | get copy to the new fitproblem |
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| 59 | :param data: list of data selected |
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| 60 | """ |
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| 61 | def get_fit_data(self): |
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| 62 | """ |
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| 63 | """ |
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| 64 | def set_model_param(self, name, value=None): |
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| 65 | """ |
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| 66 | Store the name and value of a parameter of this fitproblem's model |
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| 67 | :param name: name of the given parameter |
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| 68 | :param value: value of that parameter |
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| 69 | """ |
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| 70 | def get_model_param(self): |
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| 71 | """ |
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| 72 | return list of couple of parameter name and value |
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| 73 | """ |
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| 74 | def schedule_tofit(self, schedule=0): |
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| 75 | """ |
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| 76 | set schedule to true to decide if this fit must be performed |
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| 77 | """ |
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| 78 | def get_scheduled(self): |
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| 79 | """ |
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| 80 | return true or false if a problem as being schedule for fitting |
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| 81 | """ |
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| 82 | def set_range(self, qmin=None, qmax=None): |
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| 83 | """ |
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| 84 | set fitting range |
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| 85 | """ |
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| 86 | def get_range(self): |
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| 87 | """ |
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| 88 | :return: fitting range |
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| 89 | """ |
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[f7ef313] | 90 | def set_weight(self, flag=None): |
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[55bb249c] | 91 | """ |
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| 92 | set fitting range |
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| 93 | """ |
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| 94 | def get_weight(self): |
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| 95 | """ |
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| 96 | get fitting weight |
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| 97 | """ |
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[3e3ab46] | 98 | def clear_model_param(self): |
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| 99 | """ |
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| 100 | clear constraint info |
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| 101 | """ |
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| 102 | def set_fit_tab_caption(self, caption): |
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| 103 | """ |
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| 104 | store the caption of the page associated with object |
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| 105 | """ |
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| 106 | def get_fit_tab_caption(self): |
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| 107 | """ |
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| 108 | Return the caption of the page associated with object |
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| 109 | """ |
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| 110 | |
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| 111 | |
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| 112 | class FitProblemDictionary(FitProblemComponent, dict): |
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| 113 | """ |
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| 114 | This module implements a dictionary of fitproblem objects |
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| 115 | """ |
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| 116 | def __init__(self): |
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| 117 | FitProblemComponent.__init__(self) |
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| 118 | dict.__init__(self) |
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| 119 | ## the current model |
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| 120 | self.model = None |
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| 121 | ## if 1 this fit problem will be selected to fit , if 0 |
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| 122 | ## it will not be selected for fit |
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| 123 | self.schedule = 0 |
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| 124 | ##list containing parameter name and value |
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| 125 | self.list_param = [] |
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| 126 | ## fitting range |
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| 127 | self.qmin = None |
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| 128 | self.qmax = None |
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| 129 | self._smear_on = False |
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| 130 | self.scheduled = 0 |
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| 131 | self.fit_tab_caption = '' |
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| 132 | |
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| 133 | def enable_smearing(self, flag=False, fid=None): |
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| 134 | """ |
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| 135 | :param flag: bool.When flag is 1 get the computer smear value. When |
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| 136 | flag is 0 ingore smear value. |
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| 137 | """ |
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| 138 | self._smear_on = flag |
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| 139 | if fid is None: |
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| 140 | for value in self.itervalues(): |
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| 141 | value.enable_smearing(flag) |
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| 142 | else: |
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| 143 | if fid in self.iterkeys(): |
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| 144 | self[fid].enable_smearing(flag) |
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| 145 | |
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| 146 | def set_smearer(self, smearer, fid=None): |
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| 147 | """ |
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| 148 | save reference of smear object on fitdata |
