| 1 | import os |
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| 2 | import sys |
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| 3 | import wx |
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| 4 | import numpy as np |
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| 5 | import matplotlib |
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| 6 | matplotlib.interactive(False) |
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| 7 | #Use the WxAgg back end. The Wx one takes too long to render |
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| 8 | matplotlib.use('WXAgg') |
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| 9 | from sans.guiframe.local_perspectives.plotting.SimplePlot import PlotFrame |
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| 10 | #import matplotlib.pyplot as plt |
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| 11 | import matplotlib.image as mpimg |
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| 12 | import matplotlib.colors as colors |
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| 13 | from sans.guiframe.events import StatusEvent |
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| 14 | from sans.perspectives.calculator.calculator_widgets import InputTextCtrl |
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| 15 | from sans.dataloader.data_info import Data2D |
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| 16 | from sans.dataloader.data_info import Detector |
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| 17 | from sans.dataloader.manipulations import reader2D_converter |
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| 18 | _BOX_WIDTH = 60 |
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| 19 | if sys.platform.count("win32") > 0: |
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| 20 | _DIALOG_WIDTH = 400 |
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| 21 | else: |
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| 22 | _DIALOG_WIDTH = 480 |
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| 23 | |
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| 24 | class ImageView: |
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| 25 | """ |
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| 26 | Open a file dialog to allow the user to select a given file. |
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| 27 | Display the loaded data if available. |
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| 28 | """ |
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| 29 | def __init__(self, parent=None): |
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| 30 | """ |
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| 31 | Init |
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| 32 | """ |
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| 33 | self.parent = parent |
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| 34 | |
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| 35 | def load(self): |
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| 36 | """ |
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| 37 | load image files |
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| 38 | """ |
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| 39 | parent = self.parent |
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| 40 | if parent == None: |
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| 41 | location = os.getcwd() |
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| 42 | else: |
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| 43 | location = parent._default_save_location |
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| 44 | path_list = self.choose_data_file(location=location) |
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| 45 | if path_list == None: |
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| 46 | return |
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| 47 | if len(path_list) >= 0 and not(path_list[0]is None): |
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| 48 | if parent != None: |
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| 49 | parent._default_save_location = os.path.dirname(path_list[0]) |
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| 50 | err_msg = '' |
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| 51 | for file_path in path_list: |
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| 52 | basename = os.path.basename(file_path) |
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| 53 | _, extension = os.path.splitext(basename) |
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| 54 | try: |
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| 55 | img = mpimg.imread(file_path) |
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| 56 | is_png = extension.lower() == '.png' |
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| 57 | plot_frame = ImageFrame(parent, -1, basename, img) |
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| 58 | plot_frame.Show(False) |
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| 59 | #plot_frame.im_show(img) |
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| 60 | ax = plot_frame.plotpanel |
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| 61 | if not is_png: |
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| 62 | ax.subplot.set_ylim(ax.subplot.get_ylim()[::-1]) |
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| 63 | ax.subplot.set_xlabel('x [pixel]') |
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| 64 | ax.subplot.set_ylabel('y [pixel]') |
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| 65 | ax.figure.subplots_adjust(left=0.15, bottom=0.1, |
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| 66 | right=0.95, top=0.95) |
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| 67 | plot_frame.SetTitle('Picture -- %s --'% basename) |
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| 68 | plot_frame.Show(True) |
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| 69 | if parent != None: |
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| 70 | parent.put_icon(plot_frame) |
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| 71 | except: |
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| 72 | err_msg += "Failed to load '%s'.\n"% basename |
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| 73 | if err_msg: |
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| 74 | if parent is not None: |
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| 75 | wx.PostEvent(parent, StatusEvent(status=err_msg, info="error")) |
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| 76 | else: |
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| 77 | print err_msg |
