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51 | <h1>Source code for sas.models.CoreFourShellModel</h1><div class="highlight"><pre> |
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52 | <span class="c">##############################################################################</span> |
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53 | <span class="c"># This software was developed by the University of Tennessee as part of the</span> |
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54 | <span class="c"># Distributed Data Analysis of Neutron Scattering Experiments (DANSE)</span> |
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55 | <span class="c"># project funded by the US National Science Foundation.</span> |
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56 | <span class="c">#</span> |
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57 | <span class="c"># If you use DANSE applications to do scientific research that leads to</span> |
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58 | <span class="c"># publication, we ask that you acknowledge the use of the software with the</span> |
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59 | <span class="c"># following sentence:</span> |
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60 | <span class="c">#</span> |
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61 | <span class="c"># This work benefited from DANSE software developed under NSF award DMR-0520547</span> |
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62 | <span class="c">#</span> |
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63 | <span class="c"># Copyright 2008-2011, University of Tennessee</span> |
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64 | <span class="c">##############################################################################</span> |
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65 | |
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66 | <span class="sd">""" </span> |
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67 | <span class="sd">Provide functionality for a C extension model</span> |
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68 | |
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69 | <span class="sd">.. WARNING::</span> |
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70 | |
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71 | <span class="sd"> THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY</span> |
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72 | <span class="sd"> DO NOT MODIFY THIS FILE, MODIFY</span> |
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73 | <span class="sd"> src/sas/models/include/corefourshell.h</span> |
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74 | <span class="sd"> AND RE-RUN THE GENERATOR SCRIPT</span> |
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75 | <span class="sd">"""</span> |
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76 | |
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77 | <span class="kn">from</span> <span class="nn">sas.models.BaseComponent</span> <span class="kn">import</span> <span class="n">BaseComponent</span> |
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78 | <span class="kn">from</span> <span class="nn">sas.models.sas_extension.c_models</span> <span class="kn">import</span> <span class="n">CCoreFourShellModel</span> |
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79 | |
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80 | <div class="viewcode-block" id="create_CoreFourShellModel"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.CoreFourShellModel.create_CoreFourShellModel">[docs]</a><span class="k">def</span> <span class="nf">create_CoreFourShellModel</span><span class="p">():</span> |
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81 | <span class="sd">"""</span> |
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82 | <span class="sd"> Create a model instance</span> |
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83 | <span class="sd"> """</span> |
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84 | <span class="n">obj</span> <span class="o">=</span> <span class="n">CoreFourShellModel</span><span class="p">()</span> |
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85 | <span class="c"># CCoreFourShellModel.__init__(obj) is called by</span> |
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86 | <span class="c"># the CoreFourShellModel constructor</span> |
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87 | <span class="k">return</span> <span class="n">obj</span> |
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88 | </div> |
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89 | <div class="viewcode-block" id="CoreFourShellModel"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.CoreFourShellModel.CoreFourShellModel">[docs]</a><span class="k">class</span> <span class="nc">CoreFourShellModel</span><span class="p">(</span><span class="n">CCoreFourShellModel</span><span class="p">,</span> <span class="n">BaseComponent</span><span class="p">):</span> |
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90 | <span class="sd">""" </span> |
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91 | <span class="sd"> Class that evaluates a CoreFourShellModel model. </span> |
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92 | <span class="sd"> This file was auto-generated from src/sas/models/include/corefourshell.h.</span> |
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93 | <span class="sd"> Refer to that file and the structure it contains</span> |
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94 | <span class="sd"> for details of the model.</span> |
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95 | <span class="sd"> </span> |
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96 | <span class="sd"> List of default parameters:</span> |
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97 | |
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98 | <span class="sd"> * scale = 1.0 </span> |
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99 | <span class="sd"> * rad_core0 = 60.0 [A]</span> |
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100 | <span class="sd"> * sld_core0 = 6.4e-06 [1/A^(2)]</span> |
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101 | <span class="sd"> * thick_shell1 = 10.0 [A]</span> |