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| 149 | :param smear: smear object from DataLoader |
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| 150 | """ |
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| 151 | if fid is None: |
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| 152 | for value in self.itervalues(): |
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| 153 | value.set_smearer(smearer) |
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| 154 | else: |
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| 155 | if fid in self.iterkeys(): |
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| 156 | self[fid].set_smearer(smearer) |
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| 157 | |
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| 158 | def get_smearer(self, fid=None): |
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| 159 | """ |
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| 160 | return smear object |
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| 161 | """ |
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| 162 | result = [] |
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| 163 | if fid is None: |
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| 164 | for value in self.itervalues(): |
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| 165 | result.append(value.get_smearer()) |
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| 166 | else: |
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| 167 | if fid in self.iterkeys(): |
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| 168 | result.append(self[fid].get_smearer()) |
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| 169 | return result |
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| 170 | |
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| 171 | def save_model_name(self, name, fid=None): |
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| 172 | """ |
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| 173 | """ |
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| 174 | if fid is None: |
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| 175 | for value in self.itervalues(): |
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| 176 | value.save_model_name(name) |
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| 177 | else: |
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| 178 | if fid in self.iterkeys(): |
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| 179 | self[fid].save_model_name(name) |
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| 180 | |
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| 181 | def get_name(self, fid=None): |
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| 182 | """ |
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| 183 | """ |
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| 184 | result = [] |
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| 185 | if fid is None: |
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| 186 | for value in self.itervalues(): |
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| 187 | result.append(value.get_name()) |
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| 188 | else: |
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| 189 | if fid in self.iterkeys(): |
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| 190 | result.append(self[fid].get_name()) |
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| 191 | return result |
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| 192 | |
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| 193 | def set_model(self, model, fid=None): |
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| 194 | """ |
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| 195 | associates each model with its new created name |
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| 196 | :param model: model selected |
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| 197 | :param name: name created for model |
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| 198 | """ |
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| 199 | self.model = model |
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| 200 | if fid is None: |
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| 201 | for value in self.itervalues(): |
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| 202 | value.set_model(self.model) |
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| 203 | else: |
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| 204 | if fid in self.iterkeys(): |
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| 205 | self[fid].set_model(self.model) |
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| 206 | |
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| 207 | def get_model(self, fid): |
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| 208 | """ |
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| 209 | :return: saved model |
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| 210 | """ |
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| 211 | if fid in self.iterkeys(): |
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| 212 | self[fid].get_model() |
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| 213 | |
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| 214 | def set_fit_tab_caption(self, caption): |
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| 215 | """ |
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| 216 | store the caption of the page associated with object |
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| 217 | """ |
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| 218 | self.fit_tab_caption = caption |
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| 219 | |
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| 220 | def get_fit_tab_caption(self): |
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| 221 | """ |
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| 222 | Return the caption of the page associated with object |
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| 223 | """ |
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| 224 | return self.fit_tab_caption |
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| 225 | |
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| 226 | def set_theory_data(self, fid, data=None): |
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| 227 | """ |
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| 228 | save a copy of the data select to fit |
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| 229 | :param data: data selected |
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| 230 | """ |
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| 231 | if fid in self.iterkeys(): |
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| 232 | self[fid].set_theory_data(data) |
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| 233 | |
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| 234 | def get_theory_data(self, fid): |
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| 235 | """ |
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| 236 | :return: list of data dList |
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| 237 | """ |
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| 238 | if fid in self.iterkeys(): |
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| 239 | return self[fid].get_theory_data() |
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| 240 | |