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| 78 | |
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| 79 | |
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| 80 | def choose_data_file(self, location=None): |
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| 81 | """ |
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| 82 | Open a file dialog to allow loading a file |
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| 83 | """ |
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| 84 | parent = self.parent |
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| 85 | path = None |
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| 86 | if location == None: |
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| 87 | location = os.getcwd() |
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| 88 | wlist = '' |
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| 89 | elist = ["All images (*.png, *.bmp, *.gif, *.jpg, *.tif, *.tiff) | \ |
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| 90 | *.png; *.bmp; *.gif; *.jpg; *.tif; *.tiff", |
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| 91 | "PNG files (*.png) | *.png", |
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| 92 | "BMP files (*.bmp) | *.bmp", |
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| 93 | "GIF files (*.gif) | *.gif", |
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| 94 | "JPG files (*.jpg) | *.jpg", |
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| 95 | "TIF files (*.tif) | *.tif", |
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| 96 | "TIFF files (*.tiff) | *.tiff"] |
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| 97 | wlist = '|'.join(elist) |
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| 98 | style = wx.OPEN|wx.FD_MULTIPLE |
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| 99 | dlg = wx.FileDialog(parent, "Image Viewer: Choose a image file", |
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| 100 | location, "", wlist, style=style) |
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| 101 | if dlg.ShowModal() == wx.ID_OK: |
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| 102 | path = dlg.GetPaths() |
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| 103 | else: |
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| 104 | return None |
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| 105 | dlg.Destroy() |
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| 106 | return path |
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| 107 | |
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| 108 | class ImageFrame(PlotFrame): |
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| 109 | """ |
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| 110 | Frame for simple plot |
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| 111 | """ |
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| 112 | def __init__(self, parent, id, title, image=None, scale='log_{10}', |
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| 113 | size=wx.Size(550, 470)): |
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| 114 | """ |
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| 115 | comment |
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| 116 | :Param data: image array got from imread() of matplotlib [narray] |
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| 117 | :param parent: parent panel/container |
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| 118 | """ |
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| 119 | # Initialize the Frame object |
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| 120 | PlotFrame.__init__(self, parent, id, title, scale, size) |
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| 121 | self.parent = parent |
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| 122 | self.data = image |
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| 123 | self.file_name = title |
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| 124 | |
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| 125 | menu = wx.Menu() |
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| 126 | id = wx.NewId() |
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| 127 | item = wx.MenuItem(menu, id, "&Convert to Data") |
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| 128 | menu.AppendItem(item) |
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| 129 | wx.EVT_MENU(self, id, self.on_set_data) |
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| 130 | self.menu_bar.Append(menu, "&Image") |
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| 131 | |
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| 132 | menu_help = wx.Menu() |
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| 133 | id = wx.NewId() |
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| 134 | item = wx.MenuItem(menu_help, id, "&HowTo") |
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| 135 | menu_help.AppendItem(item) |
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| 136 | wx.EVT_MENU(self, id, self.on_help) |
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| 137 | self.menu_bar.Append(menu_help, "&Help") |
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| 138 | |
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| 139 | self.SetMenuBar(self.menu_bar) |
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| 140 | self.im_show(image) |
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| 141 | |
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| 142 | def on_set_data(self, event): |
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| 143 | """ |
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| 144 | Rescale the x y range, make 2D data and send it to data explore |
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| 145 | """ |
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| 146 | title = self.file_name |
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| 147 | self.panel = SetDialog(parent=self, title=title, image=self.data) |
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| 148 | self.panel.ShowModal() |
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| 149 | |
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| 150 | def on_help(self, event): |
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| 151 | """ |
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| 152 | Image Viewer help panel |
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| 153 | """ |
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| 154 | from sans.perspectives.calculator.help_panel import HelpWindow |