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102 | <span class="sd"> * sld_shell1 = 1e-06 [1/A^(2)]</span> |
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103 | <span class="sd"> * thick_shell2 = 10.0 [A]</span> |
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104 | <span class="sd"> * sld_shell2 = 2e-06 [1/A^(2)]</span> |
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105 | <span class="sd"> * thick_shell3 = 10.0 [A]</span> |
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106 | <span class="sd"> * sld_shell3 = 3e-06 [1/A^(2)]</span> |
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107 | <span class="sd"> * thick_shell4 = 10.0 [A]</span> |
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108 | <span class="sd"> * sld_shell4 = 4e-06 [1/A^(2)]</span> |
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109 | <span class="sd"> * sld_solv = 6.4e-06 [1/A^(2)]</span> |
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110 | <span class="sd"> * background = 0.001 [1/cm]</span> |
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111 | <span class="sd"> * M0_sld_shell1 = 0.0 [1/A^(2)]</span> |
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112 | <span class="sd"> * M_theta_shell1 = 0.0 [deg]</span> |
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113 | <span class="sd"> * M_phi_shell1 = 0.0 [deg]</span> |
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114 | <span class="sd"> * M0_sld_shell2 = 0.0 [1/A^(2)]</span> |
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115 | <span class="sd"> * M_theta_shell2 = 0.0 [deg]</span> |
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116 | <span class="sd"> * M_phi_shell2 = 0.0 [deg]</span> |
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117 | <span class="sd"> * M0_sld_shell3 = 0.0 [1/A^(2)]</span> |
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118 | <span class="sd"> * M_theta_shell3 = 0.0 [deg]</span> |
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119 | <span class="sd"> * M_phi_shell3 = 0.0 [deg]</span> |
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120 | <span class="sd"> * M0_sld_shell4 = 0.0 [1/A^(2)]</span> |
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121 | <span class="sd"> * M_theta_shell4 = 0.0 [deg]</span> |
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122 | <span class="sd"> * M_phi_shell4 = 0.0 [deg]</span> |
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123 | <span class="sd"> * M0_sld_core0 = 0.0 [1/A^(2)]</span> |
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124 | <span class="sd"> * M_theta_core0 = 0.0 [deg]</span> |
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125 | <span class="sd"> * M_phi_core0 = 0.0 [deg]</span> |
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126 | <span class="sd"> * M0_sld_solv = 0.0 [1/A^(2)]</span> |
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127 | <span class="sd"> * M_theta_solv = 0.0 [deg]</span> |
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128 | <span class="sd"> * M_phi_solv = 0.0 [deg]</span> |
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129 | <span class="sd"> * Up_frac_i = 0.5 [u/(u+d)]</span> |
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130 | <span class="sd"> * Up_frac_f = 0.5 [u/(u+d)]</span> |
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131 | <span class="sd"> * Up_theta = 0.0 [deg]</span> |
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132 | |
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133 | <span class="sd"> """</span> |
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134 | |
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135 | <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">multfactor</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span> |
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136 | <span class="sd">""" Initialization """</span> |
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137 | <span class="bp">self</span><span class="o">.</span><span class="n">__dict__</span> <span class="o">=</span> <span class="p">{}</span> |
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138 | |
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139 | <span class="c"># Initialize BaseComponent first, then sphere</span> |
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140 | <span class="n">BaseComponent</span><span class="o">.</span><span class="n">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> |
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141 | <span class="c">#apply(CCoreFourShellModel.__init__, (self,)) </span> |
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142 | |
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143 | <span class="n">CCoreFourShellModel</span><span class="o">.</span><span class="n">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> |
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144 | <span class="bp">self</span><span class="o">.</span><span class="n">is_multifunc</span> <span class="o">=</span> <span class="bp">False</span> |
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145 | |
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146 | <span class="c">## Name of the model</span> |
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147 | <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s">"CoreFourShellModel"</span> |
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148 | <span class="c">## Model description</span> |
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149 | <span class="bp">self</span><span class="o">.</span><span class="n">description</span> <span class="o">=</span> <span class="s">"""</span> |
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150 | <span class="s"> Calculates the scattering intensity from a core-4 shell structure.</span> |
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151 | <span class="s"> scale = scale factor * volume fraction</span> |
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152 | <span class="s"> rad_core0: the radius of the core</span> |
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153 | <span class="s"> sld_core0: the SLD of the core</span> |
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154 | <span class="s"> thick_shelli: the thickness of the i'th shell from the core</span> |