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| 241 | def add_data(self, data): |
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| 242 | """ |
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| 243 | Add data to the current dictionary of fitproblem. if data id does not |
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| 244 | exist create a new fit problem. |
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| 245 | :note: only data changes in the fit problem |
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| 246 | """ |
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| 247 | if data.id not in self.iterkeys(): |
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| 248 | self[data.id] = FitProblem() |
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| 249 | self[data.id].set_fit_data(data) |
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| 250 | |
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| 251 | def set_fit_data(self, data): |
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| 252 | """ |
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| 253 | save a copy of the data select to fit |
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| 254 | :param data: data selected |
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| 255 | |
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| 256 | """ |
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| 257 | self.clear() |
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| 258 | if data is None: |
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| 259 | data = [] |
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| 260 | for d in data: |
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| 261 | if (d is not None): |
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| 262 | if (d.id not in self.iterkeys()): |
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| 263 | self[d.id] = FitProblem() |
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| 264 | self[d.id].set_fit_data(d) |
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| 265 | self[d.id].set_model(self.model) |
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| 266 | self[d.id].set_range(self.qmin, self.qmax) |
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[55bb249c] | 267 | #self[d.id].set_smearer(self[d.id].get_smearer()) |
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[3e3ab46] | 268 | def get_fit_data(self, fid): |
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| 269 | """ |
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| 270 | |
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| 271 | return data for the given fitproblem id |
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| 272 | :param fid: is key representing a fitproblem. usually extract from data |
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| 273 | id |
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| 274 | """ |
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| 275 | if fid in self.iterkeys(): |
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| 276 | return self[fid].get_fit_data() |
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| 277 | |
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| 278 | def set_model_param(self, name, value=None, fid=None): |
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| 279 | """ |
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| 280 | Store the name and value of a parameter of this fitproblem's model |
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| 281 | :param name: name of the given parameter |
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| 282 | :param value: value of that parameter |
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| 283 | """ |
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| 284 | if fid is None: |
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| 285 | for value in self.itervalues(): |
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| 286 | value.set_model_param(name, value) |
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| 287 | else: |
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| 288 | if fid in self.iterkeys(): |
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| 289 | self[fid].set_model_param(name, value) |
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| 290 | |
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| 291 | def get_model_param(self, fid): |
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| 292 | """ |
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| 293 | return list of couple of parameter name and value |
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| 294 | """ |
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| 295 | if fid in self.iterkeys(): |
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| 296 | return self[fid].get_model_param() |
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| 297 | |
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| 298 | def schedule_tofit(self, schedule=0): |
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| 299 | """ |
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| 300 | set schedule to true to decide if this fit must be performed |
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| 301 | """ |
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| 302 | self.scheduled = schedule |
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| 303 | for value in self.itervalues(): |
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| 304 | value.schedule_tofit(schedule) |
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| 305 | |
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| 306 | def get_scheduled(self): |
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| 307 | """ |
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| 308 | return true or false if a problem as being schedule for fitting |
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| 309 | """ |
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| 310 | return self.scheduled |
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| 311 | |
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| 312 | def set_range(self, qmin=None, qmax=None, fid=None): |
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| 313 | """ |
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| 314 | set fitting range |
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| 315 | """ |
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| 316 | self.qmin = qmin |
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| 317 | self.qmax = qmax |
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| 318 | if fid is None: |
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| 319 | for value in self.itervalues(): |
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| 320 | value.set_range(self.qmin, self.qmax) |
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| 321 | else: |
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| 322 | if fid in self.iterkeys(): |
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| 323 | self[fid].value.set_range(self.qmin, self.qmax) |
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| 324 | |
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| 325 | def get_range(self, fid): |
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| 326 | """ |
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| 327 | :return: fitting range |
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| 328 | """ |