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| 155 | # Get models help model_function path |
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| 156 | import sans.perspectives.calculator as calmedia |
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| 157 | |
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| 158 | media = calmedia.get_data_path(media='media') |
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| 159 | path = os.path.join(media,"load_image_help.html") |
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| 160 | name = "Image Viewer" |
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| 161 | frame = HelpWindow(self, -1, title=' Help: Image Viewer', |
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| 162 | pageToOpen=path, size=(640, 450)) |
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| 163 | try: |
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| 164 | frame.splitter.DetachWindow(frame.lpanel) |
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| 165 | # Display only the right side one |
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| 166 | frame.lpanel.Hide() |
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| 167 | frame.Show(True) |
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| 168 | except: |
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| 169 | frame.Destroy() |
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| 170 | msg = 'Display Error\n' |
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| 171 | info = "Info" |
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| 172 | wx.MessageBox(msg, info) |
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| 173 | |
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| 174 | class SetDialog(wx.Dialog): |
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| 175 | """ |
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| 176 | Dialog for Data Set |
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| 177 | """ |
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| 178 | def __init__(self, parent, id=-1, title="Convert to Data", image=None, |
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| 179 | size=(_DIALOG_WIDTH, 270)): |
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| 180 | wx.Dialog.__init__(self, parent, id, title, size) |
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| 181 | # parent |
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| 182 | self.parent = parent |
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| 183 | self.base = parent.parent |
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| 184 | self.title = title |
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| 185 | self.image = np.array(image) |
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| 186 | self.z_ctrl = None |
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| 187 | self.xy_ctrls = [] |
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| 188 | self.is_png = self._get_is_png() |
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| 189 | self._build_layout() |
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| 190 | my_title = "Convert Image to Data - %s -"% self.title |
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| 191 | self.SetTitle(my_title) |
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| 192 | self.SetSize(size) |
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| 193 | |
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| 194 | def _get_is_png(self): |
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| 195 | """ |
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| 196 | Get if the image file is png |
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| 197 | """ |
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| 198 | _, extension = os.path.splitext(self.title) |
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| 199 | return extension.lower() == '.png' |
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| 200 | |
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| 201 | def _build_layout(self): |
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| 202 | """ |
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| 203 | Layout |
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| 204 | """ |
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| 205 | vbox = wx.BoxSizer(wx.VERTICAL) |
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| 206 | zbox = wx.BoxSizer(wx.HORIZONTAL) |
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| 207 | xbox = wx.BoxSizer(wx.HORIZONTAL) |
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| 208 | ybox = wx.BoxSizer(wx.HORIZONTAL) |
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| 209 | btnbox = wx.BoxSizer(wx.VERTICAL) |
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| 210 | |
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| 211 | sb_title = wx.StaticBox(self, -1, 'Transform Axes') |
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| 212 | boxsizer = wx.StaticBoxSizer(sb_title, wx.VERTICAL) |
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| 213 | z_title = wx.StaticText(self, -1, 'z values (range: 0 - 255) to:') |
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| 214 | ztime_title = wx.StaticText(self, -1, 'z *') |
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| 215 | x_title = wx.StaticText(self, -1, 'x values from pixel # to:') |
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| 216 | xmin_title = wx.StaticText(self, -1, 'xmin:') |
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| 217 | xmax_title = wx.StaticText(self, -1, 'xmax:') |
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| 218 | y_title = wx.StaticText(self, -1, 'y values from pixel # to:') |
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| 219 | ymin_title = wx.StaticText(self, -1, 'ymin: ') |
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| 220 | ymax_title = wx.StaticText(self, -1, 'ymax:') |
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| 221 | z_ctl = InputTextCtrl(self, -1, size=(_BOX_WIDTH , 20), |
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| 222 | style=wx.TE_PROCESS_ENTER) |
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| 223 | |
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| 224 | xmin_ctl = InputTextCtrl(self, -1, size=(_BOX_WIDTH, 20), |
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| 225 | style=wx.TE_PROCESS_ENTER) |
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| 226 | xmax_ctl = InputTextCtrl(self, -1, size=(_BOX_WIDTH, 20), |
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| 227 | style=wx.TE_PROCESS_ENTER) |
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| 228 | ymin_ctl = InputTextCtrl(self, -1, size=(_BOX_WIDTH, 20), |