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155 | <span class="s"> sld_shelli: the SLD of the i'th shell from the core</span> |
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156 | <span class="s"> sld_solv: the SLD of the solvent</span> |
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157 | <span class="s"> background: incoherent background</span> |
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158 | <span class="s"> """</span> |
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159 | |
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160 | <span class="c">## Parameter details [units, min, max]</span> |
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161 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span> <span class="o">=</span> <span class="p">{}</span> |
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162 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'scale'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">''</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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163 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'rad_core0'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[A]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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164 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'sld_core0'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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165 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'thick_shell1'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[A]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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166 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'sld_shell1'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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167 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'thick_shell2'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[A]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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168 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'sld_shell2'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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169 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'thick_shell3'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[A]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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170 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'sld_shell3'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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171 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'thick_shell4'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[A]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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172 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'sld_shell4'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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173 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'sld_solv'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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174 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'background'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/cm]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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175 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M0_sld_shell1'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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176 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_theta_shell1'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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177 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_phi_shell1'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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178 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M0_sld_shell2'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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179 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_theta_shell2'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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180 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_phi_shell2'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
---|
181 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M0_sld_shell3'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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182 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_theta_shell3'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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183 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_phi_shell3'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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184 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M0_sld_shell4'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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185 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_theta_shell4'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
---|
186 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_phi_shell4'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
---|
187 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M0_sld_core0'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
---|
188 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_theta_core0'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
---|
189 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_phi_core0'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
---|
190 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M0_sld_solv'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
---|
191 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_theta_solv'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
---|
192 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_phi_solv'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
---|
193 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'Up_frac_i'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[u/(u+d)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
---|