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| 329 | if fid in self.iterkeys(): |
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| 330 | return self[fid].get_range() |
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| 331 | |
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[f7ef313] | 332 | def set_weight(self, is2d, flag=None, fid=None): |
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[55bb249c] | 333 | """ |
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| 334 | fit weight |
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| 335 | """ |
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| 336 | if fid is None: |
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| 337 | for value in self.itervalues(): |
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[f7ef313] | 338 | value.set_weight(flag=flag, is2d=is2d) |
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[55bb249c] | 339 | else: |
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| 340 | if fid in self.iterkeys(): |
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[f7ef313] | 341 | self[fid].set_weight(flag=flag, is2d=is2d) |
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[55bb249c] | 342 | |
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| 343 | def get_weight(self, fid=None): |
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| 344 | """ |
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| 345 | return fit weight |
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| 346 | """ |
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| 347 | if fid in self.iterkeys(): |
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| 348 | return self[fid].get_weight() |
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| 349 | |
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[3e3ab46] | 350 | def clear_model_param(self, fid=None): |
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| 351 | """ |
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| 352 | clear constraint info |
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| 353 | """ |
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| 354 | if fid is None: |
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| 355 | for value in self.itervalues(): |
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| 356 | value.clear_model_param() |
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| 357 | else: |
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| 358 | if fid in self.iterkeys(): |
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| 359 | self[fid].clear_model_param() |
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| 360 | |
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| 361 | def get_fit_problem(self): |
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| 362 | """ |
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| 363 | return fitproblem contained in this dictionary |
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| 364 | """ |
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| 365 | return self.itervalues() |
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| 366 | |
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| 367 | def set_result(self, result): |
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| 368 | """ |
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| 369 | set a list of result |
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| 370 | """ |
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| 371 | self.result = result |
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| 372 | |
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| 373 | def get_result(self): |
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| 374 | """ |
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| 375 | get result |
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| 376 | """ |
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| 377 | return self.result |
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| 378 | |
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| 379 | |
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| 380 | class FitProblem(FitProblemComponent): |
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[d89f09b] | 381 | """ |
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[5062bbf] | 382 | FitProblem class allows to link a model with the new name created in _on_model, |
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| 383 | a name theory created with that model and the data fitted with the model. |
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| 384 | FitProblem is mostly used as value of the dictionary by fitting module. |
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[d89f09b] | 385 | """ |
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| 386 | def __init__(self): |
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[3e3ab46] | 387 | FitProblemComponent.__init__(self) |
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[d89f09b] | 388 | """ |
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[5062bbf] | 389 | contains information about data and model to fit |
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[d89f09b] | 390 | """ |
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[925a30e] | 391 | ## data used for fitting |
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[6bbeacd4] | 392 | self.fit_data = None |
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| 393 | self.theory_data = None |
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[05325ec4] | 394 | # original data: should not be modified |
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| 395 | self.original_data = None |
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[2140e68] | 396 | ## the current model |
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| 397 | self.model = None |
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[925a30e] | 398 | ## if 1 this fit problem will be selected to fit , if 0 |
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| 399 | ## it will not be selected for fit |
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[6bbeacd4] | 400 | self.schedule = 0 |
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[925a30e] | 401 | ##list containing parameter name and value |
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[6bbeacd4] | 402 | self.list_param = [] |
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[925a30e] | 403 | ## smear object to smear or not data1D |
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[7afcae8] | 404 | self.smearer_computed = False |
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[3e3ab46] | 405 | self.smearer_enable = False |
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| 406 | self.smearer_computer_value = None |
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[2140e68] | 407 | ## fitting range |
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| 408 | self.qmin = None |
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| 409 | self.qmax = None |
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[55bb249c] | 410 | # fit weight |
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| 411 | self.weight = None |
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[08b9c6c8] | 412 | |
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[ba1f0b2] | 413 | |
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[3e3ab46] | 414 | def enable_smearing(self, flag=False): |
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[9853ad0] | 415 | """ |