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| 229 | style=wx.TE_PROCESS_ENTER) |
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| 230 | ymax_ctl = InputTextCtrl(self, -1, size=(_BOX_WIDTH, 20), |
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| 231 | style=wx.TE_PROCESS_ENTER) |
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| 232 | z_ctl.SetValue('1.0') |
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| 233 | xmin_ctl.SetValue('-0.3') |
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| 234 | xmax_ctl.SetValue('0.3') |
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| 235 | ymin_ctl.SetValue('-0.3') |
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| 236 | ymax_ctl.SetValue('0.3') |
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| 237 | z_ctl.Bind(wx.EVT_TEXT, self._on_z_enter) |
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| 238 | xmin_ctl.Bind(wx.EVT_TEXT, self._onparam) |
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| 239 | xmax_ctl.Bind(wx.EVT_TEXT, self._onparam) |
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| 240 | ymin_ctl.Bind(wx.EVT_TEXT, self._onparam) |
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| 241 | ymax_ctl.Bind(wx.EVT_TEXT, self._onparam) |
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| 242 | xbox.AddMany([(x_title , 0, wx.LEFT, 0), |
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| 243 | (xmin_title , 0, wx.LEFT, 10), |
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| 244 | (xmin_ctl , 0, wx.LEFT, 10), |
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| 245 | (xmax_title , 0, wx.LEFT, 10), |
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| 246 | (xmax_ctl , 0, wx.LEFT, 10)]) |
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| 247 | ybox.AddMany([(y_title , 0, wx.LEFT, 0), |
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| 248 | (ymin_title , 0, wx.LEFT, 10), |
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| 249 | (ymin_ctl , 0, wx.LEFT, 10), |
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| 250 | (ymax_title , 0, wx.LEFT, 10), |
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| 251 | (ymax_ctl , 0, wx.LEFT, 10)]) |
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| 252 | zbox.AddMany([(z_title , 0, wx.LEFT, 0), |
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| 253 | (ztime_title, 0, wx.LEFT, 10), |
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| 254 | (z_ctl , 0, wx.LEFT, 7), |
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| 255 | ]) |
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| 256 | msg = "The data rescaled will show up in the Data Explorer. \n" |
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| 257 | msg += "*Note: Recommend to use an image with 8 bit Grey \n" |
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| 258 | msg += " scale (and with No. of pixels < 300 x 300).\n" |
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| 259 | msg += " Otherwise, z = 0.299R + 0.587G + 0.114B." |
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| 260 | note_txt = wx.StaticText(self, -1, msg) |
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| 261 | note_txt.SetForegroundColour("black") |
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| 262 | hbox = wx.BoxSizer(wx.HORIZONTAL) |
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| 263 | okButton = wx.Button(self, -1, 'OK') |
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| 264 | okButton.Bind(wx.EVT_BUTTON, self.on_set) |
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| 265 | cancelButton = wx.Button(self, -1, 'Cancel') |
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| 266 | cancelButton.Bind(wx.EVT_BUTTON, self.OnClose) |
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| 267 | btnbox.Add(okButton, 0, wx.LEFT | wx.BOTTOM, 5) |
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| 268 | btnbox.Add(cancelButton, 0, wx.LEFT | wx.TOP, 5) |
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| 269 | hbox.Add(note_txt, 0, wx.LEFT, 5) |
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| 270 | hbox.Add(btnbox, 0, wx.LEFT, 15) |
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| 271 | vbox.Add((10, 15)) |
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| 272 | boxsizer.Add(xbox, 1, wx.LEFT | wx.BOTTOM, 5) |
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| 273 | boxsizer.Add(ybox, 1, wx.LEFT | wx.BOTTOM, 5) |
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| 274 | boxsizer.Add(zbox, 1, wx.LEFT | wx.BOTTOM, 5) |
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| 275 | vbox.Add(boxsizer, 0, wx.LEFT, 20) |
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| 276 | vbox.Add(hbox, 0, wx.LEFT | wx.TOP, 15) |
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| 277 | okButton.SetFocus() |
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| 278 | # set sizer |
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| 279 | self.SetSizer(vbox) |
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| 280 | #pos = self.parent.GetPosition() |
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| 281 | #self.SetPosition(pos) |
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| 282 | self.z_ctrl = z_ctl |
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| 283 | self.xy_ctrls = [[xmin_ctl, xmax_ctl], [ymin_ctl, ymax_ctl]] |
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| 284 | |
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| 285 | def _onparamEnter(self, event=None): |
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| 286 | """ |
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| 287 | By pass original txtcrl binding |
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| 288 | """ |
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| 289 | pass |
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| 290 | |
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| 291 | def _onparam(self, event=None): |
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| 292 | """ |
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| 293 | Set to default |
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| 294 | """ |
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| 295 | item = event.GetEventObject() |
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| 296 | self._check_ctrls(item) |
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| 297 | |
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| 298 | def _check_ctrls(self, item, is_button=False): |
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| 299 | """ |
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| 300 | """ |