194 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'Up_frac_f'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[u/(u+d)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
---|
195 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'Up_theta'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
---|
196 | |
---|
197 | <span class="c">## fittable parameters</span> |
---|
198 | <span class="bp">self</span><span class="o">.</span><span class="n">fixed</span> <span class="o">=</span> <span class="p">[</span><span class="s">'thick_shell4.width'</span><span class="p">,</span> |
---|
199 | <span class="s">'thick_shell1.width'</span><span class="p">,</span> |
---|
200 | <span class="s">'thick_shell2.width'</span><span class="p">,</span> |
---|
201 | <span class="s">'thick_shell3.width'</span><span class="p">,</span> |
---|
202 | <span class="s">'rad_core0.width'</span><span class="p">]</span> |
---|
203 | |
---|
204 | <span class="c">## non-fittable parameters</span> |
---|
205 | <span class="bp">self</span><span class="o">.</span><span class="n">non_fittable</span> <span class="o">=</span> <span class="p">[]</span> |
---|
206 | |
---|
207 | <span class="c">## parameters with orientation</span> |
---|
208 | <span class="bp">self</span><span class="o">.</span><span class="n">orientation_params</span> <span class="o">=</span> <span class="p">[</span><span class="s">'M0_sld_shell4'</span><span class="p">,</span> |
---|
209 | <span class="s">'M_theta_shell4'</span><span class="p">,</span> |
---|
210 | <span class="s">'M_phi_shell4'</span><span class="p">,</span> |
---|
211 | <span class="s">'M0_sld_shell3'</span><span class="p">,</span> |
---|
212 | <span class="s">'M_theta_shell3'</span><span class="p">,</span> |
---|
213 | <span class="s">'M_phi_shell3'</span><span class="p">,</span> |
---|
214 | <span class="s">'M0_sld_shell2'</span><span class="p">,</span> |
---|
215 | <span class="s">'M_theta_shell2'</span><span class="p">,</span> |
---|
216 | <span class="s">'M_phi_shell2'</span><span class="p">,</span> |
---|
217 | <span class="s">'M0_sld_shell1'</span><span class="p">,</span> |
---|
218 | <span class="s">'M_theta_shell1'</span><span class="p">,</span> |
---|
219 | <span class="s">'M_phi_shell1'</span><span class="p">,</span> |
---|
220 | <span class="s">'M0_sld_core0'</span><span class="p">,</span> |
---|
221 | <span class="s">'M_theta_core0'</span><span class="p">,</span> |
---|
222 | <span class="s">'M_phi_core0'</span><span class="p">,</span> |
---|
223 | <span class="s">'M0_sld_solv'</span><span class="p">,</span> |
---|
224 | <span class="s">'M_theta_solv'</span><span class="p">,</span> |
---|
225 | <span class="s">'M_phi_solv'</span><span class="p">,</span> |
---|
226 | <span class="s">'Up_frac_i'</span><span class="p">,</span> |
---|
227 | <span class="s">'Up_frac_f'</span><span class="p">,</span> |
---|
228 | <span class="s">'Up_theta'</span><span class="p">]</span> |
---|
229 | |
---|
230 | <span class="c">## parameters with magnetism</span> |
---|
231 | <span class="bp">self</span><span class="o">.</span><span class="n">magnetic_params</span> <span class="o">=</span> <span class="p">[</span><span class="s">'M0_sld_shell4'</span><span class="p">,</span> <span class="s">'M_theta_shell4'</span><span class="p">,</span> <span class="s">'M_phi_shell4'</span><span class="p">,</span> <span class="s">'M0_sld_shell3'</span><span class="p">,</span> <span class="s">'M_theta_shell3'</span><span class="p">,</span> <span class="s">'M_phi_shell3'</span><span class="p">,</span> <span class="s">'M0_sld_shell2'</span><span class="p">,</span> <span class="s">'M_theta_shell2'</span><span class="p">,</span> <span class="s">'M_phi_shell2'</span><span class="p">,</span> <span class="s">'M0_sld_shell1'</span><span class="p">,</span> <span class="s">'M_theta_shell1'</span><span class="p">,</span> <span class="s">'M_phi_shell1'</span><span class="p">,</span> <span class="s">'M0_sld_core0'</span><span class="p">,</span> <span class="s">'M_theta_core0'</span><span class="p">,</span> <span class="s">'M_phi_core0'</span><span class="p">,</span> <span class="s">'M0_sld_solv'</span><span class="p">,</span> <span class="s">'M_theta_solv'</span><span class="p">,</span> <span class="s">'M_phi_solv'</span><span class="p">,</span> <span class="s">'Up_frac_i'</span><span class="p">,</span> <span class="s">'Up_frac_f'</span><span class="p">,</span> <span class="s">'Up_theta'</span><span class="p">]</span> |
---|
232 | |
---|
233 | <span class="bp">self</span><span class="o">.</span><span class="n">category</span> <span class="o">=</span> <span class="bp">None</span> |
---|
234 | <span class="bp">self</span><span class="o">.</span><span class="n">multiplicity_info</span> <span class="o">=</span> <span class="bp">None</span> |
---|
235 | |
---|
236 | <span class="k">def</span> <span class="nf">__setstate__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">state</span><span class="p">):</span> |
---|
237 | <span class="sd">"""</span> |
---|
238 | <span class="sd"> restore the state of a model from pickle</span> |
---|
239 | <span class="sd"> """</span> |
---|
240 | <span class="bp">self</span><span class="o">.</span><span class="n">__dict__</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">params</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">dispersion</span> <span class="o">=</span> <span class="n">state</span> |
---|
241 | |
---|
242 | <span class="k">def</span> <span class="nf">__reduce_ex__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">proto</span><span class="p">):</span> |
---|
243 | <span class="sd">"""</span> |
---|
244 | <span class="sd"> Overwrite the __reduce_ex__ of PyTypeObject *type call in the init of </span> |
---|
245 | <span class="sd"> c model.</span> |
---|
246 | <span class="sd"> """</span> |
---|
247 | <span class="n">state</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">__dict__</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">params</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">dispersion</span><span class="p">)</span> |
---|
248 | <span class="k">return</span> <span class="p">(</span><span class="n">create_CoreFourShellModel</span><span class="p">,</span> <span class="nb">tuple</span><span class="p">(),</span> <span class="n">state</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">)</span> |
---|
249 | |
---|
250 | <div class="viewcode-block" id="CoreFourShellModel.clone"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.CoreFourShellModel.CoreFourShellModel.clone">[docs]</a> <span class="k">def</span> <span class="nf">clone</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span> |