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[3e3ab46] | 416 | :param flag: bool.When flag is 1 get the computer smear value. When |
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| 417 | flag is 0 ingore smear value. |
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[9853ad0] | 418 | """ |
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[3e3ab46] | 419 | self.smearer_enable = flag |
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[9853ad0] | 420 | |
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[08b9c6c8] | 421 | def set_smearer(self, smearer): |
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[925a30e] | 422 | """ |
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[5062bbf] | 423 | save reference of smear object on fitdata |
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| 424 | |
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| 425 | :param smear: smear object from DataLoader |
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| 426 | |
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[925a30e] | 427 | """ |
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[3e3ab46] | 428 | self.smearer_computer_value = smearer |
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[925a30e] | 429 | |
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[08b9c6c8] | 430 | def get_smearer(self): |
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[925a30e] | 431 | """ |
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[5062bbf] | 432 | return smear object |
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[925a30e] | 433 | """ |
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[3e3ab46] | 434 | if not self.smearer_enable: |
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| 435 | return None |
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[7afcae8] | 436 | if not self.smearer_computed: |
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[3e3ab46] | 437 | #smeari_selection should be call only once per fitproblem |
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[7afcae8] | 438 | self.smearer_computer_value = smear_selection(self.fit_data, |
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[3e3ab46] | 439 | self.model) |
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[7afcae8] | 440 | self.smearer_computed = True |
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[3e3ab46] | 441 | return self.smearer_computer_value |
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[08b9c6c8] | 442 | |
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[5062bbf] | 443 | def save_model_name(self, name): |
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| 444 | """ |
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| 445 | """ |
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[bb18ef1] | 446 | self.name_per_page= name |
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| 447 | |
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| 448 | def get_name(self): |
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[5062bbf] | 449 | """ |
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| 450 | """ |
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[bb18ef1] | 451 | return self.name_per_page |
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[08b9c6c8] | 452 | |
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[8aa5788] | 453 | def set_model(self, model): |
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[d89f09b] | 454 | """ |
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[5062bbf] | 455 | associates each model with its new created name |
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| 456 | :param model: model selected |
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| 457 | :param name: name created for model |
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[d89f09b] | 458 | """ |
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[7afcae8] | 459 | self.model = model |
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| 460 | self.smearer_computer_value = smear_selection(self.fit_data, |
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| 461 | self.model) |
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| 462 | self.smearer_computed = True |
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[bb18ef1] | 463 | |
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[2140e68] | 464 | def get_model(self): |
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[5062bbf] | 465 | """ |
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| 466 | :return: saved model |
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| 467 | """ |
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[2140e68] | 468 | return self.model |
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| 469 | |
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[6bbeacd4] | 470 | def set_theory_data(self, data): |
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[d89f09b] | 471 | """ |
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[5062bbf] | 472 | save a copy of the data select to fit |
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| 473 | |
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| 474 | :param data: data selected |
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| 475 | |
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[d89f09b] | 476 | """ |
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[e88ebfd] | 477 | self.theory_data = copy.deepcopy(data) |
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[ba1f0b2] | 478 | |
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[3e3ab46] | 479 | |
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[ba1f0b2] | 480 | |
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[6bbeacd4] | 481 | def get_theory_data(self): |
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[5062bbf] | 482 | """ |
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[3e3ab46] | 483 | :return: theory generated with the current model and data of this class |
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[5062bbf] | 484 | """ |
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[6bbeacd4] | 485 | return self.theory_data |
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[5062bbf] | 486 | |
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[3e3ab46] | 487 | def set_fit_data(self, data): |
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[2a8fac1] | 488 | """ |
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[3e3ab46] | 489 | Store data associated with this class |
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| 490 | :param data: list of data selected |
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[2a8fac1] | 491 | """ |
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[05325ec4] | 492 | # original data: should not be modified |
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| 493 | self.original_data = copy.deepcopy(data) |
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| 494 | # fit data: used for fit and can be modified for convenience |
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[55bb249c] | 495 | self.fit_data = copy.deepcopy(data) |
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[7afcae8] | 496 | self.smearer_computer_value = smear_selection(self.fit_data, |
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| 497 | self.model) |
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| 498 | self.smearer_computed = True |
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[f7ef313] | 499 | |