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| 301 | flag = True |
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| 302 | item.SetBackgroundColour("white") |
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| 303 | try: |
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| 304 | val = float(item.GetValue()) |
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| 305 | if val < -10.0 or val > 10.0: |
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| 306 | item.SetBackgroundColour("pink") |
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| 307 | item.Refresh() |
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| 308 | flag = False |
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| 309 | except: |
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| 310 | item.SetBackgroundColour("pink") |
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| 311 | item.Refresh() |
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| 312 | flag = False |
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| 313 | if not flag and is_button: |
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| 314 | err_msg = "The allowed range of the min and max values are \n" |
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| 315 | err_msg += "between -10 and 10." |
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| 316 | if self.base is not None: |
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| 317 | wx.PostEvent(self.base, StatusEvent(status=err_msg, |
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| 318 | info="error")) |
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| 319 | else: |
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| 320 | print err_msg |
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| 321 | return flag |
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| 322 | |
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| 323 | def _on_z_enter(self, event= None): |
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| 324 | """ |
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| 325 | On z factor enter |
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| 326 | """ |
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| 327 | item = event.GetEventObject() |
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| 328 | self._check_z_ctrl(item) |
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| 329 | |
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| 330 | def _check_z_ctrl(self, item, is_button=False): |
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| 331 | """ |
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| 332 | """ |
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| 333 | flag = True |
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| 334 | item.SetBackgroundColour("white") |
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| 335 | try: |
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| 336 | val = float(item.GetValue()) |
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| 337 | if val <= 0: |
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| 338 | item.SetBackgroundColour("pink") |
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| 339 | item.Refresh() |
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| 340 | flag = False |
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| 341 | except: |
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| 342 | item.SetBackgroundColour("pink") |
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| 343 | item.Refresh() |
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| 344 | flag = False |
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| 345 | if not flag and is_button: |
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| 346 | err_msg = "The z scale value should be larger than 0." |
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| 347 | if self.base is not None: |
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| 348 | wx.PostEvent(self.base, StatusEvent(status=err_msg, |
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| 349 | info="error")) |
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| 350 | else: |
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| 351 | print err_msg |
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| 352 | return flag |
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| 353 | |
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| 354 | def on_set(self, event): |
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| 355 | """ |
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| 356 | Set image as data |
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| 357 | """ |
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| 358 | event.Skip() |
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| 359 | # Check the textctrl values |
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| 360 | for item_list in self.xy_ctrls: |
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| 361 | for item in item_list: |
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| 362 | if not self._check_ctrls(item, True): |
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| 363 | return |
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| 364 | if not self._check_z_ctrl(self.z_ctrl, True): |
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| 365 | return |
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| 366 | try: |
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| 367 | image = self.image |
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| 368 | xmin = float(self.xy_ctrls[0][0].GetValue()) |
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| 369 | xmax = float(self.xy_ctrls[0][1].GetValue()) |
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| 370 | ymin = float(self.xy_ctrls[1][0].GetValue()) |
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| 371 | ymax = float(self.xy_ctrls[1][1].GetValue()) |
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| 372 | zscale = float(self.z_ctrl.GetValue()) |
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| 373 | self.convert_image(image, xmin, xmax, ymin, ymax, zscale) |
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| 374 | except: |
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| 375 | err_msg = "Error occurred while converting Image to Data." |
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| 376 | if self.base is not None: |
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| 377 | wx.PostEvent(self.base, StatusEvent(status=err_msg, |
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| 378 | info="error")) |
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| 379 | else: |