---|
251 | <span class="sd">""" Return a identical copy of self """</span> |
---|
252 | <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_clone</span><span class="p">(</span><span class="n">CoreFourShellModel</span><span class="p">())</span> |
---|
253 | </div> |
---|
254 | <div class="viewcode-block" id="CoreFourShellModel.run"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.CoreFourShellModel.CoreFourShellModel.run">[docs]</a> <span class="k">def</span> <span class="nf">run</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x</span><span class="o">=</span><span class="mf">0.0</span><span class="p">):</span> |
---|
255 | <span class="sd">""" </span> |
---|
256 | <span class="sd"> Evaluate the model</span> |
---|
257 | <span class="sd"> </span> |
---|
258 | <span class="sd"> :param x: input q, or [q,phi]</span> |
---|
259 | <span class="sd"> </span> |
---|
260 | <span class="sd"> :return: scattering function P(q)</span> |
---|
261 | <span class="sd"> </span> |
---|
262 | <span class="sd"> """</span> |
---|
263 | <span class="k">return</span> <span class="n">CCoreFourShellModel</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span> |
---|
264 | </div> |
---|
265 | <div class="viewcode-block" id="CoreFourShellModel.runXY"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.CoreFourShellModel.CoreFourShellModel.runXY">[docs]</a> <span class="k">def</span> <span class="nf">runXY</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x</span><span class="o">=</span><span class="mf">0.0</span><span class="p">):</span> |
---|
266 | <span class="sd">""" </span> |
---|
267 | <span class="sd"> Evaluate the model in cartesian coordinates</span> |
---|
268 | <span class="sd"> </span> |
---|
269 | <span class="sd"> :param x: input q, or [qx, qy]</span> |
---|
270 | <span class="sd"> </span> |
---|
271 | <span class="sd"> :return: scattering function P(q)</span> |
---|
272 | <span class="sd"> </span> |
---|
273 | <span class="sd"> """</span> |
---|
274 | <span class="k">return</span> <span class="n">CCoreFourShellModel</span><span class="o">.</span><span class="n">runXY</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span> |
---|
275 | </div> |
---|
276 | <div class="viewcode-block" id="CoreFourShellModel.evalDistribution"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.CoreFourShellModel.CoreFourShellModel.evalDistribution">[docs]</a> <span class="k">def</span> <span class="nf">evalDistribution</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x</span><span class="p">):</span> |
---|
277 | <span class="sd">""" </span> |
---|
278 | <span class="sd"> Evaluate the model in cartesian coordinates</span> |
---|
279 | <span class="sd"> </span> |
---|
280 | <span class="sd"> :param x: input q[], or [qx[], qy[]]</span> |
---|
281 | <span class="sd"> </span> |
---|
282 | <span class="sd"> :return: scattering function P(q[])</span> |
---|
283 | <span class="sd"> </span> |
---|
284 | <span class="sd"> """</span> |
---|
285 | <span class="k">return</span> <span class="n">CCoreFourShellModel</span><span class="o">.</span><span class="n">evalDistribution</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span> |
---|
286 | </div> |
---|
287 | <div class="viewcode-block" id="CoreFourShellModel.calculate_ER"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.CoreFourShellModel.CoreFourShellModel.calculate_ER">[docs]</a> <span class="k">def</span> <span class="nf">calculate_ER</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span> |
---|
288 | <span class="sd">""" </span> |
---|
289 | <span class="sd"> Calculate the effective radius for P(q)*S(q)</span> |
---|
290 | <span class="sd"> </span> |
---|
291 | <span class="sd"> :return: the value of the effective radius</span> |
---|
292 | <span class="sd"> </span> |
---|
293 | <span class="sd"> """</span> |
---|
294 | <span class="k">return</span> <span class="n">CCoreFourShellModel</span><span class="o">.</span><span class="n">calculate_ER</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> |
---|
295 | </div> |
---|
296 | <div class="viewcode-block" id="CoreFourShellModel.calculate_VR"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.CoreFourShellModel.CoreFourShellModel.calculate_VR">[docs]</a> <span class="k">def</span> <span class="nf">calculate_VR</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span> |
---|
297 | <span class="sd">""" </span> |
---|
298 | <span class="sd"> Calculate the volf ratio for P(q)*S(q)</span> |
---|
299 | <span class="sd"> </span> |
---|
300 | <span class="sd"> :return: the value of the volf ratio</span> |
---|
301 | <span class="sd"> </span> |
---|
302 | <span class="sd"> """</span> |
---|
303 | <span class="k">return</span> <span class="n">CCoreFourShellModel</span><span class="o">.</span><span class="n">calculate_VR</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> |
---|
304 | </div> |
---|
305 | <div class="viewcode-block" id="CoreFourShellModel.set_dispersion"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.CoreFourShellModel.CoreFourShellModel.set_dispersion">[docs]</a> <span class="k">def</span> <span class="nf">set_dispersion</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">parameter</span><span class="p">,</span> <span class="n">dispersion</span><span class="p">):</span> |
---|
306 | <span class="sd">"""</span> |
---|
307 | <span class="sd"> Set the dispersion object for a model parameter</span> |
---|
308 | <span class="sd"> </span> |
---|
309 | <span class="sd"> :param parameter: name of the parameter [string]</span> |
---|
310 | <span class="sd"> :param dispersion: dispersion object of type DispersionModel</span> |
---|
311 | <span class="sd"> </span> |
---|
312 | <span class="sd"> """</span> |
---|
313 | <span class="k">return</span> <span class="n">CCoreFourShellModel</span><span class="o">.</span><span class="n">set_dispersion</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> |
---|
314 | <span class="n">parameter</span><span class="p">,</span> <span class="n">dispersion</span><span class="o">.</span><span class="n">cdisp</span><span class="p">)</span> |
---|
315 | |
---|
316 | |
---|
317 | <span class="c"># End of file</span> |
---|
318 | </pre></div></div></div> |
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319 | |
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