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[2a8fac1] | 500 | def get_fit_data(self): |
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[5062bbf] | 501 | """ |
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[3e3ab46] | 502 | :return: data associate with this class |
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[5062bbf] | 503 | """ |
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[2a8fac1] | 504 | return self.fit_data |
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| 505 | |
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[f7ef313] | 506 | def set_weight(self, is2d, flag=None): |
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[55bb249c] | 507 | """ |
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[f7ef313] | 508 | Received flag and compute error on data. |
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| 509 | :param flag: flag to transform error of data. |
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| 510 | :param is2d: flag to distinguish 1D to 2D Data |
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[55bb249c] | 511 | """ |
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[f7ef313] | 512 | from .utils import get_weight |
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[05325ec4] | 513 | # send original data for weighting |
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| 514 | self.weight = get_weight(data=self.original_data, is2d=is2d, flag=flag) |
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[55bb249c] | 515 | if is2d: |
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| 516 | self.fit_data.err_data = self.weight |
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| 517 | else: |
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| 518 | self.fit_data.dy = self.weight |
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| 519 | |
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| 520 | def get_weight(self): |
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| 521 | """ |
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| 522 | returns weight array |
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| 523 | """ |
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| 524 | return self.weight |
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| 525 | |
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[2140e68] | 526 | def set_model_param(self,name,value=None): |
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[d89f09b] | 527 | """ |
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[5062bbf] | 528 | Store the name and value of a parameter of this fitproblem's model |
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| 529 | :param name: name of the given parameter |
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| 530 | :param value: value of that parameter |
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[d89f09b] | 531 | """ |
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[8e81af0] | 532 | self.list_param.append([name,value]) |
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[925a30e] | 533 | |
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[00561739] | 534 | def get_model_param(self): |
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| 535 | """ |
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[5062bbf] | 536 | return list of couple of parameter name and value |
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[00561739] | 537 | """ |
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[8e81af0] | 538 | return self.list_param |
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[d89f09b] | 539 | |
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[948add7] | 540 | def schedule_tofit(self, schedule=0): |
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[3b19ac9] | 541 | """ |
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[5062bbf] | 542 | set schedule to true to decide if this fit must be performed |
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[3b19ac9] | 543 | """ |
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[3e3ab46] | 544 | self.schedule = schedule |
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[6bcdad1] | 545 | |
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[3b19ac9] | 546 | def get_scheduled(self): |
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[5062bbf] | 547 | """ |
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| 548 | return true or false if a problem as being schedule for fitting |
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| 549 | """ |
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[3b19ac9] | 550 | return self.schedule |
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[925a30e] | 551 | |
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[2140e68] | 552 | def set_range(self, qmin=None, qmax=None): |
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| 553 | """ |
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[3e3ab46] | 554 | set fitting range |
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| 555 | :param qmin: minimum value to consider for the fit range |
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| 556 | :param qmax: maximum value to consider for the fit range |
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[2140e68] | 557 | """ |
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| 558 | self.qmin = qmin |
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| 559 | self.qmax = qmax |
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| 560 | |
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| 561 | def get_range(self): |
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| 562 | """ |
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[5062bbf] | 563 | :return: fitting range |
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| 564 | |
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[2140e68] | 565 | """ |
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| 566 | return self.qmin, self.qmax |
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[925a30e] | 567 | |
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[9e27de9] | 568 | def clear_model_param(self): |
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| 569 | """ |
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| 570 | clear constraint info |
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| 571 | """ |
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[3e3ab46] | 572 | self.list_param = [] |
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[6bbeacd4] | 573 | |
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| 574 | def set_fit_tab_caption(self, caption): |
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| 575 | """ |
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| 576 | """ |
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| 577 | self.fit_tab_caption = str(caption) |
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| 578 | |
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| 579 | def get_fit_tab_caption(self): |
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| 580 | """ |
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| 581 | """ |
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| 582 | return self.fit_tab_caption |
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[ba1f0b2] | 583 | |
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[3e3ab46] | 584 | |
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[5062bbf] | 585 | |
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