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| 380 | print err_msg |
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| 381 | |
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| 382 | self.OnClose(event) |
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| 383 | |
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| 384 | def convert_image(self, rgb, xmin, xmax, ymin, ymax, zscale): |
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| 385 | """ |
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| 386 | Convert image to data2D |
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| 387 | """ |
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| 388 | x_len = len(rgb[0]) |
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| 389 | y_len = len(rgb) |
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| 390 | x_vals = np.linspace(xmin, xmax, num=x_len) |
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| 391 | y_vals = np.linspace(ymin, ymax, num=y_len) |
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| 392 | # Instantiate data object |
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| 393 | output = Data2D() |
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| 394 | output.filename = os.path.basename(self.title) |
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| 395 | output.id = output.filename |
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| 396 | detector = Detector() |
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| 397 | detector.pixel_size.x = None |
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| 398 | detector.pixel_size.y = None |
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| 399 | # Store the sample to detector distance |
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| 400 | detector.distance = None |
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| 401 | output.detector.append(detector) |
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| 402 | # Initiazed the output data object |
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| 403 | output.data = zscale * self.rgb2gray(rgb) |
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| 404 | output.err_data = np.zeros([x_len, y_len]) |
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| 405 | output.mask = np.ones([x_len, y_len], dtype=bool) |
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| 406 | output.xbins = x_len |
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| 407 | output.ybins = y_len |
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| 408 | output.x_bins = x_vals |
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| 409 | output.y_bins = y_vals |
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| 410 | output.qx_data = np.array(x_vals) |
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| 411 | output.qy_data = np.array(y_vals) |
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| 412 | output.xmin = xmin |
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| 413 | output.xmax = xmax |
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| 414 | output.ymin = ymin |
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| 415 | output.ymax = ymax |
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| 416 | output.xaxis('\\rm{Q_{x}}', '\AA^{-1}') |
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| 417 | output.yaxis('\\rm{Q_{y}}', '\AA^{-1}') |
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| 418 | # Store loading process information |
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| 419 | output.meta_data['loader'] = self.title.split('.')[-1] + "Reader" |
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| 420 | output.is_data = True |
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| 421 | output = reader2D_converter(output) |
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| 422 | if self.base != None: |
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| 423 | data = self.base.create_gui_data(output, self.title) |
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| 424 | self.base.add_data({data.id:data}) |
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| 425 | |
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| 426 | def rgb2gray(self, rgb): |
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| 427 | """ |
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| 428 | RGB to Grey |
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| 429 | """ |
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| 430 | if self.is_png: |
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| 431 | # png image limits: 0 to 1, others 0 to 255 |
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| 432 | #factor = 255.0 |
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| 433 | rgb = rgb[::-1] |
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| 434 | if rgb.ndim == 2: |
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| 435 | grey = np.rollaxis(rgb, axis = 0) |
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| 436 | else: |
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| 437 | red, green, blue = np.rollaxis(rgb[...,:3], axis = -1) |
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| 438 | grey = 0.299 * red + 0.587 * green + 0.114 * blue |
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| 439 | max_i = rgb.max() |
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| 440 | factor = 255.0 / max_i |
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| 441 | grey *= factor |
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| 442 | return np.array(grey) |
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| 443 | |
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| 444 | def OnClose(self, event): |
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| 445 | """ |
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| 446 | Close event |
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| 447 | """ |
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| 448 | # clear event |
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| 449 | event.Skip() |
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| 450 | self.Destroy() |
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| 451 | |
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| 452 | if __name__ == "__main__": |
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| 453 | app = wx.App() |
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| 454 | ImageView(None).load() |
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| 455 | app.MainLoop() |
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| 456 | |
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| 457 | |
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